Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Fusarium_20tucumaniae_20[genbank_20GCA_5F001680595.1_202016-07-06] 22,979 sequences; 49,676,379 total letters Query= NC_002331.1 Length=178733 Score E Sequences producing significant alignments: (Bits) Value seq2302 131 2e-25 seq3152 125 8e-24 seq1887 93.3 5e-14 >seq2302 Length=6171 Score = 131 bits (144), Expect = 2e-25 Identities = 151/201 (75%), Gaps = 2/201 (1%) Strand=Plus/Minus Query 42987 GTGCTCTCCTTTTGAATATTGTAATCAGCCAGAGTCCGCTCGTCATCTAGCTGCTTACCA 43046 ||||||||||| || || ||||| || ||| || || | || || |||||||| ||| Sbjct 872 GTGCTCTCCTTCTGGATGTTGTAGTCGCTCAGGGTGCGGCCATCCTCGAGCTGCTTGCCA 813 Query 43047 GCGAATATGAGTCGCTGCTGGTCGGCCGGCACGCTCTCCTTGTCCATGATTTTTTGTTTG 43106 || || ||||||||||||||||||| || | || |||||||||| ||| || ||| Sbjct 812 GCAAAGATGAGTCGCTGCTGGTCGGGGGGGATGCCCTCCTTGTCCTGGATCTTGGACTTG 753 Query 43107 AGCGTCG-CCACCGTGTCGCTCGATTCCACATCGACCGTGATGGTTTTGCCCGTTAGCGT 43165 | ||| | | | |||||| || ||||| |||| ||||| || || ||||| || || Sbjct 752 A-CGTTGTCGATGGTGTCGGAAGACTCCACCTCGAGGGTGATTGTCTTCCCCGTGAGGGT 694 Query 43166 CTTTACAAAGATTTGCAtttt 43186 ||| |||||||| ||||| || Sbjct 693 CTTGACAAAGATCTGCATCTT 673 >seq3152 Length=5241 Score = 125 bits (138), Expect = 8e-24 Identities = 145/193 (75%), Gaps = 2/193 (1%) Strand=Plus/Plus Query 42992 CTCCTTTTGAATATTGTAATCAGCCAGAGTCCGCTCGTCATCTAGCTGCTTACCAGCGAA 43051 |||||| || || ||||| || | ||| || || |||| || |||||||||||||| || Sbjct 3793 CTCCTTCTGGATGTTGTAGTCGGACAGGGTACGACCGTCTTCCAGCTGCTTACCAGCAAA 3852 Query 43052 TATGAGTCGCTGCTGGTCGGCCGGCACGCTCTCCTTGTCCATGATTTTTTGTTTGAGCGT 43111 || |||||||||||||| | || | || |||||||||| ||| | || | | ||| Sbjct 3853 GATAAGTCGCTGCTGGTCAGGGGGGATGCCCTCCTTGTCC-TGAATCTTGGACTTCACGT 3911 Query 43112 CG-CCACCGTGTCGCTCGATTCCACATCGACCGTGATGGTTTTGCCCGTTAGCGTCTTTA 43170 | | | || |||||||| ||||| || | |||||||| || || || || ||||| | Sbjct 3912 TGTCAATGGTATCGCTCGACTCCACCTCCAGAGTGATGGTCTTTCCAGTGAGAGTCTTGA 3971 Query 43171 CAAAGATTTGCAt 43183 ||||||| ||||| Sbjct 3972 CAAAGATCTGCAT 3984 Score = 98.7 bits (108), Expect = 1e-15 Identities = 137/192 (71%), Gaps = 0/192 (0%) Strand=Plus/Plus Query 42992 CTCCTTTTGAATATTGTAATCAGCCAGAGTCCGCTCGTCATCTAGCTGCTTACCAGCGAA 43051 |||||| || || ||||| || ||||| || |||| || |||||||| || || || Sbjct 