Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Fusarium_20tucumaniae_20[genbank_20GCA_5F001680595.1_202016-07-06]
22,979 sequences; 49,676,379 total letters
Query= NC_021858.1
Length=1908524
Score E
Sequences producing significant alignments: (Bits) Value
seq21462 156 5e-32
seq3398 154 2e-31
seq8513 129 7e-24
seq2660 125 9e-23
seq19343 118 1e-20
seq7023 116 5e-20
seq8800 100 3e-15
seq489 93.3 5e-13
>seq21462
Length=366
Score = 156 bits (172), Expect = 5e-32
Identities = 216/303 (71%), Gaps = 6/303 (2%)
Strand=Plus/Minus
Query 18193 CGGCGCCGACCGGGCCAGGGCGCACTTTCCACGCCGCGCAACGAGCCCGATCGCGTCATC 18252
|| ||||| ||||||||| || | | ||||| || ||||| ||||| |||| |
Sbjct 352 CGCCGCCGCCCGGGCCAGTCGGCCATCACGACGCCCCGGAACGAAAAGGATCGTGTCACC 293
Query 18253 ATCCAGTCGGGCACGGAGAACGGCCTCACGCTCGGCTCGCCCGTCGGCCTCTTTGTGGCC 18312
||||| |||||||| ||||||||| |||| |||||| | || || |||| || ||
Sbjct 292 ATCCACTCGGGCACCGAGAACGGCGTCACCCTCGGCACCCCGATCCTCCTCACCGTCCCC 233
Query 18313 AACCGCGACCAGCGGCCCGTCGACTATTCCGACATGTGCAAGGTGC------CGCGGCCC 18366
||| |||||||||||| ||||| ||||| | || | | |||| |||
Sbjct 232 AACGAGGACCAGCGGCCCAAGGACTACGGCGACAAGACCATCGACCTCTACCCGCGCCCC 173
Query 18367 TCACACGCCGACTACACCTACATGGCCAAGTACGGCATCAAGGCGTCGTCGGGCGGAGGC 18426
|||||||||| |||||| ||| ||||||||| ||||||| ||||| || || ||
Sbjct 172 AGCCACGCCGACTGGACCTACCTGGAAAAGTACGGCGTCAAGGCCTCGTCCGGTGGTGGT 113
Query 18427 CGGTCGTCTGCCCGCGAGACCCTCATGCGCGTCGCCGCCGGCGCGGTCGCCGAGAAATGG 18486
|| ||||| || |||||| || | ||||||||||| || ||||| || || |||
Sbjct 112 CGCAGCTCTGCTCGTGAGACCATCGCTAGAGTCGCCGCCGGTGCTGTCGCTGAAAAGTGG 53
Query 18487 CTC 18489
|||
Sbjct 52 CTC 50
>seq3398
Length=5185
Score = 154 bits (170), Expect = 2e-31
Identities = 185/250 (74%), Gaps = 1/250 (0%)
Strand=Plus/Plus
Query 868691 GCCTTGGCGTACTCGCCCACGCGCCGCTCGAAAAAGTTGGTCTTGCCCTCGAGCGAGATC 868750
||||| ||| || || || ||| |||||| |||||||||||||| |||| |||||
Sbjct 980 GCCTTCTGGTAGTCACCGACACGCTTCTCGAAGAAGTTGGTCTTGCCACCGAGGGAGATG 1039
Query 868751 AACTCCATCCACGGGAACGGGTTGGGCGTCTTGTAGTGCTTTTCGCATCCGAGCGACGCG 868810
|||||| | ||| ||||||| | ||||||| ||| ||| ||||| | ||
