Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Fusarium_20tucumaniae_20[genbank_20GCA_5F001680595.1_202016-07-06] 22,979 sequences; 49,676,379 total letters Query= NC_019495.1 Length=290304 Score E Sequences producing significant alignments: (Bits) Value seq8513 275 1e-68 seq3398 190 4e-43 >seq8513 Length=2088 Score = 275 bits (304), Expect = 1e-68 Identities = 960/1465 (66%), Gaps = 59/1465 (4%) Strand=Plus/Plus Query 221417 GTCAGGGCAGCGTGGTAGATGGTCTCAAAGATCATCTTGTTGAGTCTCTTG-GCCTCGGG 221475 || |||||||| |||||||||||||| |||||| ||||||||| ||| | |||||||| Sbjct 617 GTGAGGGCAGCATGGTAGATGGTCTCGAAGATCTGCTTGTTGAG-CTCACGAGCCTCGGG 675 Query 221476 AGAAGTGAAGGGCATACGCAGCATCT--GAAAGACGTCGGCCAGTCCCTGTACTCCGATA 221533 ||| ||| ||||| ||||| | | ||||| | || || || ||||| || || | | Sbjct 676 AGACTCGAAAGGCATGCGCAG-AGCAAGGAAAG-CATCAGCAAGACCCTGGACACCAACA 733 Query 221534 CCGATGGGCCTGTGTCTCCTGTTG--GAAGCGGCCGCTTCTGGCACGGGATAAAAGTTGA 221591 || ||||| | ||||| | ||||| | ||| ||||| | || || || ||| | Sbjct 734 CCAATGGGTCGGTGTCGCATGTTGCTGTTGCGA--GCTTCCGTAACAGGGTAGTGGTTCA 791 Query 221592 CGTCGATCAGATTGTTGAGGTTCAGAGTGATGACTTTAACCACCTCGGTCAGCTTCTGGT 221651 ||||||| | |||| ||||| || || || | || ||| || ||||||| Sbjct 792 CGTCGATAATCCTGTTCAGGTTGCGAACGACAACCTGTGTGACGTCGTGCAACTTCTGGA 851 Query 221652 GATTGAACACCAACTCGCCGCCGTCGTGGAGGGGTTCCACAAAAGCGTTTAGGGCAACGC 221711 | | | ||| | | |||| || | | || || || ||||| | Sbjct 852 AGTC--ATAGCAAG----CATCATCGT--AGTTGATGAACGAAGGC----AGGGCCAGAG 899 Query 221712 TGGCCAGGTTACACACGGCCACCTCGTCCTTGTTGGTATACTGTATGATCTCTGTACAGA 221771 || ||||| || || || ||||| || | | |||| || ||||| || |||| Sbjct 900 AAGCAAGGTTGCAGACAGCAACCTCATCAGGGGCGCAGTACTCGATAATCTCGGTGCAGA 959 Query 221772 GGTTGCTGCACTTGATGGTCCCCAGGTGATTGTGATTAGACTTGCGATTGGCAGCG-TCC 221830 | ||| || |||||| ||||||| || || || |||||| ||| ||| | ||| Sbjct 960 GATTGGAGCTACGGATGGTGCCCAGGTTCTTCTGGTTGCTCTTGCGGTTG-CAGTGGTCC 1018 Query 221831 TTGTAGAGCATAAAGGGACCGCCAGTCTCCAGCTGAGCCACCAGAATCTTGTCCCAGAGT 221890 ||||||||||| ||||| ||| ||||| ||| ||| | || || | |||||| Sbjct 1019 TTGTAGAGCATGAAGGGGTTGCCGGTCTCGGTCTGCGCCTCGAGGATGGCATACCAGAGC 1078 Query 221891 TCTCTGGCGCTCACCGTCCTCTTGACTGCACCCTCG---GTCTTTTCATACCCG--GTAT 221945 | ||||| || | | ||||| ||||| | | ||| |||||| ||| Sbjct 1079 T-TCTGGGCCTT--CATGGTCTTGCG---ACCCTTGCCCGCCTTCTCATACTTTTCGTAA 1132 Query 221946 