Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Fusarium_20tucumaniae_20[genbank_20GCA_5F001680595.1_202016-07-06] 22,979 sequences; 49,676,379 total letters Query= NC_011616.1 Length=148634 Score E Sequences producing significant alignments: (Bits) Value seq2302 120 3e-22 seq3152 100 3e-16 seq1887 100 3e-16 >seq2302 Length=6171 Score = 120 bits (132), Expect = 3e-22 Identities = 144/193 (75%), Gaps = 2/193 (1%) Strand=Plus/Minus Query 126922 CTCTTTTTGAATATTGTAATCGCCCATCGTGCGAGAATCGTCTAGCTGTTTTCCAGCGTA 126981 ||| || || || ||||| |||| || ||||| ||| || ||||| || ||||| | Sbjct 867 CTCCTTCTGGATGTTGTAGTCGCTCAGGGTGCGGCCATCCTCGAGCTGCTTGCCAGCAAA 808 Query 126982 GATCAATCGCTGCTGATCGGGAGGTATGCCCTCCTTGTCCGTGATTTTCTGCTTGA-GTT 127040 ||| | ||||||||| ||||| || ||||||||||||||| ||| || ||||| ||| Sbjct 807 GATGAGTCGCTGCTGGTCGGGGGGGATGCCCTCCTTGTCCTGGATCTTGGACTTGACGTT 748 Query 127041 GTTCGACGGTGTCCGTACTCTCGACTTCGACGGTCACCGTTTTGCCGGTCAGAGTTTTTA 127100 | |||| |||||| | | ||| || |||| ||| | || || || || || || || | Sbjct 747 G-TCGATGGTGTCGGAAGACTCCACCTCGAGGGTGATTGTCTTCCCCGTGAGGGTCTTGA 689 Query 127101 CAAAAATCTGCAT 127113 |||| |||||||| Sbjct 688 CAAAGATCTGCAT 676 >seq3152 Length=5241 Score = 100 bits (110), Expect = 3e-16 Identities = 127/175 (73%), Gaps = 0/175 (0%) Strand=Plus/Plus Query 126917 GTAGACTCTTTTTGAATATTGTAATCGCCCATCGTGCGAGAATCGTCTAGCTGTTTTCCA 126976 || ||||| || || || ||||||||| | ||||| ||| || ||||| || || Sbjct 4519 GTCGACTCCTTCTGGATGTTGTAATCGGAGAGGGTGCGGCCATCCTCAAGCTGCTTGCCG 4578 Query 126977 GCGTAGATCAATCGCTGCTGATCGGGAGGTATGCCCTCCTTGTCCGTGATTTTCTGCTTG 127036 ||| | |||| |||||||| ||||| || ||||||||||||||| || ||| |||| Sbjct 4579 GCGAAAATCAGACGCTGCTGGTCGGGGGGGATGCCCTCCTTGTCCTGAATCTTCGACTTG 4638 Query 127037 AGTTGTTCGACGGTGTCCGTACTCTCGACTTCGACGGTCACCGTTTTGCCGGTCA 127091 | | |||| ||| |||| |||||| |||| ||| | || ||||| |||| Sbjct 4639 ACATTGTCGATGGTATCCGAGGACTCGACCTCGAGGGTAATGGTCTTGCCCGTCA 4693 Score = 84.2 bits (92), Expect = 2e-11 Identities = 139/198 (70%), Gaps = 2/198 (1%) Strand=Plus/Plus Query 126917 GTAGACTCTTTTTGAATATTGTAATCGCCCATCGTGCGAGAATCGTCTAGCTGTTTTCCA 126976 || ||||| || || || ||||| ||| || || ||| || || ||||| || ||| Sbjct 3788 GTCGACTCCTTCTGGATGTTGTAGTCGGACAGGGTACGACCGTCTTCCAGCTGCTTACCA 3847 Query 126977 GCGTAGATCAATCGCTGCTGATCGGGAGGTATGCCCTCCTTGTCCGTGATTTTCTGCTTG 127036 || |||| | ||||||||| || || || ||||||||||||||| || || ||| Sbjct 3848 GCAAAGATAAGTCGCTGCTGGTCAGGGGGGATGCCCTCCTTGTCCTGAATCTTGGACTTC 3907 Query 127037 A-GTTGTTCGACGGTGTCCGTACTCTCGACTTCGACGGTCACCGTTTTGCCGGTCAGAGT 127095 | |||| || | ||| || | ||| || || | || | || || || || ||||| Sbjct 3908 ACGTTG-TCAATGGTATCGCTCGACTCCACCTCCAGAGTGATGGTCTTTCCAGTGAGAGT 3966 Query 127096 TTTTACAAAAATCTGCAT 127113 || ||||| |||||||| Sbjct 3967 CTTGACAAAGATCTGCAT 3984 >seq1887 Length=5954 Score = 100 bits (110), Expect = 3e-16 Identities = 111/148 (75%), Gaps = 0/148 (0%) Strand=Plus/Minus Query 126958 ATCGTCTAGCTGTTTTCCAGCGTAGATCAATCGCTGCTGATCGGGAGGTATGCCCTCCTT 127017 ||| || ||||| || |||||| |||||| ||||||||| || || || ||||||||||| Sbjct 4607 ATCCTCCAGCTGCTTGCCAGCGAAGATCAGTCGCTGCTGGTCCGGGGGGATGCCCTCCTT 4548 Query 127018 GTCCGTGATTTTCTGCTTGAGTTGTTCGACGGTGTCCGTACTCTCGACTTCGACGGTCAC 127077 |||| ||| || ||||| | || | |||||||| |||||| |||| ||| | Sbjct 4547 GTCCTGGATCTTGGACTTGACATTGTCAATGGTGTCCGAGGACTCGACCTCGAGGGTGAT 4488 Query 127078 CGTTTTGCCGGTCAGAGTTTTTACAAAA 127105 || ||||| ||||| || || || ||| Sbjct 4487 GGTCTTGCCCGTCAGGGTCTTCACGAAA 4460 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 475364218338960