Sbjct 1040 TTCTCCATGAAGTCGAAGGGGTTGGTGGCCTTGTAGACCTTCTCGTTGCCGAGGGCGACG 1099
Query 868811 AGCAGGCGGTCGGCGACAAACTCGATGTACTGGCACATGAGGCCGGCGTTCATGCCGATG 868870
|| |||||||||||||| |||||||||||||| ||||||| |||||||||||||||
Sbjct 1100 AGGAGGCGGTCGGCGACGAACTCGATGTACTGCTTCATGAGGTCGGCGTTCATGCCGAGC 1159
Query 868871 AGCGCCACCGGCAGCGACTCGCTCACAAACTCTTTCTCGATCTCGACGGCCTCGACGATG 868930
|| || || || | |||| ||| ||||| | ||| || |||||| ||| ||||
Sbjct 1160 AGGGCGCAGGGGAGGGCCTCGGTCAGGAACTCCTGCTCAATGGTGACGGCATCGGTGATG 1219
Query 868931 ATCTGCCTGG 868940
|| | |||||
Sbjct 1220 ATGT-CCTGG 1228
Score = 150 bits (166), Expect = 2e-30
Identities = 213/291 (73%), Gaps = 15/291 (5%)
Strand=Plus/Plus
Query 869179 ACCTTCGTCGCGACTGATCATTTCGTTGCTAAAGGCGAGGCCGGGCATGAGGCCGCGCTT 869238
||| ||||| ||| ||| | |||||| ||||| ||||| ||||||||||| |||||
Sbjct 1294 ACCCTCGTCACGAGAGATGAGCTCGTTGGAAAAGGTCAGGCCAGGCATGAGGCCACGCTT 1353
Query 869239 CTTGAGCCAAAAGATGGCGCAGAAACTGC-CCG-AGAAAAAGATGCCCTCGACGGCGGCA 869296
||||||||| ||||||| | | || || ||| ||| ||||| ||||||||||| |||
Sbjct 1354 CTTGAGCCAGAAGATGGAG--GCAAAGGCACCGCTGAAGAAGATACCCTCGACGGCAGCA 1411
Query 869297 AAGCCGATGAGCCGCTCGGCAAAGGTGTCGAGGCCCTCCTTG---TTGATCCACTTCATC 869353
|| ||| ||| |||| |||||| | |||| | |||| | |||||| ||
Sbjct 1412 AAAGCGACGAGACGCTGAGCAAAG--GACGAG----TTCTTGTCCTGGATCCATCGGATG 1465
Query 869354 GCCCAGTCGGCCTTTTTCCTCACCGACGGCACCGTGTCGATGGCGCGAAAGAGGT-GGTC 869412
|||||||||||||| || | | | || | || || |||||| ||||||| |||
Sbjct 1466 GCCCAGTCGGCCTTCTTGCGGATGCAGGGGATGGTCTCAATGGCGTTGAAGAGGTAGGTT 1525
Query 869413 CTTTTCGGCCGGGTCCTTGACATAGGTGTCGATCAGGAGCGAATAGGTCTC 869463
| || || || ||||||| |||||||| || |||||||| ||||||||
Sbjct 1526 C-GTTGAGCAGGCTCCTTGATGTAGGTGTCAATGAGGAGCGAGTAGGTCTC 1575
>seq8513
Length=2088
Score = 129 bits (142), Expect = 7e-24
Identities = 299/448 (67%), Gaps = 17/448 (4%)
Strand=Plus/Plus
Query 1630065 CTGGTCGACGTAGCGCGCCGTGTCGTTAAAGACGCGGAGCATGGGCACGAGGCCGTTGGA 1630124
|||||||||||| || || |||| ||| ||||| || |||||||| || ||||||||
Sbjct 1378 CTGGTCGACGTACCGGGCAGTGTTGTTGAAGACACGAAGCATGGGGGTGACACCGTTGGA 1437
Query 1630125 CTCGCCGTTGGTGCCCGCCACGTAGGCGCCGGCGGCGCGCACCTTGTGCGCGGCAAAGCC 1630184
