Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Fusarium_20tucumaniae_20[genbank_20GCA_5F001680535.1_202016-07-06] 15,093 sequences; 48,383,620 total letters Query= NC_028110.1 Length=171045 Score E Sequences producing significant alignments: (Bits) Value seq531 259 5e-64 seq267 152 6e-32 seq951 100 3e-16 >seq531 Length=18082 Score = 259 bits (286), Expect = 5e-64 Identities = 501/733 (68%), Gaps = 30/733 (4%) Strand=Plus/Minus Query 53233 GCGTGTCCGTGAGACGTACGACTTAATG---AGCCAAAAGTACTTTACGCACGCCACGCC 53289 |||||||| ||||| ||| || | ||| ||| || | ||| || || ||| | || Sbjct 9926 GCGTGTCCTGGAGACCTACAACCTGATGTCGAGCAAA---TTCTTCACCCATGCCTCCCC 9870 Query 53290 AACCCTGTTCAACGCTGGTACGAATCACCCTCAGATGTCGAGCTGCTTCCTGGTGGCGAT 53349 ||||| ||||| |||||||| || |||||| |||| ||||||||||| | || Sbjct 9869 CACCCTCTTCAATGCTGGTACTCCCCAGCCTCAGCTGTCCTCATGCTTCCTGGTCGACAT 9810 Query 53350 GAAGGATGACTCGATCGACGGCATCTACGAGACGCTCAAGGAGTGTGCCCACATCTCCAA 53409 ||| || ||| || || || || || || || |||||| |||||| |||||||| Sbjct 9809 GAAAGAGGACAGCATTGAGGGTATTTATGATACTCTCAAGACCTGTGCCATGATCTCCAA 9750 Query 53410 GTGGTCGGGTGGTATCGGTATCCACTGCT--CGAACGTCCGTGCGAACGGCACACCAATC 53467 | | ||||||||||||| | || | |||| ||||||| | ||| | ||| Sbjct 9749 GATGGCGGGTGGTATCGGCCTGAACGTCCACCGAA--TCCGTGCCACTGGCTCTTACATC 9692 Query 53468 AAGGGGACGAACGGCGTCGCCGATGGAATCGTGCCTATGCTCCGCGTCTTCAACAACACG 53527 || || ||||| | || | || || || ||||| || |||||||||||||| Sbjct 9691 GCTGGTACCAACGGTACCTCCAACGGTGTCACCCCCATGCTTCGTGTCTTCAACAACACT 9632 Query 53528 GCCCGGTACGTCAACCAGGGTGGTGGGAAGCGCAAGGGGTCGTTCGCCATCTACCTCGAG 53587 |||||||||||| |||||||||| ||||| || | || ||||||||||| ||| Sbjct 9631 GCCCGGTACGTCGACCAGGGTGGCAACAAGCGACCTGGTGCCTTTGCCATCTACCTTGAG 9572 Query 53588 CCGTGGCACGCCGACATTATGGAGTTTCTCGAGCTGCGTCTGAATCAGGGTGACGAAGAG 53647 || |||||||| || | | ||||| || || ||||| ||| || || | || ||| Sbjct 9571 CCCTGGCACGCAGATGTCTTTGAGTTCCTTGACCTGCGCAAGAACCACGGCAAGGAGGAG 9512 Query 53648 ATGCGCTGCCGTGACCTGTTTACAGCTCTGTGGATTCCGGACCTCTTCATGCAAAAGGTG 53707 | ||| ||| |||||||| ||||| |||||||| || ||||||||| | || Sbjct 9511 GTCCGCGCCCGCGACCTGTTCCTGGCTCTCTGGATTCCCGATCTCTTCATGAAGCGTGTC 9452 Query 53708 GAGAAGGACGAGGAGTGGTACCTGATGTGCCCGAACGAGTGCCCCGGCCT-CCAGGGTGT 