Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Fusarium_20tucumaniae_20[genbank_20GCA_5F001680595.1_202016-07-06] 22,979 sequences; 49,676,379 total letters Query= NC_021858.1 Length=1908524 Score E Sequences producing significant alignments: (Bits) Value seq21462 156 5e-32 seq3398 154 2e-31 seq8513 129 7e-24 seq2660 125 9e-23 seq19343 118 1e-20 seq7023 116 5e-20 seq8800 100 3e-15 seq489 93.3 5e-13 >seq21462 Length=366 Score = 156 bits (172), Expect = 5e-32 Identities = 216/303 (71%), Gaps = 6/303 (2%) Strand=Plus/Minus Query 18193 CGGCGCCGACCGGGCCAGGGCGCACTTTCCACGCCGCGCAACGAGCCCGATCGCGTCATC 18252 || ||||| ||||||||| || | | ||||| || ||||| ||||| |||| | Sbjct 352 CGCCGCCGCCCGGGCCAGTCGGCCATCACGACGCCCCGGAACGAAAAGGATCGTGTCACC 293 Query 18253 ATCCAGTCGGGCACGGAGAACGGCCTCACGCTCGGCTCGCCCGTCGGCCTCTTTGTGGCC 18312 ||||| |||||||| ||||||||| |||| |||||| | || || |||| || || Sbjct 292 ATCCACTCGGGCACCGAGAACGGCGTCACCCTCGGCACCCCGATCCTCCTCACCGTCCCC 233 Query 18313 AACCGCGACCAGCGGCCCGTCGACTATTCCGACATGTGCAAGGTGC------CGCGGCCC 18366 ||| |||||||||||| ||||| ||||| | || | | |||| ||| Sbjct 232 AACGAGGACCAGCGGCCCAAGGACTACGGCGACAAGACCATCGACCTCTACCCGCGCCCC 173 Query 18367 TCACACGCCGACTACACCTACATGGCCAAGTACGGCATCAAGGCGTCGTCGGGCGGAGGC 18426 |||||||||| |||||| ||| ||||||||| ||||||| ||||| || || || Sbjct 172 AGCCACGCCGACTGGACCTACCTGGAAAAGTACGGCGTCAAGGCCTCGTCCGGTGGTGGT 113 Query 18427 CGGTCGTCTGCCCGCGAGACCCTCATGCGCGTCGCCGCCGGCGCGGTCGCCGAGAAATGG 18486 || ||||| || |||||| || | ||||||||||| || ||||| || || ||| Sbjct 112 CGCAGCTCTGCTCGTGAGACCATCGCTAGAGTCGCCGCCGGTGCTGTCGCTGAAAAGTGG 53 Query 18487 CTC 18489 ||| Sbjct 52 CTC 50 >seq3398 Length=5185 Score = 154 bits (170), Expect = 2e-31 Identities = 185/250 (74%), Gaps = 1/250 (0%) Strand=Plus/Plus Query 868691 GCCTTGGCGTACTCGCCCACGCGCCGCTCGAAAAAGTTGGTCTTGCCCTCGAGCGAGATC 868750 ||||| ||| || || || ||| |||||| |||||||||||||| |||| ||||| Sbjct 980 GCCTTCTGGTAGTCACCGACACGCTTCTCGAAGAAGTTGGTCTTGCCACCGAGGGAGATG 1039 Query 868751 AACTCCATCCACGGGAACGGGTTGGGCGTCTTGTAGTGCTTTTCGCATCCGAGCGACGCG 868810 |||||| | ||| ||||||| | ||||||| ||| ||| ||||| | || Sbjct 1040 TTCTCCATGAAGTCGAAGGGGTTGGTGGCCTTGTAGACCTTCTCGTTGCCGAGGGCGACG 1099 Query 868811 AGCAGGCGGTCGGCGACAAACTCGATGTACTGGCACATGAGGCCGGCGTTCATGCCGATG 868870 || |||||||||||||| |||||||||||||| ||||||| ||||||||||||||| Sbjct 1100 AGGAGGCGGTCGGCGACGAACTCGATGTACTGCTTCATGAGGTCGGCGTTCATGCCGAGC 1159 Query 868871 AGCGCCACCGGCAGCGACTCGCTCACAAACTCTTTCTCGATCTCGACGGCCTCGACGATG 868930 || || || || | |||| ||| ||||| | ||| || |||||| ||| |||| Sbjct 1160 AGGGCGCAGGGGAGGGCCTCGGTCAGGAACTCCTGCTCAATGGTGACGGCATCGGTGATG 1219 Query 868931 ATCTGCCTGG 868940 || | ||||| Sbjct 1220 ATGT-CCTGG 1228 Score = 150 bits (166), Expect = 2e-30 Identities = 213/291 (73%), Gaps = 15/291 (5%) Strand=Plus/Plus Query 869179 ACCTTCGTCGCGACTGATCATTTCGTTGCTAAAGGCGAGGCCGGGCATGAGGCCGCGCTT 869238 ||| ||||| ||| ||| | |||||| ||||| ||||| ||||||||||| ||||| Sbjct 1294 ACCCTCGTCACGAGAGATGAGCTCGTTGGAAAAGGTCAGGCCAGGCATGAGGCCACGCTT 1353 Query 869239 CTTGAGCCAAAAGATGGCGCAGAAACTGC-CCG-AGAAAAAGATGCCCTCGACGGCGGCA 869296 ||||||||| ||||||| | | || || ||| ||| ||||| ||||||||||| ||| Sbjct 1354 CTTGAGCCAGAAGATGGAG--GCAAAGGCACCGCTGAAGAAGATACCCTCGACGGCAGCA 1411 Query 869297 AAGCCGATGAGCCGCTCGGCAAAGGTGTCGAGGCCCTCCTTG---TTGATCCACTTCATC 869353 || ||| ||| |||| |||||| | |||| | |||| | |||||| || Sbjct 1412 AAAGCGACGAGACGCTGAGCAAAG--GACGAG----TTCTTGTCCTGGATCCATCGGATG 1465 Query 869354 GCCCAGTCGGCCTTTTTCCTCACCGACGGCACCGTGTCGATGGCGCGAAAGAGGT-GGTC 869412 |||||||||||||| || | | | || | || || |||||| ||||||| ||| Sbjct 1466 GCCCAGTCGGCCTTCTTGCGGATGCAGGGGATGGTCTCAATGGCGTTGAAGAGGTAGGTT 1525 Query 869413 CTTTTCGGCCGGGTCCTTGACATAGGTGTCGATCAGGAGCGAATAGGTCTC 869463 | || || || ||||||| |||||||| || |||||||| |||||||| Sbjct 1526 C-GTTGAGCAGGCTCCTTGATGTAGGTGTCAATGAGGAGCGAGTAGGTCTC 1575 >seq8513 Length=2088 Score = 129 bits (142), Expect = 7e-24 Identities = 299/448 (67%), Gaps = 17/448 (4%) Strand=Plus/Plus Query 1630065 CTGGTCGACGTAGCGCGCCGTGTCGTTAAAGACGCGGAGCATGGGCACGAGGCCGTTGGA 1630124 |||||||||||| || || |||| ||| ||||| || |||||||| || |||||||| Sbjct 1378 CTGGTCGACGTACCGGGCAGTGTTGTTGAAGACACGAAGCATGGGGGTGACACCGTTGGA 1437 Query 1630125 CTCGCCGTTGGTGCCCGCCACGTAGGCGCCGGCGGCGCGCACCTTGTGCGCGGCAAAGCC 1630184 |||||||| || || | ||| | ||| | ||| || | ||| || | ||| Sbjct 1438 GGTACCGTTGGTACCAGCGATGTAAGAGCCAGTGGCACGGATTCGGTGGACGTTCAGGCC 1497 Query 1630185 GATGCCGCCGGCCGACTTGGAGATGAGCGCGCACTGTTTGAGCGTGTCGTAGATGCCCTC 1630244 ||| || || ||| ||||||||| | || || ||||| || || || || ||||| Sbjct 