AGAGCATGTCAAACTTTTCACCGTACGCCTCGTCCAGGCCTGGACACCTGGCGGGACACA 222005 ||||| | | |||| || || || ||| |||| || || ||| | |||||||| Sbjct 1133 AGAGCCT--CGAACTCCTCGCCATAGCAGTCGGCCAGACCGGGGCACTCGTTGGGACACA 1190 Query 222006 TCAGACTCCAGTGCTTGTTGTCTTTGACCCTCTGCATGAAGAGGTCCGGGATCCACAGCG 222065 | || |||||| ||| | | ||| | || ||||||||| || || ||||| || | Sbjct 1191 TGAGGGTCCAGTCACCGTTCTTCTCGACACGCTTCATGAAGAGATCGGGAATCCAGAGAG 1250 Query 222066 CCTGAAAGAGATCTCTGGTCCGCTGCTCCTCCACGCCGTTGTTTTTCCTCAGATCCAAAA 222125 || | || || || | || || ||||||| ||||| ||| || | ||| || | | Sbjct 1251 CCAGGAACAGGTCGCGGGCGCGGACCTCCTCCTTGCCGTGGTTCTTGCGCAGGTCAAGGA 1310 Query 222126 ACTCAAAAATGTCAGCGTGCCACGGCTCCAGATAGACGGCCAGAGCGCCGGGTCGCTTGT 222185 ||||||| | || |||||||| ||||| || |||| ||| | || || |||||||||| Sbjct 1311 ACTCAAAGACATCTGCGTGCCAGGGCTCAAGGTAGATGGCAAAGGCACCAGGTCGCTTGT 1370 Query 222186 TGCCACCCTGATCCACCATCCTCTCCAGAG-CGTTGAAGATGCGAAGGGTCGGTACCAGT 222244 |||||||||| || | | | | ||| | |||||||| ||||| | || | Sbjct 1371 TGCCACCCTGGTCGA-CGTACCGGGCAGTGTTGTTGAAGACACGAAGCATGGGGGTGACA 1429 Query 222245 CCGTTGGATCGACCGTTGGTGCCCTTAATGTACGCACCGCCGGCCCTCAGGTTAC--TGG 222302 |||||||| ||||||||| || ||||| | || ||| | || | | ||| Sbjct 1430 CCGTTGGAGGTACCGTTGGTACCAGCGATGTAAGAGCCAGTGGCAC---GGATTCGGTGG 1486 Query 222303 -CAGACATGCCGATACCACCGGCGTGTTTCGAGATCATGGCGCAGCTCTTGAGAGTGTCC 222361 | || |||||||||||| || || ||||||||||| ||| |||||||||| || Sbjct 1487 ACGTTCAGGCCGATACCACCCGCCATCTTGGAGATCATGGCACAGGTCTTGAGAGTATCA 1546 Query 222362 ATGATGCCCTCCATAGAGTCCTCCTTGACGTTCAGCAGAAAACAAGACGACATCTGAGAT 222421 || ||||| || |||||| || | || | ||| || || || |||| ||||| Sbjct 1547 TAAATACCCTCAATGCTGTCCTCTTTCATGTCGACCAGGAAGCATGAGGACAGCTGAGGC 1606 Query 222422 TTGGTGGAACAGGCGTTAAACAGCGTGGGACTGGCGTGTGTAAAGTAGCCCCTAGACATC 222481 | || | || || || || || ||||| ||| || || ||| | || |||||| Sbjct 1607 TGGGGAGTACCAGCATTGAAGAGGGTGGGGGAGGCATGGGTGAAGAATTTGCTCGACATC 1666 Query 222482 AGATCGTACGTCTCTACGACTCTGGCGATGTTGTC-CCCGTGAATCTGCATGGCGCATCT 222540 || | ||| ||||| | ||| | | || | ||| ||| || | | | | || | Sbjct 1667 AGGTTGTAGGTCTCCAGGACACGCTCAATATCGTCACCCCAGATGCCGACAGACACA-CG 1725 Query 222541 CATGTACATGTACTGGGGCCTCTCCACAGGACCCTTGGAGC--TGGAGAGCAGGTACGAT 222598 |||| ||||| |||||| | ||| ||| | | | | | | ||| ||||| ||| Sbjct 1726 CATGATCATGTGCTGGGGACGCTCAACA--ATCTTGCCATCAATCTTGAGGAGGTAGGAT 1783 Query 222599 TTTTCCAGAGTCTTGAACCCAAAGTAGTTGAGGTCAAAGTCTCTGCCGTGAACCACGGCG 