Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Fusarium_20tucumaniae_20[genbank_20GCA_5F001680595.1_202016-07-06] 22,979 sequences; 49,676,379 total letters Query= NC_008603.1 Length=321240 Score E Sequences producing significant alignments: (Bits) Value seq8462 145 2e-29 seq3398 134 3e-26 seq1003 129 1e-24 >seq8462 Length=2633 Score = 145 bits (160), Expect = 2e-29 Identities = 429/657 (65%), Gaps = 7/657 (1%) Strand=Plus/Plus Query 279706 TGTCGGGTGGTTGGAAGATGAAGCTGGCCCTCACTCGCGCCATTCTACTGCGTGCCGATG 279765 |||| ||||||||||||||||||||||| || | || ||||| || | |||||| |||| Sbjct 1285 TGTCTGGTGGTTGGAAGATGAAGCTGGCTCTAGCCCGAGCCATGCTTCAGCGTGCTGATG 1344 Query 279766 TCCTACTGCTTGATGAGCCAACCAACCACATGGACACCACCAACGTAGCCTGGCTAGTGT 279825 |||| || || || || || |||||||| | || ||||| | || ||||| | | Sbjct 1345 TCCTTCTCCTGGACGAACCTACCAACCATCTTGATGTTGCCAACATTGCGTGGCTCGAGA 1404 Query 279826 CCTACCTAACCAGTCTGAAGAATGTTTCTTCCCTCATTGTCTCTCACGACTCTGGCTTCC 279885 |||||| | | || || | | || ||||| ||||||||||||||||||| Sbjct 1405 ACTACCTCAAGACTCATCCCGATATCACCAGTCTGATTGTTTCTCACGACTCTGGCTTCC 1464 Query 279886 TAGATGCCGTGTGCTCTGCCATCATTCACTATGAGCAAAATCTGAAGCTCTCCAAGCACA 279945 | || ||| | | | |||| ||||| |||| || |||||| | ||| Sbjct 1465 TCGACAACGTCACCACCGACATCTACCACTACGAGCCCAACAAGAAGCTGGCTTGCTACA 1524 Query 279946 TCGGCAACCTGTCTGCTTTCGTGGCAAAGCGCCCTGAGGCGGCCGCCTACTATGACCTGA 280005 ||||||||| | || || || | | ||||| ||||| |||||| ||| Sbjct 1525 AGGGCAACCTGGCCGCCTTTGTCGAGATCCGCCCCGAGGCCAAGAGCTACTACACTCTGT 1584 Query 280006 AGGACGCCACCGCCAAGTGGGAATTCCCTGAGCCAGGGTTTCTGGAGGGCATCACATCAA 280065 || | ||| || | ||| | |||||| || || | ||| ||| ||| || | Sbjct 1585 CGGCCTCCAACGTCCAGTTCAAGTTCCCTCCCCCCGGTATCCTGACTGGCGTCAAGTCCA 1644 Query 280066 AGGATCGCGCAATCAT--GAAGCTCCGTGGCGTCTCCTTTGCTTATCCCAATGGCCCCAA 280123 | || || ||||| | | ||| | |||| | | || ||||| | ||||| Sbjct 1645 TGACCCGTGCCATCATCCGCATGTCCAACGTGTCT--TACACGTACCCCAAGGCTCCCAA 1702 Query 280124 -CATCTTCAGCAGT--GTCAACTCGCAGGTTTCTATGAACTCACGGATTGGTGTCATTGG 280180 | | || ||| ||| | ||| | | || || || ||| ||||||| Sbjct 1703 GCCTTCTCTGCATGAGGTCTCTTGCCAGCTGACACTGTCGTCCCGTGTTGCCATCATTGG 1762 Query 280181 ACCCAATGGTGCGGGTAAGTCTACCCTAATCAAAGTCCTGACTGGCGAGACCCAGGCCAC 280240 ||||| || || || ||||||||||| ||||| | || || ||||||||| | || Sbjct 