Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Fusarium_20tucumaniae_20[genbank_20GCA_5F001680595.1_202016-07-06] 22,979 sequences; 49,676,379 total letters Query= NC_008724.1 Length=288047 Score E Sequences producing significant alignments: (Bits) Value seq3152 170 4e-37 seq3398 165 2e-35 seq2302 161 2e-34 seq1003 159 6e-34 seq8462 107 4e-18 >seq3152 Length=5241 Score = 170 bits (188), Expect = 4e-37 Identities = 174/227 (77%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 68235 CCTCCGCGAAGGCGCAATACCAAGTGTAGCGTGGACTCTTTTTGGATGTTATAATCGGAG 68294 || ||||| || || | |||| ||| || || ||||| || |||||||| || ||| | Sbjct 3986 CCACCGCGCAGACGAAGAACCAGGTGCAGAGTCGACTCCTTCTGGATGTTGTAGTCGCTG 4045 Query 68295 AGTGTCCTCCCATCTTCTAACTGCTTCCCGGCGAATATGAGTCTTTGTTGGTCGGGTGGA 68354 || || | || || || | |||||| ||||| || ||||||| ||||| || || ||| Sbjct 4046 AGAGTTCGGCCGTCCTCGAGCTGCTTGCCGGCAAAGATGAGTCGCTGTTGATCAGGAGGA 4105 Query 68355 ATGCCTTCCTTGTCTTGAATCTTTGCCTTGACGGCCTCGATGGTGTCTGCTGATTCTACT 68414 |||||||||||||| || ||||| | || || || |||||||| | ||||| || Sbjct 4106 ATGCCTTCCTTGTCCTGGATCTTCGATTTCACATTGTCAATGGTGTCGGACGATTCCACC 4165 Query 68415 TCCAAGGTGATGGTTTTTCCCGTGAGGGTCTTGACGAATATCTGCAT 68461 || | ||||||||| ||||| ||||||||||||||||| |||||||| Sbjct 4166 TCAAGGGTGATGGTCTTTCCGGTGAGGGTCTTGACGAAGATCTGCAT 4212 Score = 145 bits (160), Expect = 1e-29 Identities = 154/203 (76%), Gaps = 0/203 (0%) Strand=Plus/Plus Query 68235 CCTCCGCGAAGGCGCAATACCAAGTGTAGCGTGGACTCTTTTTGGATGTTATAATCGGAG 68294 || || |||||||| | || | ||| || || ||||| || |||||||| ||||||||| Sbjct 4489 CCACCACGAAGGCGGAGGACGAGGTGGAGGGTCGACTCCTTCTGGATGTTGTAATCGGAG 4548 Query 68295 AGTGTCCTCCCATCTTCTAACTGCTTCCCGGCGAATATGAGTCTTTGTTGGTCGGGTGGA 68354 || || | ||||| || | |||||| |||||||| || || | || |||||||| || Sbjct 4549 AGGGTGCGGCCATCCTCAAGCTGCTTGCCGGCGAAAATCAGACGCTGCTGGTCGGGGGGG 4608 Query 68355 ATGCCTTCCTTGTCTTGAATCTTTGCCTTGACGGCCTCGATGGTGTCTGCTGATTCTACT 68414 ||||| |||||||| |||||||| | |||||| |||||||| || | || || || Sbjct 4609 ATGCCCTCCTTGTCCTGAATCTTCGACTTGACATTGTCGATGGTATCCGAGGACTCGACC 4668 Query 68415 TCCAAGGTGATGGTTTTTCCCGT 68437 || | ||| ||||| || ||||| Sbjct 4669 TCGAGGGTAATGGTCTTGCCCGT 4691 Score = 143 bits (158), Expect = 5e-29 Identities = 162/217 (75%), Gaps = 0/217 (0%) Strand=Plus/Plus Query 68235 CCTCCGCGAAGGCGCAATACCAAGTGTAGCGTGGACTCTTTTTGGATGTTATAATCGGAG 68294 || || || ||||| | || | ||| || || ||||| || || ||||| || |||| | Sbjct 4214 CCACCACGGAGGCGGAGGACGAGGTGGAGTGTTGACTCCTTCTGAATGTTGTAGTCGGCG 4273 Query 68295 AGTGTCCTCCCATCTTCTAACTGCTTCCCGGCGAATATGAGTCTTTGTTGGTCGGGTGGA 68354 || || | ||||| || | |||||| |||||||| || || | || ||||| || ||| Sbjct 4274 AGGGTGCGGCCATCCTCAAGCTGCTTGCCGGCGAAAATCAGGCGCTGCTGGTCAGGAGGA 4333 Query 68355 ATGCCTTCCTTGTCTTGAATCTTTGCCTTGACGGCCTCGATGGTGTCTGCTGATTCTACT 68414 || || ||||| ||||| ||||| | ||||||| ||||| ||||| | || || || Sbjct 4334 ATACCCTCCTTATCTTGGATCTTCGACTTGACGTTGTCGATCGTGTCGGAAGACTCCACC 4393 Query 68415 TCCAAGGTGATGGTTTTTCCCGTGAGGGTCTTGACGA 68451 || | |||||| || || || |||||||||||||||| Sbjct 4394 TCGAGGGTGATAGTCTTACCAGTGAGGGTCTTGACGA 4430 >seq3398 Length=5185 Score = 165 bits (182), Expect = 2e-35 Identities = 562/865 (65%), Gaps = 23/865 (3%) Strand=Plus/Plus Query 9935 CATGACGCCCGCCTTCTGGTACTCCGATACCCGGCGCTCGAAGAAGTTGGACTTGCCCTC 9994 || ||| || ||||||||||| || || || |||||||||||||| |||||| | Sbjct 970 CAGGACACCAGCCTTCTGGTAGTCACCGACACGCTTCTCGAAGAAGTTGGTCTTGCCACC 1029 Query 9995 GAGGGAAATGAGCTCCATGAAGTCAAAGGGGTTCTCGGCGCCAAACTGCTTGGGGTAACC 10054 |||||| ||| |||||||||||| |||||||| ||| | ||| || || Sbjct 1030 GAGGGAGATGTTCTCCATGAAGTCGAAGGGGTTGGTGGCCTTGTAGACCTTCTCGTTGCC 1089 Query 10055 GAGTGCTGTGAAAATGCGGTCAGCCACGAACTCGATGTACTGGCTCATCAGGTCCGAGTT 10114 ||| || || | |||||| || ||||||||||||||||| |||| ||||| | ||| Sbjct 1090 GAGGGCGACGAGGAGGCGGTCGGCGACGAACTCGATGTACTGCTTCATGAGGTCGGCGTT 1149 Query 10115 CATGCCAATCATGCGGCAGGGGATGGCGTCGCAAATGAAGTCCTTTTCGTTGGCGACCGC 10174 |||||| | || | |||||||| ||| ||| | ||| |||| || ||| ||| || Sbjct 1150 CATGCCGAGCAGGGCGCAGGGGAGGGCCTCGGTCAGGAACTCCTGCTCAATGGTGACGGC 1209 Query 10175 TTCCTCGACGATGCTCT---TTACC-ACGTCAAGGGACAGCTTGTTCTCGAGCTTCGAAT 10230 || || |||| || | ||| | | || || || || ||| | || | Sbjct 1210 ATCGGTGATGATGTCCTGGATGACCTGCTTGCTGGCACGGC----CCTTGAGGTGGGAGT 1265 Query 10231 ACAGGAGCTCTCCAAACTGCTGGTGGAGGCCCTCGTCGCGGCTGATGAACTCGTTGGACA 10290 ||||| | |||| | ||| || |||||||| || ||||| ||||||||| | Sbjct 1266 GGAGGAGGCATGCAAAGTCGGTGTGAAGACCCTCGTCACGAGAGATGAGCTCGTTGGAAA 1325 Query 10291 AACCCAGACCGGGCATGAGCCCCCGGTTGCGCAGCCAGAAAATGGCGCAGAACGACCCGG 