1498 GATACCACCCGCCATCTTGGAGATCATGGCACAGGTCTTGAGAGTATCATAAATACCCTC 1557 Query 1630245 GATCGAGTCGGCCTTCATGTCCACGAGAAAGCACGACGAGTTTTGCGGGTGCGCCGTGCC 1630304 || ||| | |||||||| || || ||||| || || || || || | || || Sbjct 1558 AATGCTGTCCTCTTTCATGTCGACCAGGAAGCATGAGGACAGCTGAGGCTGGGGAGTACC 1617 Query 1630305 GGCGTTGAAGAGCGTGGGCGTCGCCGCGGTGAACAACTGCCGCGACATGGCGTCGTAGGT 1630364 || |||||||| ||||| | || |||||| || | | |||||| || |||||| Sbjct 1618 AGCATTGAAGAGGGTGGGGGAGGCATGGGTGAAGAATTTGCTCGACATCAGGTTGTAGGT 1677 Query 1630365 GGCGAGCACGCGCGCCAGCGCATCGTCCACGTCGGCAAACCCATAGTGGCCGATGGCGAC 1630424 | || || ||| | | |||||| |||| || ||||| | || Sbjct 1678 CTCCAGGACACGCTCAA---TATCGTC-----------ACCC-CAGATGCCGACAGACAC 1722 Query 1630425 GCGCATGAGCATGTACTGGGGCCGCTCGACGACGACGCCGCGCACCTTGGTCAGGTAGGA 1630484 ||||||| ||||| |||||| ||||| || | ||| | |||| |||||||| Sbjct 1723 ACGCATGATCATGTGCTGGGGACGCTCAACAATCTTGCCATCAATCTTGAGGAGGTAGGA 1782 Query 1630485 CCGGCGCATG-GTCATGAGGCCAAAGTA 1630511 | || || | ||| ||| ||||||||| Sbjct 1783 TC-GCTCAAGAGTCTTGAAGCCAAAGTA 1809 Score = 113 bits (124), Expect = 6e-19 Identities = 288/443 (65%), Gaps = 8/443 (2%) Strand=Plus/Plus Query 1628162 ACTGGACGATCTCGGTGCACAGGTTGG-CCGACGTCGTCGTACCCAGGTTCTGCTGGTTG 1628220 ||| || ||||||||||| || |||| | ||| | || |||||||||| ||||||| Sbjct 939 ACTCGATAATCTCGGTGCAGAGATTGGAGCTACG-GATGGTGCCCAGGTTCTTCTGGTTG 997 Query 1628221 GTGGTCAGGTTGACGGCGTCCTTGTGGAGCATGTAGGGCGCGCCGGTCTCGATCTGCGCC 1628280 | | ||||| | |||||||| ||||||| |||| |||||||||| |||||||| Sbjct 998 CTCTTGCGGTTGCAGTGGTCCTTGTAGAGCATGAAGGGGTTGCCGGTCTCGGTCTGCGCC 1057 Query 1628281 GCGACGATGGCCGACCAGATCTGGCGCGCGGGCACGACAGTCCGCGCGCGGCCCTNNNNN 1628340 ||| |||||| |||||| || | || || | | || | |||| Sbjct 1058 TCGAGGATGGCATACCAGAGCTTCTGGGCCTTCATGGTCTTGCGACCCTTGCCCGCCTTC 1117 Query 1628341 NNNNNNNNNNNNNNNNNNNNNTCAAAGGCCGCGCCGTAGCACTCGTGCAGGCCGGGCGCC 1628400 || || || |||| ||||| ||| ||| ||||| | Sbjct 1118 TCATACTTTTCGTAAAGAGCCTCGAACTCCTCGCCATAGCAGTCGGCCAGACCGGGGCAC 1177 Query 1628401 TCGGACGGACAAAAGAGCGACCAGTCGCCACCGGTCACCGCG---CGGCGCATAAAGAGG 1628457 ||| ||||| | ||| | ||||| ||||| || | || || ||| ||||| Sbjct 1178 TCGTTGGGACACATGAGGGTCCAGT---CACCGTTCTTCTCGACACGCTTCATGAAGAGA 1234 Query 1628458 TCACACGTCCACAGTGCGTAAAAGAGGTCGCGCGCCCGGTTCTCCTCCTTGCCGTGGTTC 