|||||||| || || | ||| | ||| | ||| || | ||| || | |||
Sbjct 1438 GGTACCGTTGGTACCAGCGATGTAAGAGCCAGTGGCACGGATTCGGTGGACGTTCAGGCC 1497
Query 1630185 GATGCCGCCGGCCGACTTGGAGATGAGCGCGCACTGTTTGAGCGTGTCGTAGATGCCCTC 1630244
||| || || ||| ||||||||| | || || ||||| || || || || |||||
Sbjct 1498 GATACCACCCGCCATCTTGGAGATCATGGCACAGGTCTTGAGAGTATCATAAATACCCTC 1557
Query 1630245 GATCGAGTCGGCCTTCATGTCCACGAGAAAGCACGACGAGTTTTGCGGGTGCGCCGTGCC 1630304
|| ||| | |||||||| || || ||||| || || || || || | || ||
Sbjct 1558 AATGCTGTCCTCTTTCATGTCGACCAGGAAGCATGAGGACAGCTGAGGCTGGGGAGTACC 1617
Query 1630305 GGCGTTGAAGAGCGTGGGCGTCGCCGCGGTGAACAACTGCCGCGACATGGCGTCGTAGGT 1630364
|| |||||||| ||||| | || |||||| || | | |||||| || ||||||
Sbjct 1618 AGCATTGAAGAGGGTGGGGGAGGCATGGGTGAAGAATTTGCTCGACATCAGGTTGTAGGT 1677
Query 1630365 GGCGAGCACGCGCGCCAGCGCATCGTCCACGTCGGCAAACCCATAGTGGCCGATGGCGAC 1630424
| || || ||| | | |||||| |||| || ||||| | ||
Sbjct 1678 CTCCAGGACACGCTCAA---TATCGTC-----------ACCC-CAGATGCCGACAGACAC 1722
Query 1630425 GCGCATGAGCATGTACTGGGGCCGCTCGACGACGACGCCGCGCACCTTGGTCAGGTAGGA 1630484
||||||| ||||| |||||| ||||| || | ||| | |||| ||||||||
Sbjct 1723 ACGCATGATCATGTGCTGGGGACGCTCAACAATCTTGCCATCAATCTTGAGGAGGTAGGA 1782
Query 1630485 CCGGCGCATG-GTCATGAGGCCAAAGTA 1630511
| || || | ||| ||| |||||||||
Sbjct 1783 TC-GCTCAAGAGTCTTGAAGCCAAAGTA 1809
Score = 113 bits (124), Expect = 6e-19
Identities = 288/443 (65%), Gaps = 8/443 (2%)
Strand=Plus/Plus
Query 1628162 ACTGGACGATCTCGGTGCACAGGTTGG-CCGACGTCGTCGTACCCAGGTTCTGCTGGTTG 1628220
||| || ||||||||||| || |||| | ||| | || |||||||||| |||||||
Sbjct 939 ACTCGATAATCTCGGTGCAGAGATTGGAGCTACG-GATGGTGCCCAGGTTCTTCTGGTTG 997
Query 1628221 GTGGTCAGGTTGACGGCGTCCTTGTGGAGCATGTAGGGCGCGCCGGTCTCGATCTGCGCC 1628280
| | ||||| | |||||||| ||||||| |||| |||||||||| ||||||||
Sbjct 998 CTCTTGCGGTTGCAGTGGTCCTTGTAGAGCATGAAGGGGTTGCCGGTCTCGGTCTGCGCC 1057
Query 1628281 GCGACGATGGCCGACCAGATCTGGCGCGCGGGCACGACAGTCCGCGCGCGGCCCTNNNNN 1628340
||| |||||| |||||| || | || || | | || | ||||
Sbjct 1058 TCGAGGATGGCATACCAGAGCTTCTGGGCCTTCATGGTCTTGCGACCCTTGCCCGCCTTC 1117
Query 1628341 NNNNNNNNNNNNNNNNNNNNNTCAAAGGCCGCGCCGTAGCACTCGTGCAGGCCGGGCGCC 1628400