1763 CCCCAACGGAGCTGGCAAGTCTACCCTGATCAAGTTGCTCACCGGCGAGACCATTCCTAC 1822 Query 280241 TGAGGGGTCCGTTTGGAAGCATCCCAACATGCGGATGGCTTACGTCGCTCAGCACGCTTT 280300 | || || |||||| |||||| |||| || | ||| || ||||||||| | Sbjct 1823 TACCGGAAAGGTCGAGAAGCACCCCAACTTGCGTATCGGCTACATCAAGCAGCACGCTCT 1882 Query 280301 CCACCACATCGAGAACCACCTGGACATGACTCCTAACCAATACATTCAGTGGCGCTA 280357 | ||| |||||| || || || | ||| || ||||| ||| |||||||||| || Sbjct 1883 GGAGCACGTCGAGATGCATCTCGAGAAGACCCCCAACCAGTACCTTCAGTGGCGTTA 1939 >seq3398 Length=5185 Score = 134 bits (148), Expect = 3e-26 Identities = 385/586 (66%), Gaps = 17/586 (3%) Strand=Plus/Plus Query 251563 TCGAAGAAATTAGACTTGCCCTCCAGAGAGATTAGCTCCATGAAGTCGAAGGGGTTTGTG 251622 |||||||| || | |||||| | || ||||| ||||||||||||||||||||| ||| Sbjct 1007 TCGAAGAAGTTGGTCTTGCCACCGAGGGAGATGTTCTCCATGAAGTCGAAGGGGTTGGTG 1066 Query 251623 GCATTGTACTGCTTGGGATGGCCAAGTGCTACGAAGATGCGGTCTGCCACAAACTCCAGA 251682 || ||||| ||| | ||| || || |||| || |||||| || || ||||| | Sbjct 1067 GCCTTGTAGACCTTCTCGTTGCCGAGGGCGACGAGGAGGCGGTCGGCGACGAACTCGATG 1126 Query 251683 TACTGTCCCATCAGTTCAGAGTTCATGCCAATCATACGACAAGGAATTGCCTCACAGATG 251742 ||||| ||| || || | ||||||||| | || || || | ||||| | | Sbjct 1127 TACTGCTTCATGAGGTCGGCGTTCATGCCGAGCAGGGCGCAGGGGAGGGCCTCGGTCAGG 1186 Query 251743 AATTCCTTTTCGTTGGCAACTGCCTCCTCCACAATTGCCT---TCACCTG-TGCCAGAGA 251798 || |||| || ||| || || || | || ||| | ||||| | | | | Sbjct 1187 AACTCCTGCTCAATGGTGACGGCATCGGTGATGATGTCCTGGATGACCTGCTTGCTGGCA 1246 Query 251799 CAGCTTGTTCTCCAGCTTTGAGTACAGGAGCTCGCCAAACTGTTGGTGCAGACCCTCGTC 251858 | || || || | |||| ||||| |||| | ||| ||||||||||| Sbjct 1247 CGGC----CCTTGAGGTGGGAGTGGAGGAGGCATGCAAAGTCGGTGTGAAGACCCTCGTC 1302 Query 251859 GCGACTGATGAACTCGTTGGACAGACCCAGGCCAGGCATCACCCCACGGTTCCTGAGCCA 251918 ||| ||||| ||||||||| | |||||||||||| | ||||| ||| ||||||| Sbjct 1303 ACGAGAGATGAGCTCGTTGGAAAAGGTCAGGCCAGGCATGAGGCCACGCTTCTTGAGCCA 1362 Query 251919 GAAGATTGCGCAAAAGGATCCAGAGAACAGCAGACCCTCGACACACACCCATGCAACAAG 251978 |||||| | | ||||| || ||| | | ||||||||| | | || || || Sbjct 1363 GAAGATGGAGGCAAAGGCACCGCTGAAGAAGATACCCTCGACGGCAGCAAAAGCGACGAG 1422 Query 251979 GCGCTCAGCAAACGA------CTTGTCCTGCGACAAGAACTTCTGTGCCCATGCTGCCTT 252032 |||| |||||| || ||||||||| || | | || ||||| | ||||| Sbjct 1423 