10350 | ||| || |||||||| || || || |||||||| |||| | || | ||| Sbjct 1326 AGGTCAGGCCAGGCATGAGGCCACGCTTCTTGAGCCAGAAGATGGAGGCAAAGGCACCGC 1385 Query 10351 AGAACAGAAGACCCTCCACGCACACCCAGGCGACGAGGCGCTCTGCGAAGGA-GCGGTC- 10408 ||| | | |||||| ||| | | |||||||| |||| || ||||| | | || Sbjct 1386 TGAAGAAGATACCCTCGACGGCAGCAAAAGCGACGAGACGCTGAGCAAAGGACGAGTTCT 1445 Query 10409 -GCGCGAAAAGTATTTCGAGGCCCACGCTGCCTTCTTTCCCACGGCAGGGATCGTCTCGA 10467 | | | || |||||| | |||||||| | | | ||||| ||||| | Sbjct 1446 TGTCCTGGATCCATCGGATGGCCCAGTCGGCCTTCTTGCGGATGCAGGGGATGGTCTCAA 1505 Query 10468 TAGCCTCGAAGAGCTTGTTACGCTCGGTCTCGTCCTCAATAAGAGCATCAAGGAGCAGGG 10527 | || | |||||| | | | || | | |||| || | |||| ||| || | Sbjct 1506 TGGCGTTGAAGAGGTAGGTTCGTTGAGCAGGCTCCTTGATGTAGGTGTCAATGAGGAGCG 1565 Query 10528 AGTATTGCTCGCTGTGGACGCTCTCATTGTACCCCTGGTAAGCGTAGAA-CATACGTGCC 10586 |||| |||| ||||| | |||| | |||| | ||||||| ||| || ||| Sbjct 1566 AGTAGGTCTCGGAGTGGATGTTCTCCATCATGATCTGGAAGCCGTAGAAGCAT-CGGGCC 1624 Query 10587 GAGGGGTCCGTGACTTCCTCGGCAAAGTTGTTGTTCAGGTTCTCCATCACCATGCCATC- 10645 |||| | ||| || || || | | |||||||| | || ||||| || Sbjct 1625 TCGGGGATCTGGACCTCGCCGCTGAATCGCTCGACAAGGTTCTCGTTGACGATGCCGTCA 1684 Query 10646 GCTGCCTGCAAAGAAGCCGAGGATGTGCTTGATGAAGTGGCGCTCATCATCGTTCA---- 10701 | || | || |||||| |||||||||| || |||| |||| || | ||| Sbjct 1685 GATG-CAGCGAAGAAGGCGAGGATGTGGGAGACGAAGAACTGCTCGTCGGCAGTCAGGCG 1743 Query 10702 GTTTTTCACGCCAGTCTACCACATCCTGGTTGAGCTGGACCTCCTCCACGGTCCAGAAAG 10761 ||| || |||||| | ||||| | | | | |||||| | |||||||||| Sbjct 1744 GTTGTT----CCAGTCGTGGAGATCCTTGGATAAATCAATCTCCTCGGCAGTCCAGAAAG 1799 Query 10762 TGGCAACGGCCTTCTTGTACATCTG 10786 ||| ||||||||||||||||||| Sbjct 1800 AGGCCTCGGCCTTCTTGTACATCTG 1824 >seq2302 Length=6171 Score = 161 bits (178), Expect = 2e-34 Identities = 172/227 (76%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 68235 CCTCCGCGAAGGCGCAATACCAAGTGTAGCGTGGACTCTTTTTGGATGTTATAATCGGAG 68294 || || || ||||| | |||| ||| || ||| ||| || |||||||| || ||| Sbjct 902 CCACCACGCAGGCGGAGGACCAGGTGGAGGGTGCTCTCCTTCTGGATGTTGTAGTCGCTC 843 Query 68295 AGTGTCCTCCCATCTTCTAACTGCTTCCCGGCGAATATGAGTCTTTGTTGGTCGGGTGGA 68354 || || | ||||| || | |||||| || || || ||||||| || |||||||| || Sbjct 842 AGGGTGCGGCCATCCTCGAGCTGCTTGCCAGCAAAGATGAGTCGCTGCTGGTCGGGGGGG 