1628517 || |||| || || || |||||||| || ||| ||||||||||||||||||| Sbjct 1235 TCGGGAATCCAGAGAGCCAGGAACAGGTCGCGGGCGCGGACCTCCTCCTTGCCGTGGTTC 1294 Query 1628518 TTTTTGAGGTCGAGCCAGTCGACAATGTCGGCGTGCCACGGCTCCAGGTAGCAGGCAAAG 1628577 || ||||| || | || | | || |||||||| ||||| |||||| ||||||| Sbjct 1295 TTGCGCAGGTCAAGGAACTCAAAGACATCTGCGTGCCAGGGCTCAAGGTAGATGGCAAAG 1354 Query 1628578 GCGCCCTTGCGCTTGCCGCCGCC 1628600 || || |||||| ||| || Sbjct 1355 GCACCAGGTCGCTTGTTGCCACC 1377 Score = 91.5 bits (100), Expect = 2e-12 Identities = 160/228 (70%), Gaps = 4/228 (2%) Strand=Plus/Plus Query 1627293 CGTCCACAGGCCGCGCGCCATCA-GGCGCTTGACCAGGTGGCGGTTGACCACGGTAAAGT 1627351 || ||||||||| | | || || || ||||| ||| | ||||||| || || | Sbjct 283 CGACCACAGGCC-CATGTCAACAAGGTCCTTGAGCAGCCAGGGGTTGACGACCTGGAACT 341 Query 1627352 CGCCCGAGAGCACGCGGCGCGTGTAGATGTTGTTGGTGATGACCTCGCACGCCTCGGTGT 1627411 |||| | ||| || |||||| |||||||||| |||| |||| | |||| ||| Sbjct 342 CGCCAGCGAGGACACGGCGCTGGTAGATGTTGGAGGTGTAAGGCTCGAAGCACTCGTTGT 401 Query 1627412 TGCCCAGGATCTGCGACGTCGTGGCCGTGGGCATGAGCGCCACGAGGAGCGAGTTGCGCA 1627471 |||||||||||||||| || |||| || ||||| | || | || || |||||| | Sbjct 402 TGCCCAGGATCTGCGAAGTACTGGCAGTAGGCATAGGGGCAAGCAGCAGACTGTTGCGAA 461 Query 1627472 GGCCGTGCT-GTCGAACTAGCGCGCGCAGCGCGTCCCAGTCCCAGCGG 1627518 |||||||| | || || || | || || |||||||||||| || Sbjct 462 TGCCGTGCTCCTTGACCT-GCTCCCGGAGGTTCTCCCAGTCCCAGAGG 508 >seq2660 Length=6014 Score = 125 bits (138), Expect = 9e-23 Identities = 93/109 (85%), Gaps = 0/109 (0%) Strand=Plus/Plus Query 1592186 GCCGCCAACTACCTCGACATCAAGCCTCTGCTCGATCTTGGGTGCAAGTCTGTGGCCAAC 1592245 ||| ||||||| |||||||||||||| || || ||| | || |||||| | || |||||| Sbjct 2540 GCCTCCAACTATCTCGACATCAAGCCCCTTCTTGATGTCGGCTGCAAGACCGTCGCCAAC 2599 Query 1592246 ATGATCAAGGGCAAGTCGCCCGAGGAGATCCGCAAGACCTTTAACATCA 1592294 ||||||||||||||||| ||||||||||| || ||||| || ||||||| Sbjct 2600 ATGATCAAGGGCAAGTCTCCCGAGGAGATTCGGAAGACTTTCAACATCA 2648 >seq19343 Length=515 Score = 118 bits (130), Expect = 1e-20 Identities = 119/155 (77%), Gaps = 0/155 (0%) Strand=Plus/Minus Query 19047 GACAGCATCGGCGGCACGGTGACGTGCGTGTGTCGCAACGTGCCGGCAGGCCTCGGCGAG 19106 ||||||| ||||||||| || || ||||| || || ||||| | |||||||||||| Sbjct 499 GACAGCACCGGCGGCACCGTCACCTGCGTCATCCGTAATGTGCCCTCTGGCCTCGGCGAG 