Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Fusarium_20tucumaniae_20[genbank_20GCA_5F001680535.1_202016-07-06] 15,093 sequences; 48,383,620 total letters Query= NC_026440.1 Length=2243109 Score E Sequences producing significant alignments: (Bits) Value seq951 212 9e-49 seq531 114 2e-19 seq681 89.7 7e-12 >seq951 Length=13420 Score = 212 bits (234), Expect = 9e-49 Identities = 402/572 (70%), Gaps = 31/572 (5%) Strand=Plus/Plus Query 1455765 GCTACCAGCGGATATGGGAAATGTACCAAAAAGGCCGAGGCCTCCTTTTGGACCGCCGAG 1455824 || |||| | ||| ||| | |||||| || |||||||||||||| || ||||| |||||| Sbjct 5801 GCAACCA-CAGATCTGGCAGATGTAC-AAGAAGGCCGAGGCCTCTTTCTGGACTGCCGAG 5858 Query 1455825 GAGGTCGACCTCGGCGCCGA----CACGGTCCACTGGGTGT--CGC-TGAGCGACGACGA 1455877 ||| | || | | || |||| ||||| ||| ||| | |||||| Sbjct 5859 GAGATTGATTTATCCAAGGATCTCCACG----ACTGGAACAACCGCCTGACTGCCGACGA 5914 Query 1455878 GCGCCATTTCATCAAGCACGTCCTCGCCTTTTTTCGCCGCCAGCGATGGCATCGTGGCCG 1455937 || ||| || ||| |||||||||| || ||| || || |||||||| || Sbjct 5915 GCAGTTCTTCGTCTCCCACATCCTCGCCTTCTT-CGCTGCATCTGACGGCATCGTCAACG 5973 Query 1455938 AGAACCTGGCCGGCCGCTTTATGAAAGAGGTCCAATTGCCAGAGGCACGTTTGTTTTACG 1455997 ||||||| | || || || | |||||||| | || ||||| || | || |||| Sbjct 5974 AGAACCTTGTCGAGCGATTCAGCGGCGAGGTCCAGATCCCCGAGGCCCGATGCTTCTACG 6033 Query 1455998 GGTTCCAGATCGCCATCGAAAACATCCACTCTGAAACCTACTCGCTCCTGATCGACACCT 1456057 | ||||||||| || || ||||||||||| || |||||||||||||| || ||||||| Sbjct 6034 GCTTCCAGATCATGATGGAGAACATCCACTCCGAGACCTACTCGCTCCTCATTGACACCT 6093 Query 1456058 ACGTCAAGGACCCGGTCGAGAAGGACC-ACCTCTTTCGCGCCATCGACACGGTGCCGTCG 1456116 || ||||||| || | | | | ||| ||||||| |||||| || || | || | Sbjct 6094 ACATCAAGGAGCCTG-CTCAACGAACCTACCTCTTCAACGCCATTGAGACCATCCCCTGC 6152 Query 1456117 GTGAGGAAAAAGGCCGACTGGGCGATGAAGTGGATC---AACAAGGAGGGCCTCGACACT 1456173 | | || |||||||||||||| || |||||| ||||| | |||| | || Sbjct 6153 ATCCGCAAGAAGGCCGACTGGGCCATCCGATGGATCCAGGACAAGAA----CTCGTC-CT 6207 Query 1456174 TTGCCGAGCGGCTCGTCGGCTTTGCCG-CGTCGAGGGCATCTTTTTC-TCGG-GCAGTTT 1456230 |||| |||| ||||||| ||||| | ||||||||| ||||| ||| ||| || || Sbjct 6208 TTGCTCAGCGTCTCGTCGCTTTTGCTGCCGTCGAGGGTATCTTCTTCAGCGGTGCCTTTG 6267 Query 1456231 CTGCGCCATCTTTTGGCTCAAGAAGCGCGGCCTCATGCCCGGTCTTCTGCTTTAGCAACG 1456290 | | ||||||| |||||||||||||| ||||||||||| || | | |||| ||||| Sbjct 6268 