783 Query 68355 ATGCCTTCCTTGTCTTGAATCTTTGCCTTGACGGCCTCGATGGTGTCTGCTGATTCTACT 68414 ||||| |||||||| || ||||| | ||||||| ||||||||||| | || || || Sbjct 782 ATGCCCTCCTTGTCCTGGATCTTGGACTTGACGTTGTCGATGGTGTCGGAAGACTCCACC 723 Query 68415 TCCAAGGTGATGGTTTTTCCCGTGAGGGTCTTGACGAATATCTGCAT 68461 || | |||||| || || ||||||||||||||||| || |||||||| Sbjct 722 TCGAGGGTGATTGTCTTCCCCGTGAGGGTCTTGACAAAGATCTGCAT 676 >seq1003 Length=11632 Score = 159 bits (176), Expect = 6e-34 Identities = 669/1037 (65%), Gaps = 42/1037 (4%) Strand=Plus/Minus Query 224981 CGCCACTGGATGTACTGGTTGGGGGTCATGTCCAGGTGGTTCTCAATATGGTGGAAAGCA 225040 |||||||||||||||| | ||||||| ||||||||||||| || || || |||||| Sbjct 4890 CGCCACTGGATGTACTCGGAGGGGGTCTTGTCCAGGTGGTTATCGATGTGAGCGAAAGCG 4831 Query 225041 TGCTGGGCTACGTACGCCATGCGCATGTTGGGATGCTTCCACA-CAGAGCCCCGAGTCGG 225099 ||||| | ||| || || || ||||| |||| | | | | || || || Sbjct 4830 TGCTGCTTGATGTAGGCGATACGGATGTTCTCGTGCTGGTAGATCTCACCCTCGGTGGGG 4771 Query 225100 TTGTGCCTCGCCGGTGAGGACCTTGATGAGCGTAGTCTTGCCCGCACCATTGGGGCCAAT 225159 || | ||| || |||||||| |||||||| || | ||| || ||||| ||||| || || Sbjct 4770 ATGAG-CTCACCAGTGAGGACGTTGATGAGGGTGGACTTTCCGGCACCGTTGGGACCGAT 4712 Query 225160 CACGCCAATCCGGGATGACATTGCAACCTG---CGAGTTCACGTTG--CTGAAGATCTCA 225214 ||| |||| ||||| || | ||| ||| | || || |||| | | | Sbjct 4711 GACGGCAATACGGGAGCCCAGGGAGCACTGGAAGGAGATGTCGGTGATCTGAGGCTTGGA 4652 Query 225215 GGGCCAGTTTGGTAAGCAAAGGCCA------CGCCACGCAGCTTCATGATGGCACGGTCC 225268 || | | |||| |||| || | ||||||| |||||| | || Sbjct 4651 GGTACCG--GGGTACTGGAAGGACATCTTGGTGGCACGCAG------GATGGCCTTGGCC 4600 Query 225269 TTGGAAGTAATACCCTCCAGGAACCCGGGCTCGGGGAACTCCCACTTGGTCACCGCGTCC 225328 |||| | | ||||| ||||| |||||||| ||||| ||| | || | | | | Sbjct 4599 TTGGTCTTGACTCCCTCGAGGAAACCGGGCTCAGGGAAGGAGAACTCGATCTCGGAGGCA 4540 Query 225329 TTCAGGTCGTAGTAAGAT---GCAGCCTCGGGTCGCTTTGCCACGAAAGCAGACAGGTTT 225385 || |||||||||||| |||| ||| ||| || |||||||||| |||||| Sbjct 4539 CCGAGCTCGTAGTAAGATCGGGCAG--AGGGGACGCGCTG-GACGAAAGCAGCCAGGTTA 4483 Query 225386 CCGAGGTGCTTCGTGAGCTTGAGGTTCTTCTCGTAATGAACAAT-TGCCGAGCACACTGC 225444 || || | ||||||||| | |||||| || ||||| ||| | ||| || Sbjct 4482 CCCTTGTAGCGCTTGAGCTTGAAG---CGCTCGTAGTGGACAATGTGCTG-GCAGACGTT 4427 Query 225445 GTCAAGGAAGCCAGAGTCGTGGGACACAATGATGGACG-ACACGTTCGTCAGGCCCTTGA 