Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Fusarium_20tucumaniae_20[genbank_20GCA_5F001680535.1_202016-07-06] 15,093 sequences; 48,383,620 total letters Query= NC_017940.1 Length=127732 Score E Sequences producing significant alignments: (Bits) Value seq394 113 4e-20 seq889 82.4 6e-11 >seq394 Length=19953 Score = 113 bits (124), Expect = 4e-20 Identities = 201/289 (70%), Gaps = 7/289 (2%) Strand=Plus/Minus Query 29686 TGAGGGTCGTAACCCTCCAGGGAGAAATCCTCTGCCTTAAAGTCGTCCAGGTTCTCCACC 29745 |||||||| || |||| | |||||||| ||||| | |||| | | | ||| || Sbjct 8743 TGAGGGTCATAGCCCTTGATAACAAAATCCTCCGCCTTCCACCCGTCGATGCT-TCCGCC 8685 Query 29746 CTCCTGT----TTATCCTCAGTGTGGGAAAGGGTCTGGGCTCCCTCTCGAGCTGAGTCTT 29801 || || | | ||| ||| |||||| | |||||| | ||| ||||| || || Sbjct 8684 CTTCTCTCGAGTAATCTCCAGCTCTGGAAAGTCACGGGGCTCGCGCTCAAGCTGCGTGTT 8625 Query 29802 CAGCGGTTCCACGTGATCCAGGTAGACGTGAGCGTCTCCCAGGGTGTGGACAAACTCTCC 29861 || | |||||||| || ||||||||||| || || |||| | ||| | | || | Sbjct 8624 GAGAGCATCCACGTGGTCGAGGTAGACGTGCGCATCGCCCATGACGTG-AGTGAGGCTGC 8566 Query 29862 C-GGTTCTAGCCCGGTGACGTGAGCCATCATGTACGTGAGGAGAGAGTAGCTGGCGATGT 29920 | || | | || |||||| |||||||||| || || || | ||||||||| |||| Sbjct 8565 CAGGCACCAATTCGCAGACGTGCGCCATCATGTGTGTCAGCAGTGCGTAGCTGGCAATGT 8506 Query 29921 TAAAGGGTACCCCGAGCCCCATGTCCCCCGACCTCTGGTAGAGCTGACA 29969 | || || || ||||| |||||||| | || | |||||||||||| || Sbjct 8505 TGAACGGGACGCCGAGACCCATGTCGCAGGATCGCTGGTAGAGCTGGCA 8457 Score = 93.3 bits (102), Expect = 3e-14 Identities = 184/270 (68%), Gaps = 2/270 (1%) Strand=Plus/Minus Query 30115 AGCTGATCCACCCCCATCCCCGAGTAGTCTGCCCTCATGTCCGTGTACTCTGCTCCGAAA 30174 ||||| || || ||| | |||| |||||| | | | || |||||| || || || Sbjct 8272 AGCTGGTCGACGCCCTTGCCCGTGTAGTCCGTCTTGGCATCAACGTACTCGGCGCCAAAG 8213 Query 30175 TGCCTCCACTGGAACCCGTACACCGGTCCCAGGTCTCCCTCTTCCCTGTGCTCGAAGCCC 30234 || | ||| ||||| |||||||| || || || || || | || | ||| | || ||| Sbjct 8212 TGTCGCCATTGGAAGCCGTACACGGGGCCGAGATCGCCGACCTCGCGGTGGTTGAGGCCG 8153 Query 30235 CTCTTGTCCAAAAAGTCTCTGGAACCGTTGGCGTCCCAGATCTTTACCCCCTTCTCGGAG 30294 ||||| | || || | ||| || ||| ||||||||||||| | || |||| | Sbjct 8152 AGGTTGTCGAGGAACTCGCGGGAGCCATTGCCGTCCCAGATCTTGATGCCGGCCTCGCTG 8093 Query 30295 AGCTCTTTGGAGTTTGTGGA-CCCTCTGACGAACCACAGCAGCTCCTCCACGACGGCCTT 30353 || ||||| |||| ||||| || |||||| || ||||| | | |||||| Sbjct 8092 AGGCTGGTGGAGGATGTGTTGCCCTC-GATGAACCAGAGGAGCTCGGCGATGACGGCGCG 8034 Query 30354 CCAAAAGACCCTCTTGGTCGTGAGGAGGGG 30383 ||||| | |||||| ||||||||||| Sbjct 8033 GGTGAAGACGCGCTTGGTGGTGAGGAGGGG 8004 >seq889 Length=13703 Score = 82.4 bits (90), Expect = 6e-11 Identities = 129/180 (72%), Gaps = 6/180 (3%) Strand=Plus/Plus Query 52016 CGTCAAGGTGAGGCTGAGGACCCCCAGGCACCCAGAGATGGGCGACAAGTTTGCGTCGT- 52074 ||||||||| | ||||||| ||| | || |||| |||||||||||||| || Sbjct 5548 CGTCAAGGTCCGTGTGAGGACGACCAAGATTCCCCAGATTGGCGACAAGTTTGCCTCTCG 5607 Query 52075 TCACGGCGCAAAAGGGGACG--TGCGGAGCCGTCCTGACCCAGGAGGACATGCCCTTCGA 52132 |||||| || ||||| || || | | ||| | | | ||||||| ||||||||| Sbjct 5608 TCACGGA-CAGAAGGGTACCATTGGTGTGACGTACCGTC--AGGAGGATATGCCCTTCAG 5664 Query 52133 CAAGGACGGGGTGGTGCCCGACCTCATCATCAACCCCCACGCCTTTCCATCCAGGATGAC 52192 || ||| || ||| || ||| | ||||| |||||||||||| |||| || | ||||| Sbjct 5665 CAGGGAGGGTGTGACACCGGACATTATCATTAACCCCCACGCCATTCCGTCGCGAATGAC 5724 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 408542436452489