53766 |||||| ||| || ||| ||| ||||| || |||||||||||||| || | | || Sbjct 9451 GAGAAGAACGGTGACTGGACCCTCATGTGTCCCAACGAGTGCCCCGGTCTGGCCGACTG- 9393 Query 53767 CTACGGTGAGGAGT---------TTAACGAGATGTATCGGACGTACGCAGTTCAGGGCCG 53817 ||| || ||||||| || |||| | |||| || | | || | |||| || Sbjct 9392 CTATGGCGAGGAGTTCGAGGCTCTTTACGAAAAGTAT--GA-GAAGGCGGGCAAGGGTCG 9336 Query 53818 CTACAAGAAGAAGGTCAAGGCGCGTGAGGTATGGGATGCAATCCTCAAGAGCCAGGTGGA 53877 | |||| | ||||| | || | ||| |||| |||||| || ||| || Sbjct 9335 C------AAGACCATGAAGGCCCAGAAGCTCTGGTATGCCATCCTCGAGGCGCAGACCGA 9282 Query 53878 GACGGGAACGCCGTACATGTGCTACAAGGATTCGGTCAACGAGAAGAGCAACCAGAAGAA 53937 ||| || | || | |||| ||||||||| |||| ||||||||||||||||| Sbjct 9281 GACCGGCAACCCCTTCATGCTCTACAAGGACCACTGCAACCGCAAGAGCAACCAGAAGAA 9222 Query 53938 CATCGGCGTCATC 53950 | | ||| |||| Sbjct 9221 CCTGGGCACCATC 9209 Score = 111 bits (122), Expect = 2e-19 Identities = 554/860 (64%), Gaps = 52/860 (6%) Strand=Plus/Minus Query 55096 TGACTTTGACAAGCTTCACGAAGTGACGCGTGTTGTGACTCGGAACCTGAACCGGGTCAT 55155 |||||| | ||| | ||||| || || | ||||| ||| ||||||||| || | || Sbjct 9092 TGACTTCCAGAAGTTGCACGACGTCACACAGGTTGTCGTTCGCAACCTGAACAGGATTAT 9033 Query 55156 CGACAAGAATTACTACCCG---ACTGAAGCGGCGCGCAAGTCCAACCTCCGGCACCGGCC 55212 |||| ||| ||||||| || ||||| ||||| |||| | || ||||| || Sbjct 9032 CGACGTGAACCACTACCCTGTTACGGAAGCT---CGCAACAGCAACATGCGACACCGACC 8976 Query 55213 CATCGCCATCGGTGTACAGGGCTTGGCCGACATCTTCATGATGCTCGGAT--TGCCCTTC 55270 ||| | | ||||| ||||| | || || ||| | ||||| | |||| ||| Sbjct 8975 CATTGGTGTTGGTGTCCAGGGTCTTGCTGATGCTTTCCT--TGCTCTGCGCATGCCTTTC 8918 Query 55271 GACTCGGAACCTGCTCGAGAAATTAACCAGGACATCTTC-AGTCGCATCTACTTTGCAGC 55329 || || ||||| || | ||| || | |||||| || | ||||||| ||| || Sbjct 8917 GAGTCTCCCGAGGCTCGTGAGCTCAACAAGCAGATCTTCGAGAC-CATCTACCATGCTGC 8859 Query 55330 GCTCGAGGAGTCGTGTCATCTGGCTATGAGCGAGGGGACCTACGAGACGTTCCGTGATTC 55389 ||| | ||| || ||||| | | ||||| ||||| || ||| | || Sbjct 8858 CCTCACTGCTTCGGTGCAGCTGGCCAAGGAGGAGGGTCCCTACTCCACCTTCAAGGGCTC 8799 Query 55390 GCCAGCTGACAAGGGACTTCTCCAGTTCGATCTATGG---GGCAAG---TCTGACCCCAT 55443 || || |||| ||||||||||||| | ||| | ||| ||||||| | Sbjct 8798 TCCCGCCTCTGAGGGTATTCTCCAGTTCGACATGTGGAATGTGAAGCCTTCTGACCTCTG 