Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Fusarium_20tucumaniae_20[genbank_20GCA_5F001680595.1_202016-07-06] 22,979 sequences; 49,676,379 total letters Query= NC_013772.1 Length=176677 Score E Sequences producing significant alignments: (Bits) Value seq2302 138 1e-27 seq3152 125 8e-24 seq1887 111 2e-19 >seq2302 Length=6171 Score = 138 bits (152), Expect = 1e-27 Identities = 161/215 (75%), Gaps = 2/215 (1%) Strand=Plus/Minus Query 46385 ACCAGATGCAATGTACTCTCCTTTTGGATATTGTAGTCGGATAGAGTGCGCTCGTCGTCG 46444 ||||| || | || |||||||| ||||| ||||||||| || ||||| | || ||| Sbjct 884 ACCAGGTGGAGGGTGCTCTCCTTCTGGATGTTGTAGTCGCTCAGGGTGCGGCCATCCTCG 825 Query 46445 AGCTGCTTGCCGGCGAATATCAAGCGCTGCTGGTCGGCCGGCACGCTCTCCTTGTCCATG 46504 ||||||||||| || || || | ||||||||||||| || | || |||||||||| | Sbjct 824 AGCTGCTTGCCAGCAAAGATGAGTCGCTGCTGGTCGGGGGGGATGCCCTCCTTGTCCTGG 765 Query 46505 ATCTTCTTCTTGAGCGTCG-CCACCGTGTCGCTCGATTCCACATCCACCGTGATGGTTTT 46563 ||||| ||||| ||| | | | |||||| || ||||| || | ||||| || || Sbjct 764 ATCTTGGACTTGA-CGTTGTCGATGGTGTCGGAAGACTCCACCTCGAGGGTGATTGTCTT 706 Query 46564 GCCCGTCAGCGTTTTAACAAAGATTTGCATTTTGC 46598 ||||| || || || |||||||| ||||| |||| Sbjct 705 CCCCGTGAGGGTCTTGACAAAGATCTGCATCTTGC 671 >seq3152 Length=5241 Score = 125 bits (138), Expect = 8e-24 Identities = 145/193 (75%), Gaps = 2/193 (1%) Strand=Plus/Plus Query 46402 CTCCTTTTGGATATTGTAGTCGGATAGAGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAA 46461 |||||| ||||| ||||||||||| || || || |||| || |||||||| || || || Sbjct 3793 CTCCTTCTGGATGTTGTAGTCGGACAGGGTACGACCGTCTTCCAGCTGCTTACCAGCAAA 3852 Query 46462 TATCAAGCGCTGCTGGTCGGCCGGCACGCTCTCCTTGTCCATGATCTTCTTCTTGAGCGT 46521 || | ||||||||||| | || | || |||||||||| ||||| ||| | ||| Sbjct 3853 GATAAGTCGCTGCTGGTCAGGGGGGATGCCCTCCTTGTCCTGAATCTTGGACTTCA-CGT 3911 Query 46522 CG-CCACCGTGTCGCTCGATTCCACATCCACCGTGATGGTTTTGCCCGTCAGCGTTTTAA 46580 | | | || |||||||| ||||| |||| |||||||| || || || || || || | Sbjct 3912 TGTCAATGGTATCGCTCGACTCCACCTCCAGAGTGATGGTCTTTCCAGTGAGAGTCTTGA 3971 Query 46581 CAAAGATTTGCAT 46593 ||||||| ||||| Sbjct 3972 CAAAGATCTGCAT 3984 Score = 116 bits (128), Expect = 4e-21 Identities = 151/209 (72%), Gaps = 0/209 (0%) Strand=Plus/Plus Query 46385 ACCAGATGCAATGTACTCTCCTTTTGGATATTGTAGTCGGATAGAGTGCGCTCGTCGTCG 46444 ||||| |||| || |||||| ||||| ||||||||| ||||| || |||| ||| Sbjct 4004 ACCAGGTGCAGAGTCGACTCCTTCTGGATGTTGTAGTCGCTGAGAGTTCGGCCGTCCTCG 4063 Query 46445 AGCTGCTTGCCGGCGAATATCAAGCGCTGCTGGTCGGCCGGCACGCTCTCCTTGTCCATG 46504 |||||||||||||| || || | ||||| || || | || | || ||||||||| | Sbjct 4064 AGCTGCTTGCCGGCAAAGATGAGTCGCTGTTGATCAGGAGGAATGCCTTCCTTGTCCTGG 4123 Query 46505 ATCTTCTTCTTGAGCGTCGCCACCGTGTCGCTCGATTCCACATCCACCGTGATGGTTTTG 46564 |||||| || | | | | |||||| ||||||||| || | |||||||| || Sbjct 4124 ATCTTCGATTTCACATTGTCAATGGTGTCGGACGATTCCACCTCAAGGGTGATGGTCTTT 4183 Query 46565 CCCGTCAGCGTTTTAACAAAGATTTGCAT 46593 || || || || || || ||||| ||||| Sbjct 4184 CCGGTGAGGGTCTTGACGAAGATCTGCAT 4212 Score = 109 bits (120), Expect = 6e-19 Identities = 126/170 (74%), Gaps = 0/170 (0%) Strand=Plus/Plus Query 46402 CTCCTTTTGGATATTGTAGTCGGATAGAGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAA 46461 |||||| ||||| ||||| ||||| || ||||| | || || ||||||||||||||||| Sbjct 4524 CTCCTTCTGGATGTTGTAATCGGAGAGGGTGCGGCCATCCTCAAGCTGCTTGCCGGCGAA 4583 Query 46462 TATCAAGCGCTGCTGGTCGGCCGGCACGCTCTCCTTGTCCATGATCTTCTTCTTGAGCGT 46521 |||| ||||||||||||| || | || |||||||||| |||||| ||||| | Sbjct 4584 AATCAGACGCTGCTGGTCGGGGGGGATGCCCTCCTTGTCCTGAATCTTCGACTTGACATT 4643 Query 46522 CGCCACCGTGTCGCTCGATTCCACATCCACCGTGATGGTTTTGCCCGTCA 46571 | | || || || || || || | || ||||| |||||||||| Sbjct 4644 GTCGATGGTATCCGAGGACTCGACCTCGAGGGTAATGGTCTTGCCCGTCA 4693 Score = 107 bits (118), Expect = 2e-18 Identities = 134/181 (74%), Gaps = 2/181 (1%) Strand=Plus/Plus Query 46402 CTCCTTTTGGATATTGTAGTCGGATAGAGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAA 46461 |||||| || || |||||||||| || ||||| | || || ||||||||||||||||| Sbjct 4249 CTCCTTCTGAATGTTGTAGTCGGCGAGGGTGCGGCCATCCTCAAGCTGCTTGCCGGCGAA 4308 Query 46462 TATCAAGCGCTGCTGGTCGGCCGGCACGCTCTCCTTGTCCATGATCTTCTTCTTGAGCGT 46521 |||| |||||||||||| | || | | |||||| || ||||||| ||||| ||| Sbjct 4309 AATCAGGCGCTGCTGGTCAGGAGGAATACCCTCCTTATCTTGGATCTTCGACTTGA-CGT 4367 Query 46522 CG-CCACCGTGTCGCTCGATTCCACATCCACCGTGATGGTTTTGCCCGTCAGCGTTTTAA 46580 | | | ||||||| || ||||| || | ||||| || || || || || || || | Sbjct 4368 TGTCGATCGTGTCGGAAGACTCCACCTCGAGGGTGATAGTCTTACCAGTGAGGGTCTTGA 4427 Query 46581 C 46581 | Sbjct 4428 C 4428 >seq1887 Length=5954 Score = 111 bits (122), Expect = 2e-19 Identities = 133/181 (73%), Gaps = 0/181 (0%) Strand=Plus/Minus Query 46404 CCTTTTGGATATTGTAGTCGGATAGAGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAATA 46463 |||| ||||| ||||||||||| || || || | || || ||||||||||| ||||| | Sbjct 4641 CCTTCTGGATGTTGTAGTCGGAAAGGGTTCGGCCATCCTCCAGCTGCTTGCCAGCGAAGA 4582 Query 46464 TCAAGCGCTGCTGGTCGGCCGGCACGCTCTCCTTGTCCATGATCTTCTTCTTGAGCGTCG 46523 ||| ||||||||||| | || | || |||||||||| |||||| ||||| | Sbjct 4581 TCAGTCGCTGCTGGTCCGGGGGGATGCCCTCCTTGTCCTGGATCTTGGACTTGACATTGT 4522 Query 46524 CCACCGTGTCGCTCGATTCCACATCCACCGTGATGGTTTTGCCCGTCAGCGTTTTAACAA 46583 | | ||||| || || || || | |||||||| ||||||||||| || || || | Sbjct 4521 CAATGGTGTCCGAGGACTCGACCTCGAGGGTGATGGTCTTGCCCGTCAGGGTCTTCACGA 4462 Query 46584 A 46584 | Sbjct 4461 A 4461 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 565076042335080