225503 ||| |||||||||||||||||||| || |||||||| | || | | | | ||| Sbjct 4426 GTCGAGGAAGCCAGAGTCGTGGGAGACGATGATGGAGGTGCAAG---GAGA-GTTGGTGA 4371 Query 225504 GGTGCGTGATGAGCCATGCCACGTTGCTGACGTCCATGTGGTTTGTAGGTTCGTCCAGAA 225563 ||| | |||||| ||||| | || |||| ||||| ||||| ||||| || | Sbjct 4370 GGTACTCCTCGAGCCACTTGACGTTCTTCACATCCAGATGGTTGGTAGGCTCGTCTAGCA 4311 Query 225564 GCAGGATGTCAGCATCAATGAGGATGGCGCGCGTGAGAGACAGCTTCATTTTCCAGCCCC 225623 |||| || || | | | || || ||| || |||| |||||||| ||||| || | Sbjct 4310 GCAGAATATCGGGAGCCTCGAAGACGGCACGGCACAGAGCGAGCTTCATCTTCCAACCAC 4251 Query 225624 CGGACAGGGAGCCGATTGAAACAGAGTGCTTAGCTTCGTCAAAGCCGTACTCCAGGAGCG 225683 |||| |||| ||| |||| | | ||| |||||| | || |||| Sbjct 4250 CGGAGAGGGCAGTGATCTCGCCAGAAACCATCTGCTCGGTGAAGCCGAAGTCGTTGAGCT 4191 Query 225684 TCTGGA--TAATGCGCTCGGGAG-AGCTGCGAGCGGCAACGTTGGGGTCGGACGAGAGGT 225740 || || || | | ||||| | || | |||| || | | | | | Sbjct 4190 GCTTGACGACATCCTCCTGGGAGTTGGTGACACCGGCCTCGGCGAGCTTCTTCATGGTCC 4131 Query 225741 AATCATATACGGTCATGTCCGAGACAGACGCGTCAATGTCGTGGTCCACGTACACCGTCC 225800 | ||| |||||| || | | ||| | ||| | |||||| || ||| | || ||| Sbjct 4130 AGTCAATGGTGGTCATCTCAGTGTCAGCAGAGTCCAGGTCGTGCTCGACGAAGACGGTCT 4071 Query 225801 GGAGCT-GAGAAGCATCGGGGAAGCCCTCCAGCTGGCCATTTGCAATCGCACGGAGCAGG 225859 || || | || | |||||| ||||| | ||| | || || ||||| | || Sbjct 4070 TGACCTCGCTCTGC-TTGGGGAAACCCTCAACCTGCTCGTTGTTGATGGCACGCATGAGA 4012 Query 225860 GTACTCTTGCCCGCGCCGTTGGGACCGATGAGGCCGTAATGATTCCCGCGCTTGATGTTG 225919 || |||||| | |||||||||||| || ||||| | | || ||||||| | | Sbjct 4011 GTGGACTTGCCGGAACCGTTGGGACCGCAAAGACCGTAGCGCTGGCCACGCTTGAGGCGG 3952 Query 225920 AGGCGCGTGGAGTTCAGGAGGATCTTGCCACCATAGGCAAGGGAGAACTCGCAATCGCAC 225979 ||| | || ||| || || |||||| |||| |||||||| ||||| || | ||| Sbjct 3951 AGGTGAGTCTGGTTGAGCAGAATCTTGGCACCGTAGGCAAGAGAGAAAGTACAGTTGCAA 3892 Query 225980 AGGTCCTCACCCTCCTC 225996 || |||||||||||||| Sbjct 3891 AGATCCTCACCCTCCTC 3875 >seq8462 Length=2633 Score = 107 bits (118), Expect = 4e-18 Identities = 431/670 (64%), Gaps = 19/670 (3%) Strand=Plus/Minus Query 224978 TACCGCCACTGGATGTACTGGTTGGGGGTCATGTCCAGGTGGTTCTCAATATGGTGGAAA 225037 || |||||||| | |||||||||||||||| | || || || |||| | || | | | Sbjct 1939 TAACGCCACTGAAGGTACTGGTTGGGGGTCTTCTCGAGATGCATCTCGACGTGCTCCAGA 