Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Fusarium_20tucumaniae_20[genbank_20GCA_5F001680595.1_202016-07-06] 22,979 sequences; 49,676,379 total letters Query= NC_006639.1 Length=24748 Score E Sequences producing significant alignments: (Bits) Value seq6607 104 4e-18 seq4441 98.7 2e-16 >seq6607 Length=2726 Score = 104 bits (114), Expect = 4e-18 Identities = 85/101 (84%), Gaps = 2/101 (2%) Strand=Plus/Minus Query 16433 GCTAAGCGTCATCGCA-GATCTCTTCGAGATAACATCCAAGGAATCACCAAGCCAGCTAT 16491 || |||||||| || | ||| | | ||||| |||||||| || ||||||||||| ||||| Sbjct 1553 GCCAAGCGTCACCGAAAGATTT-TGCGAGACAACATCCAGGGTATCACCAAGCCCGCTAT 1495 Query 16492 CCGTCGTCTGGCTCGTCGTGGTGGAGTCAAGCGTGTCTCTG 16532 ||| ||||| ||||||||||| || ||||||||| |||||| Sbjct 1494 CCGACGTCTCGCTCGTCGTGGCGGTGTCAAGCGTATCTCTG 1454 Score = 84.2 bits (92), Expect = 3e-12 Identities = 117/164 (71%), Gaps = 0/164 (0%) Strand=Plus/Minus Query 16536 TGGTCTATGAAGAGATTCGTGATGTTTTGAAGATCTTCCTCAAGACCGTTATCCATGATG 16595 || |||| ||||||| |||| ||| | |||| ||||||| || || |||| ||| | Sbjct 1398 TGATCTACGAAGAGACCCGTGGTGTCCTCAAGACCTTCCTCGAGGGTGTCATCCGTGACG 1339 Query 16596 CTTTCCACTATACCGAGCACGCTAAACGTAAGACTGTCACCTCCATGGATATCGTCTATG 16655 | || ||| ||||||||||| || || ||||| |||||||| | || | ||||| | Sbjct 1338 CCGTCACCTACACCGAGCACGCCAAGCGCAAGACCGTCACCTCTCTCGACGTGGTCTACG 1279 Query 16656 CATTGAAACGTCAAGGCCGTAAGATTTATGGTTTTGGAAGTTAA 16699 | | || || || ||||| | | || ||||| || ||||| Sbjct 1278 CCCTCAAGCGACAGGGCCGCACCCTCTACGGTTTCGGTGGTTAA 1235 >seq4441 Length=3722 Score = 98.7 bits (108), Expect = 2e-16 Identities = 84/101 (83%), Gaps = 2/101 (2%) Strand=Plus/Plus Query 16433 GCTAAGCGTCATCGCA-GATCTCTTCGAGATAACATCCAAGGAATCACCAAGCCAGCTAT 16491 || ||||| || |||| ||| ||| || || |||||||| || ||||||||||| || || Sbjct 1372 GCCAAGCGCCACCGCAAGAT-TCTACGTGACAACATCCAGGGTATCACCAAGCCCGCCAT 1430 Query 16492 CCGTCGTCTGGCTCGTCGTGGTGGAGTCAAGCGTGTCTCTG 16532 ||| ||||| |||||||| ||||| ||||||||| |||||| Sbjct 1431 CCGACGTCTCGCTCGTCGAGGTGGTGTCAAGCGTATCTCTG 1471 Score = 84.2 bits (92), Expect = 3e-12 Identities = 117/164 (71%), Gaps = 0/164 (0%) Strand=Plus/Plus Query 16536 TGGTCTATGAAGAGATTCGTGATGTTTTGAAGATCTTCCTCAAGACCGTTATCCATGATG 16595 || |||| || |||| || | |||| | |||| ||||||| || ||| || | ||| | Sbjct 1529 TGATCTACGAGGAGACCCGGGGTGTTCTCAAGACCTTCCTCGAGGGCGTCATTCGTGACG 1588 Query 16596 CTTTCCACTATACCGAGCACGCTAAACGTAAGACTGTCACCTCCATGGATATCGTCTATG 16655 | || ||| ||||||||||| || || ||||| ||||| || | || ||||||| | Sbjct 1589 CCGTCACCTACACCGAGCACGCCAAGCGAAAGACCGTCACGTCGCTCGACGTCGTCTACG 1648 Query 16656 CATTGAAACGTCAAGGCCGTAAGATTTATGGTTTTGGAAGTTAA 16699 | | || || |||||||| | | || ||||| || ||||| Sbjct 1649 CCCTCAAGCGACAAGGCCGCACCCTCTACGGTTTCGGTGGTTAA 1692 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 79054190139447