ACGCTGAGCAAAGGACGAGTTCTTGTCCTG-GA-TCCATCGGATG-GCCCAGTCGGCCTT 1479 Query 252033 CTTTCCAACCGCGGGGATTGTTTCGATTGCATCAAAGAGAGAGTTCCGCTCGGCATCGTC 252092 ||| | | |||||| || || || || | ||||| || | || | ||| || Sbjct 1480 CTTGCGGATGCAGGGGATGGTCTCAATGGCGTTGAAGAGGTAGGTTCGTTGAGCAGGCTC 1539 Query 252093 CTCGATGAGCGCATCAAGCAGGAGAGAGTACATCTCCGAATGGATG 252138 || |||| | |||| ||||| ||||| |||| || |||||| Sbjct 1540 CTTGATGTAGGTGTCAATGAGGAGCGAGTAGGTCTCGGAGTGGATG 1585 >seq1003 Length=11632 Score = 129 bits (142), Expect = 1e-24 Identities = 708/1102 (64%), Gaps = 54/1102 (5%) Strand=Plus/Plus Query 279316 AGGACGAAGCAGAGAAGGAGACTGAGCCAGGTGAGGATCTGTGTGACTGTGATTTCTCGC 279375 ||| ||| || ||| |||| ||| ||||||||||| || ||||| |||||| | Sbjct 3852 AGGCCGAGGCCGAGGAGGATGAGGAGGAGGGTGAGGATCTTTGCAACTGTACTTTCTCTC 3911 Query 279376 TCGCATATGGTGGGAAGATTCTGCTAAACTCTACCCGCCTCAACATCAAGCGTGGCAACC 279435 | || || |||| ||||||||||| ||| || | |||| | ||||||||||| | | Sbjct 3912 TTGCCTACGGTGCCAAGATTCTGCTCAACCAGACTCACCTCCGCCTCAAGCGTGGCCAGC 3971 Query 279436 GGTATGGTCTCATCGGTCCCAATGGAGCGGGTAAGAGCACTCTAATGCGCGCCATTGCAA 279495 | || ||||| ||||||||| || | || ||| |||||| ||||| ||||| | Sbjct 3972 GCTACGGTCTTTGCGGTCCCAACGGTTCCGGCAAGTCCACTCTCATGCGTGCCATCAACA 4031 Query 279496 ACGGTCAGCTGGAAGGATTTCCTAACGCA-TCTGAGGTAAGGACAGTGTATGTAGAGCAC 279554 ||| ||| | | ||| ||||| | ||| ||||| | ||| || | || |||||| Sbjct 4032 ACGAGCAGGTTG-AGGGTTTCCCCAAGCAGAGCGAGGTCAAGACCGTCTTCGTCGAGCAC 4090 Query 279555 GACATCGACTC--CTCTCTCTCGGAT-AGCAC--TGTGTTCGAC--TTCCTAACGTCTGA 279607 ||| | ||||| || | || ||| | ||| | | ||| | || || Sbjct 4091 GACCTGGACTCTGCTGACACTGAGATGACCACCATTGACTGGACCATGAAGAAGCTCGCC 4150 Query 279608 CAATCAGGTTATGGAAATCAGCTCTCCTGAGGAAATCATCCAGAAACTGGAGGCCAATGG 279667 | | ||| | | || ||| | ||||| || || || | || | | | || Sbjct 4151 GAGGCCGGT----GTCACCAACTCCCAGGAGGATGTCGTCAAGCAGCTCAACGACTTCGG 4206 Query 279668 TTTTGATGAAAGAATGCGTAATCT-GCCAG-TAGGTTCTCTGTCGGGTGGTTGGAAGATG 279725 || || ||| || ||| || || | | | || || ||||||||||||||| Sbjct 4207 CTTCACCGAGCAGATG-GT-TTCTGGCGAGATCACTGCCCTCTCCGGTGGTTGGAAGATG 4264 Query 279726 AAGCTGGCCCTCACTCGCGCCATTCTACTGCGTGCCGATGTCCTACTGCTTGATGAGCCA 279785 ||||| || || || ||| | | | | ||||| | || ||||| || ||||| Sbjct 4265 AAGCTCGCTCTGTGCCGTGCCGTCTTCGAGGCTCCCGATATTCTGCTGCTAGACGAGCCT 4324 Query 279786 