Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Fusarium_20tucumaniae_20[genbank_20GCA_5F001680535.1_202016-07-06] 15,093 sequences; 48,383,620 total letters Query= NC_033780.1 Length=144510 Score E Sequences producing significant alignments: (Bits) Value seq1264 150 2e-31 seq2334 140 3e-28 seq3844 116 3e-21 seq473 82.4 7e-11 >seq1264 Length=10365 Score = 150 bits (166), Expect = 2e-31 Identities = 174/229 (76%), Gaps = 4/229 (2%) Strand=Plus/Plus Query 41636 CCGCCGCGTAGACGTAACACCAGATGCAGCGTGCTCTCCTTCTGAATGTTATAGTCGGAG 41695 ||||| || ||||| | || ||||| || || ||||||||| ||||| |||||||| Sbjct 3760 CCGCCACGGAGACGGAGAACAAGATGAAGGGTCGACTCCTTCTGGATGTTGTAGTCGGAC 3819 Query 41696 AGGGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAATATCAGGCGCTGTTGGTCCGCGGGA 41755 |||||||| |||| || |||||||| || || || || || ||||| ||||| | ||| Sbjct 3820 AGGGTGCGACCGTCTTCCAGCTGCTTACCAGCAAAGATAAGTCGCTGCTGGTCAGGGGGG 3879 Query 41756 ACGCTCTCCTTGTCCATGATTTTTTG-CTTCAACGACGACACAG-TGTCGCTCGACTCCA 41813 | || |||||||||| ||| | || | ||||| || | || | | ||||||||||||| Sbjct 3880 ATGCCCTCCTTGTCC-TGAATCTTGGACTTCA-CGTTGTCAATGGTATCGCTCGACTCCA 3937 Query 41814 CCTCCACCGTTATCGTTTTACCCGTCAGCGTCTTTACGAAAATCTGCAT 41862 |||||| || || || || || || || ||||| || || |||||||| Sbjct 3938 CCTCCAGAGTGATGGTCTTTCCAGTGAGAGTCTTGACAAAGATCTGCAT 3986 Score = 134 bits (148), Expect = 1e-26 Identities = 168/228 (74%), Gaps = 2/228 (1%) Strand=Plus/Plus Query 41636 CCGCCGCGTAGACGTAACACCAGATGCAGCGTGCTCTCCTTCTGAATGTTATAGTCGGAG 41695 || ||||| ||||| | ||||| ||||| || ||||||||| ||||| |||||| | Sbjct 3988 CCACCGCGCAGACGAAGAACCAGGTGCAGAGTCGACTCCTTCTGGATGTTGTAGTCGCTG 4047 Query 41696 AGGGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAATATCAGGCGCTGTTGGTCCGCGGGA 41755 || || || |||| ||||||||||||||||| || || || |||||||| || | ||| Sbjct 4048 AGAGTTCGGCCGTCCTCGAGCTGCTTGCCGGCAAAGATGAGTCGCTGTTGATCAGGAGGA 4107 Query 41756 ACGCTCTCCTTGTCCATGATTTTTTGCTTCAACGACGAC-ACAGTGTCGCTCGACTCCAC 41814 | || ||||||||| || | || | || || | | | |||||| ||| ||||| Sbjct 4108 ATGCCTTCCTTGTCC-TGGATCTTCGATTTCACATTGTCAATGGTGTCGGACGATTCCAC 4166 Query 41815 CTCCACCGTTATCGTTTTACCCGTCAGCGTCTTTACGAAAATCTGCAT 41862 ||| | || || || || || || || ||||| ||||| |||||||| Sbjct 4167 CTCAAGGGTGATGGTCTTTCCGGTGAGGGTCTTGACGAAGATCTGCAT 4214 Score = 125 bits (138), Expect = 7e-24 Identities = 139/183 (76%), Gaps = 2/183 (1%) Strand=Plus/Plus Query 41671 CTCCTTCTGAATGTTATAGTCGGAGAGGGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAA 41730 ||||||||||||||| ||||||| ||||||||| | || || ||||||||||||||||| Sbjct 4251 CTCCTTCTGAATGTTGTAGTCGGCGAGGGTGCGGCCATCCTCAAGCTGCTTGCCGGCGAA 4310 Query 41731 TATCAGGCGCTGTTGGTCCGCGGGAACGCTCTCCTTGTCCATGATTTTTTGCTTCAACGA 41790 ||||||||||| ||||| | |||| | |||||| || ||| || ||| ||| Sbjct 4311 AATCAGGCGCTGCTGGTCAGGAGGAATACCCTCCTTATCTTGGATCTTCGACTT-GACGT 4369 Query 41791 CGAC-ACAGTGTCGCTCGACTCCACCTCCACCGTTATCGTTTTACCCGTCAGCGTCTTTA 41849 | | | |||||| ||||||||||| | || || || ||||| || || ||||| | Sbjct 4370 TGTCGATCGTGTCGGAAGACTCCACCTCGAGGGTGATAGTCTTACCAGTGAGGGTCTTGA 4429 Query 41850 CGA 41852 ||| Sbjct 4430 CGA 4432 Score = 111 bits (122), Expect = 1e-19 Identities = 106/136 (78%), Gaps = 0/136 (0%) Strand=Plus/Plus Query 41635 GCCGCCGCGTAGACGTAACACCAGATGCAGCGTGCTCTCCTTCTGAATGTTATAGTCGGA 41694 ||| || || || || | || || || || || ||||||||| ||||| || ||||| Sbjct 4490 GCCACCACGAAGGCGGAGGACGAGGTGGAGGGTCGACTCCTTCTGGATGTTGTAATCGGA 4549 Query 41695 GAGGGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAATATCAGGCGCTGTTGGTCCGCGGG 41754 ||||||||| | || || ||||||||||||||||| ||||| ||||| ||||| | ||| Sbjct 4550 GAGGGTGCGGCCATCCTCAAGCTGCTTGCCGGCGAAAATCAGACGCTGCTGGTCGGGGGG 4609 Query 41755 AACGCTCTCCTTGTCC 41770 | || |||||||||| Sbjct 4610 GATGCCCTCCTTGTCC 4625 >seq2334 Length=6172 Score = 140 bits (154), Expect = 3e-28 Identities = 171/231 (74%), Gaps = 2/231 (1%) Strand=Plus/Minus Query 41636 CCGCCGCGTAGACGTAACACCAGATGCAGCGTGCTCTCCTTCTGAATGTTATAGTCGGAG 41695 || || || || || | ||||| || || |||||||||||||| ||||| |||||| Sbjct 918 CCACCACGCAGGCGGAGGACCAGGTGGAGGGTGCTCTCCTTCTGGATGTTGTAGTCGCTC 859 Query 41696 AGGGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAATATCAGGCGCTGTTGGTCCGCGGGA 41755 |||||||| | || |||||||||||||| || || || || ||||| ||||| | ||| Sbjct 858 AGGGTGCGGCCATCCTCGAGCTGCTTGCCAGCAAAGATGAGTCGCTGCTGGTCGGGGGGG 799 Query 41756 ACGCTCTCCTTGTCCATGATTTTTTGCTTCAACGACGAC-ACAGTGTCGCTCGACTCCAC 41814 | || |||||||||| ||| || ||| ||| | | | |||||| |||||||| Sbjct 798 ATGCCCTCCTTGTCCTGGATCTTGGACTT-GACGTTGTCGATGGTGTCGGAAGACTCCAC 740 Query 41815 CTCCACCGTTATCGTTTTACCCGTCAGCGTCTTTACGAAAATCTGCATGTT 41865 ||| | || || || || ||||| || ||||| || || |||||||| || Sbjct 739 CTCGAGGGTGATTGTCTTCCCCGTGAGGGTCTTGACAAAGATCTGCATCTT 689 >seq3844 Length=3219 Score = 116 bits (128), Expect = 3e-21 Identities = 137/183 (75%), Gaps = 2/183 (1%) Strand=Plus/Minus Query 41673 CCTTCTGAATGTTATAGTCGGAGAGGGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAATA 41732 ||||||| ||||| |||||||| ||||| || | || || ||||||||||| ||||| | Sbjct 349 CCTTCTGGATGTTGTAGTCGGAAAGGGTTCGGCCATCCTCCAGCTGCTTGCCAGCGAAGA 290 Query 41733 TCAGGCGCTGTTGGTCCGCGGGAACGCTCTCCTTGTCCATGATTTTTTGCTTCAACGACG 41792 |||| ||||| ||||||| ||| | || |||||||||| ||| || ||| || | Sbjct 289 TCAGTCGCTGCTGGTCCGGGGGGATGCCCTCCTTGTCCTGGATCTTGGACTT-GACATTG 231 Query 41793 AC-ACAGTGTCGCTCGACTCCACCTCCACCGTTATCGTTTTACCCGTCAGCGTCTTTACG 41851 | | ||||| ||||| ||||| | || || || || |||||||| ||||| ||| Sbjct 230 TCAATGGTGTCCGAGGACTCGACCTCGAGGGTGATGGTCTTGCCCGTCAGGGTCTTCACG 171 Query 41852 AAA 41854 ||| Sbjct 170 AAA 168 >seq473 Length=20196 Score = 82.4 bits (90), Expect = 7e-11 Identities = 83/108 (77%), Gaps = 0/108 (0%) Strand=Plus/Minus Query 85800 CGTATCGCACCTCGTTCCGGCCTCGCCAGCAAGCACGGTATCGACGTGGGCGCCGGGGTC 85859 || || || || || ||||| |||||| ||||||| |||||| |||||| || ||| Sbjct 13316 CGCATTGCCCCCCGATCCGGTCTCGCCTCCAAGCACTTCATCGACACGGGCGCTGGTGTC 13257 Query 85860 ATCGACGCCGACTACCGCGGAAACGTCATCATCGTACTCTTCAACCAC 85907 ||||||||||||||| | || | |||| || | |||||||||||| Sbjct 13256 ATCGACGCCGACTACAGAGGCCAGGTCAAGGTCCTCCTCTTCAACCAC 13209 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 462216780571600