C--CTCCATCTTCTGGCTCAAGAAGCGTGGCCTCATGCCTGG-CCTGACCTTTTCCAACG 6324 Query 1456291 AATTTATCAGTCGCGACGA-AGTTTTCACCCC 1456321 | | ||| ||| ||||| || ||||| || Sbjct 6325 AGCTCATCTCTCGTGACGAGGGTCTTCACACC 6356 Score = 116 bits (128), Expect = 5e-20 Identities = 180/252 (71%), Gaps = 4/252 (2%) Strand=Plus/Plus Query 1456523 ATCATCGTCGAGGCCGTCGAGATCGAGAAAGAGTTTGTCAGCGAGTCGCTGCCGGTGGCG 1456582 |||||| ||| |||||| || ||| | ||||| | | |||| | || || || Sbjct 6420 ATCATCACCGATGCCGTCACCATTGAGCAGGAGTTCCTGACCGAGGCCCTCCCCTGCGCC 6479 Query 1456583 CTCATCGGCATGAACGCCACCGCTCATGTGCCAGTACATTGAATTTTGTCGCCGACCGCC 1456642 || |||||||||||||| | |||||| |||||||| || || ||||||||||||| Sbjct 6480 CTGCTCGGCATGAACGCCGAC-CTCATGAAGCAGTACATCGAGTTC-GTCGCCGACCGCC 6537 Query 1456643 TGCTCGCGGCGCTCGGCTGCGGAGAAGCACTACCGGACGGCCAACCCGTTCCCATGGATG 1456702 | |||| || |||||| || ||||| |||| | | ||||||| ||| | ||| Sbjct 6538 TCCTCGTCGCCCTCGGCAACG-AGAAGGTCTACAAGGCCACCAACCCCTTCGACTTCATG 6596 Query 1456703 GAGTTGATCTCGCTCGAGGGCAAGACCAACTTTTTCGAGCGCCGCGT-GGCGAGTACGCC 1456761 ||| ||||| |||| |||||||||||||| |||||| || || || || ||| Sbjct 6597 GAGAACATCTCCCTCGGTGGCAAGACCAACTTCTTCGAGAAGCGTGTCGGTGACTACCAG 6656 Query 1456762 AAGGCCGGCGTC 1456773 ||||| || ||| Sbjct 6657 AAGGCTGGTGTC 6668 >seq531 Length=18082 Score = 114 bits (126), Expect = 2e-19 Identities = 334/506 (66%), Gaps = 25/506 (5%) Strand=Plus/Minus Query 259682 CACAAGGAGGTCCTCGACGCTGCCATCTGCCACGGCCGAGACTTTGGCTACTCGTACTTT 259741 |||||||||| || ||| | ||||| | | | ||| ||||| ||| |||||| Sbjct 10099 CACAAGGAGGAGCTAGACTCGGCCATTGTCTATGACCGTGACTTCCAATACCAGTACTTC 10040 Query 259742 GGTCTGGCGAC-CTTGCGCCGGTCCTACCTGACCAA-AGTGC--GCGATATTGTCGTCGA 259797 || | ||| |||| || | |||||||| ||| | || || | ||||| | | Sbjct 10039 GGCTTCAAGACTCTTGAGC-GATCCTACCTCCTCAAGATTGATGGCAAGATTGTTG---A 9984 Query 259798 GCGGCCCCAGTATATGCTCATGCGTGTCGCCCTTGGCCATTATGGGTTTGCCGACGTCGA 259857 ||| |||||| | ||| |||||||||| | | ||| | |||| | || Sbjct 9983 GCGTCCCCAGCACATGATCATGCGTGTGTCTGTCGGCA--TCTGGGGT----------GA 9936 Query 259858 CAATGCGCTGGAGCACGTGCTCGCCACCTACGAGGCCATGTCGCAGCAG-TTGTTCACCT 259916 | || | |||| || || | |||||| | |||||| |||| || |||||| Sbjct 9935 CGATA---TTGAGCGTGTCCTGGAGACCTACAACCTGATGTCG-AGCAAATTCTTCACCC 9880 Query 259917 CAGCGACGCCCACGCTCTTTAATGCCGGCACGCCGCGCCCGCAGAATTCGTCGTGCTTTC 259976 || | ||||| ||||| ||||| || || || | || ||| || || ||||| | Sbjct 