222658 || ||||||||||| |||||||| | | | ||||| | | | | || | ||| Sbjct 1784 CGCTCAAGAGTCTTGAAGCCAAAGTACTGGTATTGGAAGTCACGGTCATAGACAATGGCC 1843 Query 222659 GCGTCCAGCTCCGACTTGT---GCTTTACGCTCAACTCGAAAAAGCGCTCAGACACGAGG 222715 | ||| |||||| ||||| || | |||| |||| | | || | | | Sbjct 1844 GAGTCTAGCTCCTCCTTGTGGCGCATGACGC---ACTCATATGTTTCTTTGGAGATCATG 1900 Query 222716 GGAGCGTTCTCTTTGGTGTCGGGGTTAACGTTGTGGTACAGCTGCCACATGGCATCAGA- 222774 || | | || ||| | | |||||| |||| |||||| || | | || | | || Sbjct 1901 GGCGAGGGCTTATTGTTCTTGGGGTTGACGTAGTGGTAGAGGTCGCTCACGACGGTGGAC 1960 Query 222775 GAACGTGTCGGGAGTCTGCTTGTGCAGATTCGACACGGCGATCCGAGACGCCAAGATACC 222834 | | || | ||||||||||| || || || |||||||| || | ||| | ||| | Sbjct 1961 CATTGCTTCTTG-GTCTGCTTGTGGAGGTTGGAGACGGCGATACGGGCCGCGAGGATGGC 2019 Query 222835 ATAGTCAGGGTGCACGGTGGTCATG 222859 |||||| ||||| | ||||||| Sbjct 2020 ATAGTCGGGGTGGGTGACGGTCATG 2044 Score = 104 bits (114), Expect = 4e-17 Identities = 104/135 (77%), Gaps = 0/135 (0%) Strand=Plus/Plus Query 221116 GTTCACCACTTGGAAATCTCCCGAGAGCACCCTCCTCTGGTACAGGTTAGAAGTGAACGG 221175 ||| || || ||||| || || | ||| || | | |||||| | ||| || ||| | || Sbjct 325 GTTGACGACCTGGAACTCGCCAGCGAGGACACGGCGCTGGTAGATGTTGGAGGTGTAAGG 384 Query 221176 TTCGATGCTCTCGTTGTTGCCCAGGATCTGAGCCGTGCTGGCGGTGGGCATGGGTGCCAC 221235 |||| || ||||||||||||||||||||| | || ||||| || ||||| || || | Sbjct 385 CTCGAAGCACTCGTTGTTGCCCAGGATCTGCGAAGTACTGGCAGTAGGCATAGGGGCAAG 444 Query 221236 CAGCAGACTGTTGCG 221250 ||||||||||||||| Sbjct 445 CAGCAGACTGTTGCG 459 >seq3398 Length=5185 Score = 190 bits (210), Expect = 4e-43 Identities = 557/857 (65%), Gaps = 24/857 (3%) Strand=Plus/Minus Query 25477 ATATGGGAGATGTACAAGAAGGCTCAAAACTCAAACTGGACCGCCGAAGAGATTGATCTG 25536 || ||| |||||||||||||||| | ||| |||||| ||||| ||||||||| | Sbjct 1830 ATCTGGCAGATGTACAAGAAGGCCGAGGCCTCTTTCTGGACTGCCGAGGAGATTGATTTA 1771 Query 25537 GCCAAGGACATGGACGGCTGGTAC----GCTCTATCCAAAGACGAGCAGCATTTTCTCAA 25592 ||||||| | ||| |||| || || || | ||||||||| || || Sbjct 1770 TCCAAGGATCTCCACGACTGGAACAACCGC-CTGACTGCCGACGAGCAGTTCTTCGTCTC 1712 Query 25593 GTACGTGTTGGCATTCTTTGCAGCCTCTGATGGTATAGTGAACGAGAATCTGTGCGAGAG 25652 || | | || ||||| || || ||||| || || || |||||||| || |||| | Sbjct 1711 CCACATCCTCGCCTTCTTCGCTGCATCTGACGGCATCGTCAACGAGAACCTTGTCGAGCG 1652 Query 25653 ATTCACCAGGGAAGTGCAGTACGTGGAGGCCAAGTGTTTCTACGGTTTCCAGATGGCCAT 25712 ||||| | | || || ||| | |||||| || |||||||| |||||||| || Sbjct 1651 ATTCAGCGGCGAGGTCCAGATCCCCGAGGCCCGATGCTTCTACGGCTTCCAGATCATGAT 1592 Query 25713 CGAAAATGTGCACTCTGAGGTGTATGCCAAGCTTCTGATG---ACGTACATTACAGACGT 25769 || || | ||||| ||| || | ||| || || || ||||| | || Sbjct 1591 GGAGAACATCCACTCCGAGACCTACTC---GCTCCTCATTGACACCTACATCAAGGAGCC 1535 Query 25770 CGCCGAGAGAGATCGGCTGTTTGGTGCCATCGAGCACATACCCAGCATCAAGAGGAAGGC 25829 || | || || || ||||| ||| ||| ||| ||||| | |||||| Sbjct 1534 TGCTCAACGAACCTACCTCTTCAACGCCATTGAGACCATCCCCTGCATCCGCAAGAAGGC 1475 Query 25830 GCGGTGGGCCATGAAGTGGATCAACAGCCAGAGCGCTACGTTTGGCGAGCGGCTGGTAGC 25889 |||||||| |||||| | | ||| | | | |||| |||| || || || Sbjct 1474 CGACTGGGCCATCCGATGGATCCAGGACAAGAACTCGTCCTTTGCTCAGCGTCTCGTCGC 1415 Query 25890 CTTTGCTGCTGTGGAGGGCATCTTTTTCAGCGGTTCGTTTGCGGCCATCTTCTGGCTCAA 25949 |||||||| || ||||| ||||| ||||||||| | ||||| |||||||||||||||| Sbjct 1414 TTTTGCTGCCGTCGAGGGTATCTTCTTCAGCGGTGCCTTTGCCTCCATCTTCTGGCTCAA 1355 Query 25950 GCAGAAGGGGACCATGCCCGGGCTGTACTTTTCCAACGAGCTCATCAGCAGGGACGAGGG 26009 | || || |||||| || ||| ||||||||||||||||||| | |||||||| Sbjct 1354 GAAGCGTGGCCTCATGCCTGGCCTGACCTTTTCCAACGAGCTCATCTCTCGTGACGAGGG 1295 Query 26010 TCTCCACAGAGATTTTGCCTGCCTGCTCTACACGGGCCACTTGCTCCACAAACCTTC--T 26067 ||| |||| || ||||| ||||| ||| || | |||| ||| | | | | Sbjct 1294 TCTTCACACCGACTTTGCATGCCTCCTCCACTC---CCAC---CTCAAGGGCCGTGCCAG 1241 Query 26068 CAAG-AGACCGTCTACAGTATCATCAAAGAGGCTGTGGAGATCGAGAAGGAGTTTCNNNN 26126 |||| || | || | ||||||| || || || || ||| ||||||| | Sbjct 1240 CAAGCAGGTCATCCAGGACATCATCACCGATGCCGTCACCATTGAGCAGGAGTTCCTGAC 1181 Query 26127 NNNNNNNNNNNNNNNNNNNNNNNTGGGCATGAACAACAGACTCATGAGCCAATACATTGA 26186 | ||||||||| | ||||||| || ||||| || Sbjct 1180 CGAGGCCCTCCCCTGCGCCCTGCTCGGCATGAACGCCGACCTCATGAAGCAGTACATCGA 1121 Query 26187 GTATGTGGCCGACCATCTGCT-GT-GCCAGCTGGGACTCGCCAGACTCTACAGTACGCCT 26244 || || ||||||| || || || ||| || || || | |||||| | | Sbjct 1120 GTTCGTCGCCGACCGCCTCCTCGTCGCC--CTCGGCAACGAGAAGGTCTACAAGGCCACC 1063 Query 26245 AACCCGTTCGACTTTATGGAAAACATATCGTTGGAAGGGAAGACCAACTTCTTTGAAAAG 26304 ||||| |||||||| ||||| ||||| || | | || |||||||||||||| || ||| Sbjct 1062 AACCCCTTCGACTTCATGGAGAACATCTCCCTCGGTGGCAAGACCAACTTCTTCGAGAAG 1003 Query 26305 AGGGTCGGCGACTATCA 26321 | ||||| ||||| || Sbjct 1002 CGTGTCGGTGACTACCA 986 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 928578000941760