Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Fusarium_20tucumaniae_20[genbank_20GCA_5F001680595.1_202016-07-06] 22,979 sequences; 49,676,379 total letters Query= NC_004156.2 Length=231621 Score E Sequences producing significant alignments: (Bits) Value seq3398 233 3e-56 seq8513 161 1e-34 >seq3398 Length=5185 Score = 233 bits (258), Expect = 3e-56 Identities = 571/851 (67%), Gaps = 37/851 (4%) Strand=Plus/Minus Query 125019 ATTTGGGAAATGTACAAAAAGGCTCAGGCCTCCTTTTGGACGGTCGAAGAGGTCGATCTG 125078 || ||| | |||||||| ||||| ||||||| || ||||| | ||| ||| | ||| | Sbjct 1830 ATCTGGCAGATGTACAAGAAGGCCGAGGCCTCTTTCTGGACTGCCGAGGAGATTGATTTA 1771 Query 125079 TCCAAGGACCTGTACGATTGGGAGACTCGTTTGACTGAAACTGAGCGAG-AGTTTATA-- 125135 |||||||| || |||| ||| | | || |||||| | || |||| |||| | Sbjct 1770 TCCAAGGATCTCCACGACTGGAACAACCGCCTGACTG---CCGA-CGAGCAGTTCTTCGT 1715 Query 125136 -TCGCACATTTTGGCCTTCTTTGCCGGCTCCGATGGAATCGTCAACGACAATCT-GTTGA 125193 || ||||| | |||||||| || | || || || ||||||||||| || || || || Sbjct 1714 CTCCCACATCCTCGCCTTCTTCGCTGCATCTGACGGCATCGTCAACGAGAACCTTGTCGA 1655 Query 125194 CACGATTCTCTCAAGAGTTGACCATTCCAGAGGTGTCGTGCTTTTACGGATTCCAAATCA 125253 |||||| ||| | || || |||| ||||| ||||| ||||| |||| Sbjct 1654 G-CGATTCAGCGGCGAGGTCCAGATCCCCGAGGCCCGATGCTTCTACGGCTTCCAGATCA 1596 Query 125254 TGATTGAGAACGTGCACTCGGAAATGTACTCTACACTGATTGACATGTACATTCGCGATC 125313 |||| |||||| | ||||| || | ||||| || ||||||| ||||| || | Sbjct 1595 TGATGGAGAACATCCACTCCGAGACCTACTCGCTCCTCATTGACACCTACATCAAGGAGC 1536 Query 125314 CG---CAACGTAAACACATGCTCTTTAACGCAATCGACACGGTGCCGTCTATACGTAAAA 125370 | ||||| | || ||||| ||||| || || || | || | || || || | Sbjct 1535 CTGCTCAACGAACCTAC---CTCTTCAACGCCATTGAGACCATCCCCTGCATCCGCAAGA 1479 Query 125371 AGGCTCAATGGGTGATTCGGTGGATCGATGACGACAAGTCTTCGTACGCCGACAGACTGG 125430 |||| | |||| || || |||||| | ||| | || || || | || | | || | Sbjct 1478 AGGCCGACTGGGCCATCCGATGGATCCAGGACAAGAACTCGTCCTTTGCTCAGCGTCTCG 1419 Query 125431 TGGCATTCGCCGCCGTAGAGGGCATCTTCTTTTCGGGTAGTTTTGCGGCCATCTTTTGGC 125490 | || || || ||||| ||||| |||||||| ||| ||||| ||||||| |||| Sbjct 1418 TCGCTTTTGCTGCCGTCGAGGGTATCTTCTTCAGCGGTGCCTTTGCCTCCATCTTCTGGC 1359 Query 125491 TCAAGAAGCGCGGACTCATGCCCGGACTGACGCACAGTAACGAGTTTATATCTCGAGACG 125550 |||||||||| || |||||||| || ||||| |||||| | || ||||| |||| Sbjct 1358 TCAAGAAGCGTGGCCTCATGCCTGGCCTGACCTTTTCCAACGAGCTCATCTCTCGTGACG 1299 Query 125551 AGGGCCTACACTGTGACTTTGCCATTCTACTGTTTCGCAACTATCTGCGTCCCGAGTGCA 125610 |||| || ||| ||||||| ||| | || | | | | | || | || || Sbjct 1298 AGGGTCTTCACACCGACTTTG-CATGC--CTCCTCCACTCCCACCT------CAAGGGCC 1248 Query 125611 GATCCAGCGATGAAAAGGTCATC---AACATTGTAACCGATGCCGTGAGGATAGAACAAG 125667 | ||||| | |||||||| |||| | ||||||||||| | || || || | Sbjct 1247 GTGCCAGC---AAGCAGGTCATCCAGGACATCATCACCGATGCCGTCACCATTGAGCAGG 1191 Query 125668 AGTTTCTAACCGAATCCCTACCGGTCAGCATGATTGGCATGAACTGCAAGCTAATGTGCG 125727 |||| || ||||| |||| || | | || | ||||||||| | | || ||| Sbjct 1190 AGTTCCTGACCGAGGCCCTCCCCTGCGCCCTGCTCGGCATGAACGCCGACCTCATGAAGC 1131 Query 125728 AGTACATAGAGTTTGTGGCAGATCGTCTACTGTACGAGTTGATTGGC--CG-CAAGATTT 125784 ||||||| ||||| || || || || || || || | ||| || ||| | | Sbjct 1130 AGTACATCGAGTTCGTCGCCGACCGCCTCCT---CGTCGCCCTCGGCAACGAGAAGGTCT 1074 Query 125785 ACAACGCCAAGAATCCCTTTGATTTCATGACCAGCATATCACTAGAGGGTAAGACCAACT 125844 |||| |||| || ||||| || |||||| | ||| || || | || |||||||||| Sbjct 1073 ACAAGGCCACCAACCCCTTCGACTTCATGGAGAACATCTCCCTCGGTGGCAAGACCAACT 1014 Query 125845 TTTTCGAGAAG 125855 | ||||||||| Sbjct 1013 TCTTCGAGAAG 1003 >seq8513 Length=2088 Score = 161 bits (178), Expect = 1e-34 Identities = 308/449 (69%), Gaps = 10/449 (2%) Strand=Plus/Minus Query 96876 CAGGGCGGCAATAAACGGCCAGGCGCTATAGCCGTCTACTTGGAACCTTGGCACGCGGAC 96935 ||||| ||||| || || || || || | ||| ||||| | || || |||||||| || Sbjct 1380 CAGGGTGGCAACAAGCGACCTGGTGCCTTTGCCATCTACCTTGAGCCCTGGCACGCAGAT 1321 Query 96936 GTTTTTGACTTTATCGAGATGCGCAAAAACTCTGGCTTTGAAGAGGCACGAGCCAGGGAC 96995 || ||||| || | || ||||||| ||| ||| || |||| || ||| | ||| Sbjct 1320 GTCTTTGAGTTCCTTGACCTGCGCAAGAACCACGGCAAGGAGGAGGTCCGCGCCCGCGAC 1261 Query 96996 TTGTTTTATGCACTCTGGGTGCCAGATTTGTTCATGAAGCGCGTC---AACGACGGTGGC 97052 |||| || |||||| | || ||| | ||||||||||| ||| || |||||| Sbjct 1260 CTGTTCCTGGCTCTCTGGATTCCCGATCTCTTCATGAAGCGTGTCGAGAAGAACGGTG-- 1203 Query 97053 TACTGGAGCCTAATGTGCCCCGACTCGTCACCCGGTCTGTCCGATTGCTGGGGCGAAGAG 97112 |||||| ||| ||||| ||| || || ||||||||| |||| |||| ||||| ||| Sbjct 1202 -ACTGGACCCTCATGTGTCCCAACGAGTGCCCCGGTCTGGCCGACTGCTATGGCGAGGAG 1144 Query 97113 TTTGAGGCCAAGTACACGGCCTACGAGCAAGAGGGC-CGATACGTGAGACGAGTCGATGC 97171 || ||||| ||| || ||| | | |||| | || |||| | || | Sbjct 1143 TTCGAGGCTCTTTACGAAAAGTATGAGAAGGCGGGCAAGGGTCGCAAGACCA--TGAAGG 1086 Query 97172 ACGAGAA-CTGTGGAAGGCCATCGTGACGGCTCAGGTAGAGACTGGAACTCCGTACATTC 97230 | |||| || ||| | |||||| | ||| ||| ||||| || | || | ||| | Sbjct 1085 CCCAGAAGCTCTGGTATGCCATCCTCGAGGCGCAGACCGAGACCGGCAACCCCTTCATGC 1026 Query 97231 TCTACAAGGATACCGTGAATCGCAACAGCAACCAACGCCACTTGGGCACCATCAAGGGCT 97290 |||||||||| | || ||||| |||||||| || ||||||||||| ||| Sbjct 1025 TCTACAAGGACCACTGCAACCGCAAGAGCAACCAGAAGAACCTGGGCACCATCCGTAGCT 966 Query 97291 CCAATCTGTGCACGGAAATTGTAGAGTAC 97319 ||||||| ||||| || ||| | |||||| Sbjct 965 CCAATCTCTGCACCGAGATTATCGAGTAC 937 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 740846340008040