9879 ATGCCTCCCCCACCCTCTTCAATGCTGGTACTCCCCAGCCTCAGCTGTCCTCATGCTTCC 9820 Query 259977 TGTTGGACATGAAGGCCGATTCGATCGAGGGCATCTATGACACGCTCAAGCAGTGCGCGC 260036 || | |||||||| | || || ||||| || ||||| || |||||| || || Sbjct 9819 TGGTCGACATGAAAGAGGACAGCATTGAGGGTATTTATGATACTCTCAAGACCTGTGCCA 9760 Query 260037 TCATCTCCAAGGCGGCCGGCGGCATCGGTTTTGCCGCACACAAGGTGCGCGCCGCGGGCG 260096 | ||||||||| ||| || || ||||| | || ||| | || ||| | ||| Sbjct 9759 TGATCTCCAAGATGGCGGGTGGTATCGGCCTGAACGTCCACCGAATCCGTGCCACTGGCT 9700 Query 260097 CCTACGTGGCGGGCACCAACGGCCAGTCCAACGGCCTTGTGCCCATGCTTCGCGTTTTTA 260156 | ||| | || || |||||||| |||||||| | ||||||||||| || || | Sbjct 9699 CTTACATCGCTGGTACCAACGGTACCTCCAACGGTGTCACCCCCATGCTTCGTGTCTTCA 9640 Query 260157 ACGACACGGCGCGCTACGTCGACCAG 260182 || |||| || || |||||||||||| Sbjct 9639 ACAACACTGCCCGGTACGTCGACCAG 9614 Score = 96.9 bits (106), Expect = 5e-14 Identities = 108/142 (76%), Gaps = 2/142 (1%) Strand=Plus/Minus Query 262092 AGATCTGGTCGGCCATTGTCGCGGCCCATATCGAGACCGGCACGCCCTACATGGTCTACA 262151 || |||||| ||||| ||| ||| || | ||||||||||| |||| |||| |||||| Sbjct 9315 AGCTCTGGTATGCCATCCTCGAGGCGCAGACCGAGACCGGCAACCCCTTCATGCTCTACA 9256 Query 262152 AGGACGCCGTCAACCTGACCAGCAACCAGCAGAACCTGGGCACCA-CGACAGAGGCCAAC 262210 ||||| | ||||| | ||||||||| ||||||||||||||| | || |||| Sbjct 9255 AGGACCACTGCAACCGCAAGAGCAACCAGAAGAACCTGGGCACCATCCGTAG-CTCCAAT 9197 Query 262211 CTGTGCACCGAGATCGTCCAGT 262232 || ||||||||||| || ||| Sbjct 9196 CTCTGCACCGAGATTATCGAGT 9175 >seq681 Length=15397 Score = 89.7 bits (98), Expect = 7e-12 Identities = 126/177 (71%), Gaps = 0/177 (0%) Strand=Plus/Minus Query 332878 CAGGATGGCACAACGGCTCTGCAGGGCCTCGATGACCATTGACGACGTGTTGCAGGCCAG 332937 ||||||||| || || || |||| ||| |||| | | ||| ||||||||| | Sbjct 8103 CAGGATGGCGCATCGCGATTGTAGGGGCTCAATGATCTTGTTGGACTGGTTGCAGGCAAA 8044 Query 332938 GGCAAACCGCGTCGTATTGGTATGCTTTTCCATGGTCGACCGGAGGGCCTGTTGGGCCGC 332997 ||| || | ||||| |||| | |||||||||| ||||| || || ||||| | Sbjct 8043 GGCGAATCTGGTCGTGTTGGAGTAGATTTCCATGGTTCGTCGGAGTGCTTGCTGGGCGCC 7984 Query 332998 CGGCGTGAGGCAGTCGGCCTCGTCGAGGATGATGATCTTGTGGCGCCCGTGCGGCAG 333054 || || | || ||| || ||||||||||||| | ||||||||| ||| |||||| Sbjct 7983 CGAGGTCATGCTGTCAGCTTCGTCGAGGATGACCAGCTTGTGGCGGCCGGCCGGCAG 7927 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 7176355452409066