1880 Query 225038 GCATGCTGGGCTACGTACGCCATGCGCATGTTGGGATGCTTCCACACAGAGCCCCGAGTC 225097 || ||||| | ||| | || |||| |||||| |||||| || || ||| Sbjct 1879 GCGTGCTGCTTGATGTAGCCGATACGCAAGTTGGGGTGCTTCTCGACCTTTCCGGTAGTA 1820 Query 225098 GGTTGTGCCTCGCCGGTGAGGACCTTGATGAGCGTAGTCTTGCCCGCACCATTGGGGCCA 225157 || | |||||||||||| | |||||| || |||| |||||| || || ||||||||| Sbjct 1819 GGAATGGTCTCGCCGGTGAGCAACTTGATCAGGGTAGACTTGCCAGCTCCGTTGGGGCCA 1760 Query 225158 ATCACGCCAATCCGGGATGACATTGCAACCTGCGAGTTCACGT--TGCTGA-AGATCTCA 225214 || | | ||| ||||| |||| || | ||| | || | ||| || | || Sbjct 1759 ATGATGGCAACACGGGACGACAGTGTCAGCTGGCAAGAGACCTCATGCAGAGAAGGCTTG 1700 Query 225215 GGGCCAGTTTGGTAAGCAAAGGCCAC----GCCACGCAGCTTCATGATGGCACGGTCCTT 225270 || | | |||| | | | ||| | || || | |||||||||||| | | Sbjct 1699 GGAGCCTTGGGGTACGTGTAAGACACGTTGGACATGCGG----ATGATGGCACGGGTCAT 1644 Query 225271 GGAAGTAATACCCTCCAGGAACCCGGGCTCGGGGAACTCCCACTTGGTCACCGCGTCCTT 225330 ||| | | || ||||| ||||| ||||||| ||| | | | || Sbjct 1643 GGACTTGACGCCAGTCAGGATACCGGGGGGAGGGAACTTGAACTGGACGTTGGAGGCCGA 1584 Query 225331 CAGGTCGTAGTAAGATGCAGCCTCGGGTCGCTTTGCCACGAAAGCAGACAGGTTTCCGAG 225390 ||| |||||| |||||||| || | | || || || | |||||| || Sbjct 1583 CAGAGTGTAGTAGCTCTTGGCCTCGGGGCGGATCTCGACAAAGGCGGCCAGGTTGCCCTT 1524 Query 225391 GTGCTTCGTGAGCTTGAGGTTCTTCTCGTAATGAACAATTGCCGAGCACACTGCGTCAAG 225450 || | ||||| ||| |||||| || || | | | || ||| || Sbjct 1523 GTAGCAAGCCAGCTTCTTGTTGGGCTCGTAGTGGTAGATGTCGGTGGTGACGTTGTCGAG 1464 Query 225451 GAAGCCAGAGTCGTGGGACACAAT--GATGGACGACACGTTCGTCA-GGCCCTTGAGGTG 225507 ||||||||||||||| || ||||| || | || | ||| | | |||||||| Sbjct 1463 GAAGCCAGAGTCGTGAGAAACAATCAGACTGGTGATA---TCGGGATGAGTCTTGAGGTA 1407 Query 225508 CGTGATGAGCCATGCCACGTTGCTGACGTCCATGTGGTTTGTAGGTTCGTCCAGAAGCAG 225567 | |||||| || | |||| || || | ||||| |||||||||||||| || || Sbjct 1406 GTTCTCGAGCCACGCAATGTTGGCAACATCAAGATGGTTGGTAGGTTCGTCCAGGAGAAG 1347 Query 225568 GATGTCAGCATCAATG-AGGATGGCGCGCGTGAGAGACAGCTTCATTTTCCAGCCCCCGG 225626 || |||||| | || || ||||| || | |||| ||||||||| ||||| || || | Sbjct 1346 GACATCAGCA-CGCTGAAGCATGGCTCGGGCTAGAGCCAGCTTCATCTTCCAACCACCAG 1288 Query 225627 ACAGGGAGCC 225636 ||| |||||| Sbjct 1287 ACAAGGAGCC 1278 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 921357675485880