8739 Query 55444 G---TTTGACAAGTT---GAAGCATGACATTCACTTGTGGGGCCTACGCAACTCCCTGCT 55497 | | || || | | |||| | || | | ||| | |||||| ||||| Sbjct 8738 GGACTGGGAGAACCTCCGGGAGCAGGTCAAGGA---GCACGGCATTCGCAACAGTCTGCT 8682 Query 55498 CGTGGCGCCAATGCCAACCGCGTCGACGGCTCAGATCATGGGCAACAACGAGGCGTTCGA 55557 | || || ||||| || || || | |||||| |||||||||||||| ||||| Sbjct 8681 GCTTGCCCCTATGCCTACTGCCAGTACTTCGCAGATCCTGGGCAACAACGAGTGCTTCGA 8622 Query 55558 GCCGTACACGACCAACATCTACCTGCGCCGGACCCTAGCAGGTGAGTTTGTCATGATCAA 55617 ||| ||||| |||||||||||| |||||| ||| || || ||||| || | || Sbjct 8621 GCCTTACACCTCCAACATCTACCAGCGCCGTGTCCTCGCTGGCGAGTTC--CAGG-TCGT 8565 Query 55618 CAAGCAC---CTCGTCAAGGACCTGCAGAAGATCAACAAGTGGAACCCGCAG--ATCAAG 55672 ||| | | || |||||||||| | || | |||| | | | || || Sbjct 8564 CAACCCCTGGCTGCTCAAGGACCTTGTTGACATGGGCCTGTGGT--CGGATGCCATGAAA 8507 Query 55673 A--CGGAT-ATTGTGCGGAACGGGGGGTCCGTCCAGAA--TCTGGAGATTCCTCTGCGTC 55727 | || || |||| |||||| ||| ||||||| || | ||| | || Sbjct 8506 AACCGAATCATTGCCGAGAACGGT---TCCATCCAGAACATCCCCAACATCCCCGCCGAG 8450 Query 55728 -TCAAGGAGATTTACCGGACGGTGTGGGAGATTCCACAGA---AGAGTCTGATTGACATG 55783 |||||| | ||| ||| || ||||||||| | ||| || ||| || | ||| Sbjct 8449 GTCAAGGCCCTCTACAAGACCGTCTGGGAGATTTCGCAGCGCCAG-GTCG--TTCAGATG 8393 Query 55784 AGTGCTGATCGTGGTGCGTACATCGACCAGTCCCAGTCTCTGAACATCTTCATGGAGAAT 55843 ||| || || ||||| | ||| || ||||||||||| || |||||| |||| || | Sbjct 8392 GCTGCCGACCGAGGTGCCTTCATTGATCAGTCCCAGTCCCTCAACATCCACATGAAGGAC 8333 Query 55844 CCTTCACTGGCCAAGTTGAGCTCGATGCACTTTTACGGGTGGAAGAAGGGACTCAAGACG 55903 || | ||| |||| | | | ||||||||| ||| |||||| || || |||||| Sbjct 8332 CCCACCATGGGCAAGATCACCAGCATGCACTTTGCCGGCTGGAAGCTCGGCCTGAAGACG 8273 Query 55904 GGTATGTACTATCTGCGGAC 55923 || |||||||| ||||| || Sbjct 8272 GGCATGTACTACCTGCGAAC 8253 >seq267 Length=23596 Score = 152 bits (168), Expect = 6e-32 Identities = 244/347 (70%), Gaps = 10/347 (3%) Strand=Plus/Minus Query 117299 AGGCGAGTGAAAATGTAACGAGAGCTTGCAGCATCCTTGCCACCAGCAAGACGCGTACCG 117358 || ||||| || | ||||||| || || |||||| ||||| || || || | |||| Sbjct 4757 AGTCGAGTAAAGGTATAACGAGGACTGGCGGCATCCGAACCACCTGCGAGTCGAGAACCG 4698 Query 117359 AATTGTCCACTCGGCTCCAAGAGGTTCAGGTTGTTGGCGCCCACAAAGTTTTGAGCCAAG 