ACCAACCACATGGACACCACCAACGTAGCCTGGCTAGTGTCCTACCTAACC-AGTCTGAA 279844 |||||||| |||| | ||||| ||||| | | ||||| ||| | ||| Sbjct 4325 ACCAACCATCTGGATGTGAAGAACGTCAAGTGGCTCGAGGAGTACCTCACCAACTCT--- 4381 Query 279845 GAATGTTTCTTCCCTCATTGTCTCTCACGACTCTGGCTTCCTAGATGCCGTGTGCTCTGC 279904 | | ||| |||| ||||| ||||||||||||||||| || ||| ||| | || Sbjct 4382 -CCTTGCACCTCCATCATCGTCTCCCACGACTCTGGCTTCCTCGACAACGTCTGC-CAGC 4439 Query 279905 -CATCATTCACTATGAGC---AAAATCTGAAGCTCTCCAAGCACATCGGCAACCTGTCTG 279960 ||| | ||||| |||| || || |||| || |||| || |||||| ||| Sbjct 4440 ACATTGTCCACTACGAGCGCTTCAAGCTCAAGCGCTACAAG------GGTAACCTGGCTG 4493 Query 279961 CTTTCGTGGCAAAGCG--CCCTGAGGCGGCCGCCTACTATGACCTGAAGGACGCCACCG- 280017 ||||||| || ||| |||| | | | | ||||| || || | ||| ||| Sbjct 4494 CTTTCGT-CCAGCGCGTCCCCTCTGCCCG-ATCTTACTACGAGCT---CGGTGCCTCCGA 4548 Query 280018 --CCAAGTGGGAATTCCCTGAGCCAGGGTTTCTGGAGGGCATCACATCAAAGGATCGCGC 280075 | ||| ||||||||||| || || || ||||| ||| | |||| || Sbjct 4549 GATCGAGTTCTCCTTCCCTGAGCCCGGTTTCCTCGAGGGAGTCAAGACCAAGGCCAAGGC 4608 Query 280076 AATCATG-AAGCTCCGTGGCGTCTCCTTTGCTTATCCCAATGGCCCCAACATCTTCAG-- 280132 ||| || || | | | ||||| || ||| | | ||| | | |||| Sbjct 4609 CATCCTGCGTGCCACCAAG-ATGTCCTTCCAGTACCCCGGTACCTCCA--AGCCTCAGAT 4665 Query 280133 CAGTGTCAACTC---GCAGGTTTCTATGAACTCACGGATTGGTGTCATTGGACCCAATGG 280189 || | || ||| ||| || || ||| || |||| ||||| || ||||| || Sbjct 4666 CACCGACATCTCCTTCCAGTGCTCCCTGGGCTCCCGTATTGCCGTCATCGGTCCCAACGG 4725 Query 280190 TGCGGGTAAGTCTACCCTAATCAAAGTCCTGACTGGCGAGACCCAGGCCACTGAGGGGTC 280249 ||| || ||||| ||||| ||||| ||||| ||||| ||| | |||| ||||| Sbjct 4726 TGCCGGAAAGTCCACCCTCATCAACGTCCTCACTGGTGAGCTCATCCCCACCGAGGGTGA 4785 Query 280250 CGTTTGGAAGCATCCCAACATGCGGATGGCTTACGTCGCTCAGCACGCTTTCCACCACAT 280309 | | |||| ||||| || || || ||| || |||||||||||| ||||| Sbjct 4786 GATCTACCAGCACGAGAACATCCGTATCGCCTACATCAAGCAGCACGCTTTCGCTCACAT 4845 Query 280310 CGAGAACCACCTGGACATGACTCCTAACCAATACATTCAGTGGCGCTATGCA-AGTGGGC 280368 ||| ||||||||||||| ||| || | | ||||| |||||||| | | || | ||| Sbjct 4846 CGATAACCACCTGGACAAGACCCCCTCCGAGTACATCCAGTGGCGAT-TCCAGACTGGTG 4904 Query 280369 AGGATCTGGAGTCGGTGGATCG 280390 |||||| ||| | |||| || Sbjct 4905 AGGATCGTGAGACCATGGACCG 4926 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1027534185895339