Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Fusarium_20tucumaniae_20[genbank_20GCA_5F001680595.1_202016-07-06] 22,979 sequences; 49,676,379 total letters Query= NC_014767.1 Length=184095 Score E Sequences producing significant alignments: (Bits) Value seq11761 120 4e-22 seq3398 109 6e-19 seq11063 91.5 2e-13 seq10964 86.0 7e-12 >seq11761 Length=1535 Score = 120 bits (132), Expect = 4e-22 Identities = 281/414 (68%), Gaps = 20/414 (5%) Strand=Plus/Minus Query 11503 CGATCGAAACGACCTGGGCGGAGTAGAGCATCATCAAGAATATCGACACGGTTTGTAGCG 11562 ||||| || || || || || | | || | || || ||||| | ||||| ||| || Sbjct 407 CGATCAAATCGTCCAGGTCGCATCAAGGCCTTGTCGAGCATATCCGCTCGGTTGGTACCG 348 Query 11563 GCAATGACTACAATGCCAG-TCTCAT-TGTCGAAACCGTCCATTTCTGTGAGAAGCTGGT 11620 || | ||| |||| || | || | ||| |||||||||||| || || |||| ||||| Sbjct 347 GCCAGGACGACAA--CCTGCTCCCGGGTGTTGAAACCGTCCATCTCGGTCAGAATCTGGT 290 Query 11621 TGATCGTCTGTTCACGCTCATCGTTGGAGGGCATACCACCTGCCGAACGCTTCTTAC--- 11677 | | ||| || ||||| |||||| | ||| || ||| || || || | Sbjct 289 TCAGAGTCGCCTCCCGCTCGTCGTTGCCACCGAAACC-CCGGCC--ACTCTCCTGTCGCG 233 Query 11678 --CGACA----GCGTCAATCTCATCGATGAATACGATACACGGTTGGTTGGCACGTGCCT 11731 |||| ||||| ||||||||||| || | ||| || || ||| ||| | | Sbjct 232 CTCGACCAATGGCGTCGATCTCATCGATAAAGATGATGCAAGGAGCGTTCTTACGGCCTT 173 Query 11732 GTTCGAAAAGTTCACGTACACGCTTCGCTCCAACACCTACGAACATCTCAACGAAGTTTG 11791 |||| || || || ||||| | |||||||| || |||||||| ||||| | | Sbjct 172 CGGCGAACAGGTCTCGCACACGGGAAGGACCAACACCAACAAACATCTCGACGAATTCAG 113 Query 11792 --CGGCAGAACACTGAATGAAGGGAACATTAGACTCACCAGCGATGGCTCGAGCGAGGAG 11849 | || | ||||||| |||||| || |||||| ||||| | || ||||| | Sbjct 112 AACCGCTCA-CACTGAA-GAAGGGGACTCCAGACTCGCCAGCTGTAGCCTTGGCGAGCAA 55 Query 11850 AGTCTTACCCGTACCAGGTGCACCAGCGAGAAGGGCGCCACGGGGGATCTTGGC 11903 ||||||||||||||||| | ||||| |||| ||| || ||||||||| |||| Sbjct 54 TGTCTTACCCGTACCAGGGGGGCCAGCCAGAATGGCTCCTCGGGGGATCCTGGC 1 >seq3398 Length=5185 Score = 109 bits (120), Expect = 6e-19 Identities = 201/289 (70%), Gaps = 7/289 (2%) Strand=Plus/Plus Query 119508 TGAAGCCCTTCATCCCGAGAGATGAGCTCATTACTGAAGCAAAGTCCAGGCATGAGTCCT 119567 ||||| || || || |||||||||||||| || ||| || ||||||||||| || Sbjct 1289 TGAAGACCCTCGTCACGAGAGATGAGCTCGTTGGAAAAGGTCAGGCCAGGCATGAGGCCA 1348 Query 119568 CTTTTCTTTAGCCAAAAGATGGCACAAAAACTTCCAGAAAAGAAGATGCCCTCCACACAG 119627 | ||||| ||||| ||||||| ||| || |||||||| ||||| || Sbjct 1349 CGCTTCTTGAGCCAGAAGATGGAGGCAAAGGCACCGCTGAAGAAGATACCCTCGACGGCA 1408 Query 119628 GCGAAAGCGAATAGACGCTCAGCAAAAGGTCGAG-ACTTGTC---GAACCACTTGAGAGC 119683 || ||||||| ||||||| ||| ||||| |||| |||||| || ||| || || Sbjct 1409 GCAAAAGCGACGAGACGCTGAGC-AAAGGACGAGTTCTTGTCCTGGATCCATCGGATGGC 1467 Query 119684 CCAGTTGGCCTTACGCTCTATGCAGGGGACAGTTTGGATGGCTTCGAA-AAGTTGCTTCT 119742 ||||| |||||| |||||||||| || | ||||| | ||| | || | ||| Sbjct 1468 CCAGTCGGCCTTCTTGCGGATGCAGGGGATGGTCTCAATGGCGTTGAAGAGGTAGGTTC- 1526 Query 119743 TTTCAGCACCATCCTTAATATATTTATCAATGAGTTTAGAGTAGGTCTC 119791 || |||| ||||| || || | |||||||| ||||||||||| Sbjct 1527 GTTGAGCAGGCTCCTTGATGTAGGTGTCAATGAGGAGCGAGTAGGTCTC 1575 >seq11063 Length=1423 Score = 91.5 bits (100), Expect = 2e-13 Identities = 117/157 (75%), Gaps = 7/157 (4%) Strand=Plus/Plus Query 11799 ACACTGAATGAAGGGAACATTAGACTCACCAGCGATGGCTCGAGCGAGGAGAGTCTTACC 11858 |||| ||| |||||| || |||||| ||||| | || ||||| | |||||||| Sbjct 12 ACACGGAA-GAAGGGGACTCCAGACTCGCCAGCTGTAGCCTTGGCGAGCAATGTCTTACC 70 Query 11859 CGTACCAGGTGCACCAGCGAGAAGGGCGCCACGGGGGATCTTGGCACC--ACTTC-CAAA 11915 ||||||||| | ||||| |||| ||| || ||||| ||||||||||| |||| |||| Sbjct 71 CGTACCAGGGGGGCCAGCCAGAATGGCTCCTCGGGGAATCTTGGCACCGAGCTTCTCAAA 130 Query 11916 GTAGCGCTCAGGCTTCTTGAGGAAGTCCACAATCTCC 11952 | ||| |||| ||| |||||| ||||| |||| Sbjct 131 CT---TCTCGGGCTGCTTCAGGAAGCTCACAAACTCC 164 >seq10964 Length=1660 Score = 86.0 bits (94), Expect = 7e-12 Identities = 213/321 (66%), Gaps = 2/321 (1%) Strand=Plus/Minus Query 11683 GCGTCAATCTCATCGATGAATACGATACACGGTTGGTTGGCACGTGCCTGT-TCGAAAAG 11741 ||||||| ||||||||| || || || || |||| || || | | | ||| || Sbjct 1329 GCGTCAAGCTCATCGATAAAGACAATTGCAGGAGACTTGG-ACTTGGCAGCGTTGAAGAG 1271 Query 11742 TTCACGTACACGCTTCGCTCCAACACCTACGAACATCTCAACGAAGTTTGCGGCAGAACA 11801 || || || ||||| ||||| ||||| || || ||||| | || | |||| Sbjct 1270 CTCGCGAACTCGCTTGGCTCCGACACCCACAAAGATCTCGTCAAACTCGCTACCAGACAT 1211 Query 11802 CTGAATGAAGGGAACATTAGACTCACCAGCGATGGCTCGAGCGAGGAGAGTCTTACCCGT 11861 | | ||||||||| | ||| ||||| | |||||| || || |||||||| || || Sbjct 1210 GTAGAAGAAGGGAACTCCGGCCTCGCCAGCAACGGCTCGGGCAAGAAGAGTCTTTCCGGT 1151 Query 11862 ACCAGGTGCACCAGCGAGAAGGGCGCCACGGGGGATCTTGGCACCACTTCCAAAGTAGCG 11921 ||| || | ||| | || || | || ||| | |||||||||| | | | Sbjct 1150 ACCGGGAGGGCCAACCAGGAGAACACCCTTGGGCAGCTTGGCACCAAGGTCGCTGAACTT 1091 Query 11922 CTCAGGCTTCTTGAGGAAGTCCACAATCTCCTCAAGTTCCTCCTTGGCGGAGTCGATACC 11981 || || |||||||| || || || | ||||| || ||||||||||| |||| || Sbjct 1090 TTCGGGGTTCTTGAGAAACTCGACCACCTCCTGGAGCTCCTCCTTGGCCTCGTCGCAGCC 1031 Query 11982 CTCAACATCGGTGAAACGAGT 12002 | |||||| |||| || || Sbjct 1030 GTGGACATCGCTGAATCGTGT 1010 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 588806824006200