117418 || | |||||| ||||| | | ||| | |||||| | ||||||||||| || |||| Sbjct 4697 AAGTTTCCACTTGGCTCTAGGCAGTTGATGTTGTTCGATCCCACAAAGTTCTGGGCCAGA 4638 Query 117419 TTGACAATCGTACCTTGGAGGCTCGCCTCACCATGGTGATACGCCGTCTGCTCCGCCACG 117478 || || || ||||| || ||||| ||||| || |||||||| || | ||| Sbjct 4637 CCGATGATGGTCTGCTGGAGAGATGCTTCACCGTGGTGGTATGCCGTCTGTTCAGACACA 4578 Query 117479 TAGCCCGCCAGCTGAGCCACCTTCATGTC--TGACGTCAGGTTCTTCTTGAGGCAGGCAT 117536 || || |||| | |||||||| |||| |||| |||||| |||||| ||| || | Sbjct 4577 TAACCAGCCAATTCCACCACCTTCTTGTCCTTGAC--CAGGTTTCTCTTGAAGCAAGCGT 4520 Query 117537 AAATCACCTTGCGCTGACTTGGCTTCAGACCATCCGCCACGTGAGGGATCGAACGCTTGA 117596 | | ||||||||||||| ||||| | |||||| || ||||||||| ||| | Sbjct 4519 AGAGAACCTTGCGCTGACCAGGCTTGAAGCCATCCAGGACCGAAGGGATCGATCGC---A 4463 Query 117597 TGTCCTCAGC---GCTAAAGTTGGCCAAGTCCCGGTGGATGAAATCA 117640 ||| ||||| ||| ||| | | ||||||| |||||||||| Sbjct 4462 TGTTATCAGCCATGCTGAAGAGGATGAGCTCCCGGTTGATGAAATCA 4416 Score = 129 bits (142), Expect = 6e-25 Identities = 205/294 (70%), Gaps = 0/294 (0%) Strand=Plus/Minus Query 152026 CGCGTGAAGATGTATCGGGAGCTGGCCGCATCCTTGCCACCTGCCAGCCGCGTTCCAAAC 152085 || || ||| | || || | ||||| |||||| |||||||| || || | || || Sbjct 4754 CGAGTAAAGGTATAACGAGGACTGGCGGCATCCGAACCACCTGCGAGTCGAGAACCGAAG 4695 Query 152086 TGTCCAGAGGGCTCGAGGAGGTTGAGGTTGTTGGCGCCCACGAAATTCTGAGCCAAATTC 152145 | |||| ||||| ||| ||||| |||||| | ||||| || ||||| |||| | Sbjct 4694 TTTCCACTTGGCTCTAGGCAGTTGATGTTGTTCGATCCCACAAAGTTCTGGGCCAGACCG 4635 Query 152146 ACAATCGTGCCCTGCAGACTCGCTTCACCGTGGTGATACGCCGTCTGCTCCGCGATGTAT 152205 | || || ||| ||| |||||||||||||| || |||||||| || | | || Sbjct 4634 ATGATGGTCTGCTGGAGAGATGCTTCACCGTGGTGGTATGCCGTCTGTTCAGACACATAA 4575 Query 152206 CCCGCCAACTGCGCCACCTTCATGTCCGTCGTCAGGTTCTTCTTGAGACAGGCGTAAATC 152265 || ||||| | | |||||||| ||||| | |||||| |||||| || ||||| | Sbjct 4574 CCAGCCAATTCCACCACCTTCTTGTCCTTGACCAGGTTTCTCTTGAAGCAAGCGTAGAGA 4515 Query 152266 ACCTTGCGCTGGGATGGTTTCAAACCGTCCACCACGTGAGGAATCGAACGCTTG 152319 ||||||||||| || || || || |||| || ||| ||||| ||| || Sbjct 4514 ACCTTGCGCTGACCAGGCTTGAAGCCATCCAGGACCGAAGGGATCGATCGCATG 4461 Score = 96.9 bits (106), Expect = 4e-15 Identities = 229/341 (67%), Gaps = 4/341 (1%) Strand=Plus/Minus Query 118003 GTTCAGCACGAGCCCCTTGATATGGGAACCGTCCAGATCCGCATCGGTCATGATCATCAG 118062 ||| | || ||| ||||||||||| ||| || ||||| ||| |||||||||||||| Sbjct 4005 GTTGATCAGGAGACCCTTGATATGACTACCATCGTGATCCTGATCAGTCATGATCATCAG 3946 Query 118063 GCGGCCGTACCGTAAATCTCTCAGGGAGT-TATAAACCTTACCATGTTGGAGCCCGAGGA 118121 ||||||| || || |||| | | | | || |||| || | || || |||| Sbjct 3945 ATGGCCGTATCG-AAGACTCTTGGTGTCTGTGTACACCTGCTTGTGCTTCAGACCCAGGA 3887 Query 118122 TCTTTTTAAGGTTGGAAAATTCCTCATTTTCCGTCACCTGTTTTATGGTGGCGTCCCGAA 118181 || || | ||| | ||||| || | || | ||| | | | |||| || || | Sbjct 3886 ACTGCTTGATGTTCTGGATTTCCTGGTTCTTGGTGATCTGGTCGACGCTGGCATCGCGGA 3827 Query 118182 CGTTGCGCGGCTTACCCCGCAGTGGAAACACGCCAAACTTGTCACGGCCCA-CAACGCTC 118240 ||||| || |||||| || ||||| || || |||| | ||| || | | | |||| Sbjct 3826 CGTTGAGCATCTTACCACGGAGTGGGAAGACACCAATGTGGTCGGGGTCAAGGATGGCTC 3767 Query 118241 AAGCCGGCAATAGCAAGGGCCTTCGCCGAGTCACCCTCGGTAATAATAAGAGTGCACTCG 118300 || | || ||| || |||| || |||||||| || || | || ||||||||||| Sbjct 3766 -GTCCAGAAACAGCCAGACCCTTGGCGGAGTCACCTTCAGTCAGGATCAGAGTGCACTCA 3708 Query 118301 GTGCTGCGATGAGTACCGGCCCAATTAGCATCATCCAGCTT 118341 || || ||||||| ||| | || || || ||||||| Sbjct 3707 TGGCCTCGGCGAGTACCTGCCAAGTTGGCCTCGACCAGCTT 3667 >seq951 Length=13420 Score = 100 bits (110), Expect = 3e-16 Identities = 535/836 (64%), Gaps = 58/836 (7%) Strand=Plus/Minus Query 74463 TAATCACCGACCCGCTTTTCAAAAAAGTTGGTCTTCCCTTCCAACGAGATGTTCTCCATC 74522 || |||||||| ||||| || || ||||||||||| || | | |||||||||||||| Sbjct 6652 TAGTCACCGACACGCTTCTCGAAGAAGTTGGTCTTGCCACCGAGGGAGATGTTCTCCATG 6593 Query 74523 CAGTCGAAAGGGTTCTTTGCACCGTAAATAGGCTTCTCCC--CAAACTGTGCC-ATGAGG 74579 ||||||| ||||| | || ||| | |||||| | | | | | | |||| Sbjct 6592 AAGTCGAAGGGGTTGGTGGCCTTGTAGAC---CTTCTCGTTGCCGAGGGCGACGAGGAGG 6536 Query 74580 CGATCCGCCACAAATTGAATGTACTGCGTCATTTCTCCCGCATCCATGCCGATGAGTTTG 74639 || || || || || | ||||||||| |||| | || | |||||||| || | Sbjct 6535 CGGTCGGCGACGAACTCGATGTACTGCTTCATGAGGTCGGCGTTCATGCCGAGCAGGGCG 6476 Query 74640 CACGGCAGTGCCTCGGTGATAAACTCACTCTCCACCTCGCAAGCCCATTGGACA--ATCT 74697 || || || |||||||| | ||||| ||| | | | | ||| || | || | Sbjct 6475 