|| || || |||| ||||| ||| ||| ||||| |
Sbjct 1118 TCATACTTTTCGTAAAGAGCCTCGAACTCCTCGCCATAGCAGTCGGCCAGACCGGGGCAC 1177
Query 1628401 TCGGACGGACAAAAGAGCGACCAGTCGCCACCGGTCACCGCG---CGGCGCATAAAGAGG 1628457
||| ||||| | ||| | ||||| ||||| || | || || ||| |||||
Sbjct 1178 TCGTTGGGACACATGAGGGTCCAGT---CACCGTTCTTCTCGACACGCTTCATGAAGAGA 1234
Query 1628458 TCACACGTCCACAGTGCGTAAAAGAGGTCGCGCGCCCGGTTCTCCTCCTTGCCGTGGTTC 1628517
|| |||| || || || |||||||| || ||| |||||||||||||||||||
Sbjct 1235 TCGGGAATCCAGAGAGCCAGGAACAGGTCGCGGGCGCGGACCTCCTCCTTGCCGTGGTTC 1294
Query 1628518 TTTTTGAGGTCGAGCCAGTCGACAATGTCGGCGTGCCACGGCTCCAGGTAGCAGGCAAAG 1628577
|| ||||| || | || | | || |||||||| ||||| |||||| |||||||
Sbjct 1295 TTGCGCAGGTCAAGGAACTCAAAGACATCTGCGTGCCAGGGCTCAAGGTAGATGGCAAAG 1354
Query 1628578 GCGCCCTTGCGCTTGCCGCCGCC 1628600
|| || |||||| ||| ||
Sbjct 1355 GCACCAGGTCGCTTGTTGCCACC 1377
Score = 91.5 bits (100), Expect = 2e-12
Identities = 160/228 (70%), Gaps = 4/228 (2%)
Strand=Plus/Plus
Query 1627293 CGTCCACAGGCCGCGCGCCATCA-GGCGCTTGACCAGGTGGCGGTTGACCACGGTAAAGT 1627351
|| ||||||||| | | || || || ||||| ||| | ||||||| || || |
Sbjct 283 CGACCACAGGCC-CATGTCAACAAGGTCCTTGAGCAGCCAGGGGTTGACGACCTGGAACT 341
Query 1627352 CGCCCGAGAGCACGCGGCGCGTGTAGATGTTGTTGGTGATGACCTCGCACGCCTCGGTGT 1627411
|||| | ||| || |||||| |||||||||| |||| |||| | |||| |||
Sbjct 342 CGCCAGCGAGGACACGGCGCTGGTAGATGTTGGAGGTGTAAGGCTCGAAGCACTCGTTGT 401
Query 1627412 TGCCCAGGATCTGCGACGTCGTGGCCGTGGGCATGAGCGCCACGAGGAGCGAGTTGCGCA 1627471
|||||||||||||||| || |||| || ||||| | || | || || |||||| |
Sbjct 402 TGCCCAGGATCTGCGAAGTACTGGCAGTAGGCATAGGGGCAAGCAGCAGACTGTTGCGAA 461
Query 1627472 GGCCGTGCT-GTCGAACTAGCGCGCGCAGCGCGTCCCAGTCCCAGCGG 1627518
|||||||| | || || || | || || |||||||||||| ||
Sbjct 462 TGCCGTGCTCCTTGACCT-GCTCCCGGAGGTTCTCCCAGTCCCAGAGG 508
>seq2660
Length=6014
Score = 125 bits (138), Expect = 9e-23
Identities = 93/109 (85%), Gaps = 0/109 (0%)
Strand=Plus/Plus
Query 1592186 GCCGCCAACTACCTCGACATCAAGCCTCTGCTCGATCTTGGGTGCAAGTCTGTGGCCAAC 1592245
||| ||||||| |||||||||||||| || || ||| | || |||||| | || ||||||