4021 CTCCTTCTGGATGTTGTAGTCGCTGAGAGTTCGGCCGTCCTCGAGCTGCTTGCCGGCAAA 4080 Query 43052 TATGAGTCGCTGCTGGTCGGCCGGCACGCTCTCCTTGTCCATGATTTTTTGTTTGAGCGT 43111 ||||||||||| || || | || | || ||||||||| ||| || ||| | | Sbjct 4081 GATGAGTCGCTGTTGATCAGGAGGAATGCCTTCCTTGTCCTGGATCTTCGATTTCACATT 4140 Query 43112 CGCCACCGTGTCGCTCGATTCCACATCGACCGTGATGGTTTTGCCCGTTAGCGTCTTTAC 43171 | | |||||| ||||||||| || | |||||||| || || || || ||||| || Sbjct 4141 GTCAATGGTGTCGGACGATTCCACCTCAAGGGTGATGGTCTTTCCGGTGAGGGTCTTGAC 4200 Query 43172 AAAGATTTGCAt 43183 ||||| ||||| Sbjct 4201 GAAGATCTGCAT 4212 Score = 86.0 bits (94), Expect = 7e-12 Identities = 129/181 (71%), Gaps = 2/181 (1%) Strand=Plus/Plus Query 42992 CTCCTTTTGAATATTGTAATCAGCCAGAGTCCGCTCGTCATCTAGCTGCTTACCAGCGAA 43051 |||||| ||||| ||||| || || || || || | || || |||||||| || ||||| Sbjct 4249 CTCCTTCTGAATGTTGTAGTCGGCGAGGGTGCGGCCATCCTCAAGCTGCTTGCCGGCGAA 4308 Query 43052 TATGAGTCGCTGCTGGTCGGCCGGCACGCTCTCCTTGTCCATGATTTTTTGTTTGAGCGT 43111 || || ||||||||||| | || | | |||||| || ||| || |||| ||| Sbjct 4309 AATCAGGCGCTGCTGGTCAGGAGGAATACCCTCCTTATCTTGGATCTTCGACTTGA-CGT 4367 Query 43112 CG-CCACCGTGTCGCTCGATTCCACATCGACCGTGATGGTTTTGCCCGTTAGCGTCTTTA 43170 | | | ||||||| || ||||| |||| ||||| || || || || || ||||| | Sbjct 4368 TGTCGATCGTGTCGGAAGACTCCACCTCGAGGGTGATAGTCTTACCAGTGAGGGTCTTGA 4427 Query 43171 C 43171 | Sbjct 4428 C 4428 >seq1887 Length=5954 Score = 93.3 bits (102), Expect = 5e-14 Identities = 129/181 (71%), Gaps = 0/181 (0%) Strand=Plus/Minus Query 42994 CCTTTTGAATATTGTAATCAGCCAGAGTCCGCTCGTCATCTAGCTGCTTACCAGCGAATA 43053 |||| || || ||||| || | || || || | || || |||||||| |||||||| | Sbjct 4641 CCTTCTGGATGTTGTAGTCGGAAAGGGTTCGGCCATCCTCCAGCTGCTTGCCAGCGAAGA 4582 Query 43054 TGAGTCGCTGCTGGTCGGCCGGCACGCTCTCCTTGTCCATGATTTTTTGTTTGAGCGTCG 43113 | |||||||||||||| | || | || |||||||||| ||| || |||| | Sbjct 4581 TCAGTCGCTGCTGGTCCGGGGGGATGCCCTCCTTGTCCTGGATCTTGGACTTGACATTGT 4522 Query 43114 CCACCGTGTCGCTCGATTCCACATCGACCGTGATGGTTTTGCCCGTTAGCGTCTTTACAA 43173 | | ||||| || || || |||| |||||||| |||||||| || ||||| || | Sbjct 4521 CAATGGTGTCCGAGGACTCGACCTCGAGGGTGATGGTCTTGCCCGTCAGGGTCTTCACGA 4462 Query 43174 A 43174 | Sbjct 4461 A 4461 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 571653352542120