CAGGGGAGGGCCTCGGTCAGGAACTCCTGCTCAA--TGGTGACGGCATCGGTGATGATGT 6418 Query 74698 TGTGAATGTCTT------TGGAAGGGCACTTTTCCCTCAGGTGAGAGTAAAGC-GTCACG 74750 || ||| | | ||| | ||| ||| ||||| |||| || | || | Sbjct 6417 CCTGGATGACCTGCTTGCTGGCACGGCCCTTG------AGGTGGGAGTGGAGGAGGCATG 6364 Query 74751 GCAAACTCCTGATGCGAG--CCTTCATCTCTGCTTATCAATTCATTCGAAAACGAAAGGC 74808 |||| || | || || || || || | || | || || ||||| | |||| Sbjct 6363 -CAAAGTC--GGTGTGAAGACCCTCGTCACGAGAGATGAGCTCGTTGGAAAAGGTCAGGC 6307 Query 74809 CAGGCATAAGTCCACGCTTCTTCAACCAAAAGATGGCACAGAAGGAACCACTGAAGAAGA 74868 ||||||| || ||||||||||| | ||| ||||||| |||| ||| |||||||||| Sbjct 6306 CAGGCATGAGGCCACGCTTCTTGAGCCAGAAGATGGAGGCAAAGGCACCGCTGAAGAAGA 6247 Query 74869 TGCCTTCGACACACGCAAAGGCGACAAGGCGTTGCGCGAACG----GTGCATCGGAAGTC 74924 | || ||||| ||||| ||||| || || || || || | || | | ||| Sbjct 6246 TACCCTCGACGGCAGCAAAAGCGACGAGACGCTGAGCAAAGGACGAGTTCTT-----GTC 6192 Query 74925 ----ATCCAAGTCTGA--GCCCATTCAGCTTTTCGTTTGACCGCA-GGGACAGTATCGAT 74977 ||||| || || ||||| || || ||| | | ||| |||| || || || Sbjct 6191 CTGGATCCA--TCGGATGGCCCAGTCGGC-CTTCTTGCGGATGCAGGGGATGGTCTCAAT 6135 Query 74978 CGCTTGGAAGAGGCTTGCCTTC--TCTTCGGGATCCTTGACGAGCTTGTCAATCATAAGT 75035 || | ||||||| | ||| | | || ||||||| | ||||||| | || Sbjct 6134 GGCGTTGAAGAGG--TAGGTTCGTTGAGCAGGCTCCTTGATGTAGGTGTCAATGAGGAGC 6077 Query 75036 GAGTACGTCTCCGAATGAATCGACTCGTTGAACGACTGGTACGCGTAGAAAGACCGCGCC 75095 ||||| ||||| || || || ||| | | |||| | ||||||| | || ||| Sbjct 6076 GAGTAGGTCTCGGAGTGGATGTTCTCCATCATGATCTGGAAGCCGTAGAAGCATCGGGCC 6017 Query 75096 TCTGCAATCTGTACAT--CCTTTGAAAAATTCATGTCGATATTCTCCATGACGATGCCGT 75153 || | ||||| || | || |||| || | | | ||||| |||||||||||| Sbjct 6016 TCGGGGATCTGGACCTCGCCGCTGAATCGCTC--GACAAGGTTCTCGTTGACGATGCCGT 5959 Query 75154 CCGAGGCGGCGAAAAAAGCCAGTACCATTTTGATAAAGTGGCGCTCATCGTCAGT---GA 75210 | || || ||||| || || || | || ||| |||| ||| |||| | Sbjct 5958 CAGATGCAGCGAAGAAGGCGAGGATGTGGGAGACGAAGAACTGCTCGTCGGCAGTCAGGC 5899 Query 75211 GTTTGTCCCAATCCTTCAGGTCCCCCGCCAAATCAATCTCCTCGACCGTCCAGAAA 75266 | |||| ||| || | || ||| | ||||||||||||||| | ||||||||| Sbjct 5898 GGTTGTTCCAGTCGTGGAGATCCTTGGATAAATCAATCTCCTCGGCAGTCCAGAAA 5843 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 547112760861400