Sbjct 2540 GCCTCCAACTATCTCGACATCAAGCCCCTTCTTGATGTCGGCTGCAAGACCGTCGCCAAC 2599
Query 1592246 ATGATCAAGGGCAAGTCGCCCGAGGAGATCCGCAAGACCTTTAACATCA 1592294
||||||||||||||||| ||||||||||| || ||||| || |||||||
Sbjct 2600 ATGATCAAGGGCAAGTCTCCCGAGGAGATTCGGAAGACTTTCAACATCA 2648
>seq19343
Length=515
Score = 118 bits (130), Expect = 1e-20
Identities = 119/155 (77%), Gaps = 0/155 (0%)
Strand=Plus/Minus
Query 19047 GACAGCATCGGCGGCACGGTGACGTGCGTGTGTCGCAACGTGCCGGCAGGCCTCGGCGAG 19106
||||||| ||||||||| || || ||||| || || ||||| | ||||||||||||
Sbjct 499 GACAGCACCGGCGGCACCGTCACCTGCGTCATCCGTAATGTGCCCTCTGGCCTCGGCGAG 440
Query 19107 CCGTGCTTTGACAAGATCGAGGCCGCGCTCGCCCACGCCATGCTGTCGATCCCGGCCACC 19166
|| ||||| |||||| | |||||| ||||| ||||||||| |||| ||||| ||| |
Sbjct 439 CCCTGCTTCGACAAGCTGCAGGCCGTCCTCGCACACGCCATGATGTCCATCCCCGCCGTC 380
Query 19167 AAGGGATTCGAGATTGGCAGCGGGTTTGCGGGTGC 19201
|||| || ||| ||||| ||| ||| ||| ||
Sbjct 379 AAGGCCTTTGAGTTTGGCTCCGGCTTTCTGGGCGC 345
>seq7023
Length=2475
Score = 116 bits (128), Expect = 5e-20
Identities = 139/189 (74%), Gaps = 0/189 (0%)
Strand=Plus/Plus
Query 1574046 AAGAGGATCGACCTGCCGCCCGGACGCCACAAGGTGATCATCCTCGACGAGGCCGACTGC 1574105
|||| | || ||||||| |||| ||||||||| || ||||||||||||| || ||| ||
Sbjct 1262 AAGAAGGTCACCCTGCCGGCCGGCCGCCACAAGCTGGTCATCCTCGACGAAGCTGACAGC 1321
Query 1574106 CTCACGTCGGCGGCCCAGCAGGCCCTGCGGTCCACCATGGAAAAGCACACCAACACGACG 1574165
| || |||| |||||||| || || || |||||||||| || ||||||||||
Sbjct 1322 ATGACCTCGGGCGCCCAGCAAGCACTCCGACGAACCATGGAAATCTACTCCAACACGACC 1381
Query 1574166 CGCTTTGCCCTGGCGTGCAACACGTCGTCGATGGTCATCGAGGCCCTCCAAAGTCGCTGC 1574225
| || ||| | || |||||| ||| | | |||| ||| |||| ||| || |||
Sbjct 1382 AGATTCGCCTTTGCCTGCAACCAGTCCAACAAGATCATTGAGCCCCTACAATCGCGATGC 1441
Query 1574226 GCCATTCTG 1574234
||||| |||
Sbjct 1442 GCCATCCTG 1450
>seq8800
Length=1347
Score = 100 bits (110), Expect = 3e-15
Identities = 135/188 (72%), Gaps = 0/188 (0%)
Strand=Plus/Plus
Query 18100 GGCGAGTCGCACGGGGCGGGCGTCGGCTGCATCATCGACGGCGTGCCGCCGTGCATGCCA 18159
|||||||| ||||| | ||| |||||||||||| | || || ||| |
Sbjct 1153 GGCGAGTCCCACGGCAAGTCAGTCTCGTGCATCATCGACAACTGCCCCCCCAACATTGCC 1212
Query 18160 CTGGCCGAGGCCGACATCCAGCCTCAGTTGGATCGGCGCCGACCGGGCCAGGGCGCACTT 18219
|| ||||||||||||| ||||| ||| | | || ||||| ||||||||| || |
Sbjct 1213 CTCACCGAGGCCGACATTCAGCCCCAGCTCAACCGCCGCCGCCCGGGCCAGTCGGCCATC 1272
Query 18220 TCCACGCCGCGCAACGAGCCCGATCGCGTCATCATCCAGTCGGGCACGGAGAACGGCCTC 18279
| ||||| || ||||| ||||| |||| |||||| |||||||| ||||||||| ||
Sbjct 1273 ACGACGCCCCGGAACGAAAAGGATCGTGTCACCATCCACTCGGGCACCGAGAACGGCGTC 1332
Query 18280 ACGCTCGG 18287
|| | |||
Sbjct 1333 ACCCCCGG 1340
>seq489
Length=14457
Score = 93.3 bits (102), Expect = 5e-13
Identities = 257/386 (67%), Gaps = 16/386 (4%)
Strand=Plus/Minus
Query 511949 GGCGTGGACGCCTCGCGCAGTCACACCAACGACATCAACCGCGTGGCCGCCGTGCTGGGC 512008
||||| ||||| ||||| | ||||||||||| | | |||| || ||| | ||
Sbjct 1054 GGCGTCGACGCTTCGCGGACATACACCAACGACCTGTGGCAAGTGGTCGAGGTGTTTGGT 995
Query 512009 ATCGAGGCCGCCGTGGCCGTGCTCTTTTCC--GAGATCAAGGCCGTCATCTCCTTTGACG 512066
|||||||| ||| | || ||||| || ||| | | ||| | | |||||||
Sbjct 994 ATCGAGGCAGCCC-GTTCG-GCTCTGGTCAAGGAGTTGACCAACGTGCTGGCGTTTGACG 937
Query 512067 GCACCTACGTCAACGACCGCCACTTTGCGCTGGCCACCGACACCATGTGCTGCCGCGGAT 512126
| ||||||||||| | || ||| |||||||| || || |||| | | | ||||
Sbjct 936 GTTCCTACGTCAACCATCGTCACATTGCGCTGCTGACAGATGTCATGACGTACAGAGGAT 877
Query 512127 CGGTGGTGGCCGTCACGCGCCACGGCTTCAACCGCGCCGACCACGGCTTC-CTGTCGCGG 512185
| | ||| || || || ||||| ||||||| || || ||| | | | ||| |||
Sbjct 876 CCATCTCGGCTGTGACCCGACACGGTATCAACCGTGCTGA-CACTGGTGCTCTGATGCGT 818
Query 512186 GCCTCTTTCGAAGAGACCGTCGACATCCTCTTTGACGCGGCGGCCTTTGCCGAGACCGAC 512245
|||||||| ||||| ||||| ||| | | || || || || | || | || | |
Sbjct 817 TGTTCTTTCGAGGAGACGGTCGAGATCTTGCTCGAGGCTGCCGCGTCTG--GTGAGCTAG 760
Query 512246 AAGATCACCGACG--GCTCGGTGACCGAGCCCATCATCCTGGGCCAGACGGCGCCCATCG 512303
| || |||| | ||||| || || |||| |||||||||| |||||| || |
Sbjct 759 ATGACTGCCGAGGTATCTCGGAGAACG------TCATGCTGGGCCAGATGGCGCCAATGG 706
Query 512304 GCACGGCCATCTCGGACGTGCTCGTG 512329
|||||| | || || |||||| ||
Sbjct 705 GCACGGGTAACTTTGATGTGCTCCTG 680
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 6105253435649343
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