440 Query 19107 CCGTGCTTTGACAAGATCGAGGCCGCGCTCGCCCACGCCATGCTGTCGATCCCGGCCACC 19166 || ||||| |||||| | |||||| ||||| ||||||||| |||| ||||| ||| | Sbjct 439 CCCTGCTTCGACAAGCTGCAGGCCGTCCTCGCACACGCCATGATGTCCATCCCCGCCGTC 380 Query 19167 AAGGGATTCGAGATTGGCAGCGGGTTTGCGGGTGC 19201 |||| || ||| ||||| ||| ||| ||| || Sbjct 379 AAGGCCTTTGAGTTTGGCTCCGGCTTTCTGGGCGC 345 >seq7023 Length=2475 Score = 116 bits (128), Expect = 5e-20 Identities = 139/189 (74%), Gaps = 0/189 (0%) Strand=Plus/Plus Query 1574046 AAGAGGATCGACCTGCCGCCCGGACGCCACAAGGTGATCATCCTCGACGAGGCCGACTGC 1574105 |||| | || ||||||| |||| ||||||||| || ||||||||||||| || ||| || Sbjct 1262 AAGAAGGTCACCCTGCCGGCCGGCCGCCACAAGCTGGTCATCCTCGACGAAGCTGACAGC 1321 Query 1574106 CTCACGTCGGCGGCCCAGCAGGCCCTGCGGTCCACCATGGAAAAGCACACCAACACGACG 1574165 | || |||| |||||||| || || || |||||||||| || |||||||||| Sbjct 1322 ATGACCTCGGGCGCCCAGCAAGCACTCCGACGAACCATGGAAATCTACTCCAACACGACC 1381 Query 1574166 CGCTTTGCCCTGGCGTGCAACACGTCGTCGATGGTCATCGAGGCCCTCCAAAGTCGCTGC 1574225 | || ||| | || |||||| ||| | | |||| ||| |||| ||| || ||| Sbjct 1382 AGATTCGCCTTTGCCTGCAACCAGTCCAACAAGATCATTGAGCCCCTACAATCGCGATGC 1441 Query 1574226 GCCATTCTG 1574234 ||||| ||| Sbjct 1442 GCCATCCTG 1450 >seq8800 Length=1347 Score = 100 bits (110), Expect = 3e-15 Identities = 135/188 (72%), Gaps = 0/188 (0%) Strand=Plus/Plus Query 18100 GGCGAGTCGCACGGGGCGGGCGTCGGCTGCATCATCGACGGCGTGCCGCCGTGCATGCCA 18159 |||||||| ||||| | ||| |||||||||||| | || || ||| | Sbjct 1153 GGCGAGTCCCACGGCAAGTCAGTCTCGTGCATCATCGACAACTGCCCCCCCAACATTGCC 1212 Query 18160 CTGGCCGAGGCCGACATCCAGCCTCAGTTGGATCGGCGCCGACCGGGCCAGGGCGCACTT 18219 || ||||||||||||| ||||| ||| | | || ||||| ||||||||| || | Sbjct 1213 CTCACCGAGGCCGACATTCAGCCCCAGCTCAACCGCCGCCGCCCGGGCCAGTCGGCCATC 1272 Query 18220 TCCACGCCGCGCAACGAGCCCGATCGCGTCATCATCCAGTCGGGCACGGAGAACGGCCTC 18279 | ||||| || ||||| ||||| |||| |||||| |||||||| ||||||||| || Sbjct 1273 ACGACGCCCCGGAACGAAAAGGATCGTGTCACCATCCACTCGGGCACCGAGAACGGCGTC 1332 Query 18280 ACGCTCGG 18287 || | ||| Sbjct 1333 ACCCCCGG 1340 >seq489 Length=14457 Score = 93.3 bits (102), Expect = 5e-13 Identities = 257/386 (67%), Gaps = 16/386 (4%) Strand=Plus/Minus Query 511949 GGCGTGGACGCCTCGCGCAGTCACACCAACGACATCAACCGCGTGGCCGCCGTGCTGGGC 512008 ||||| ||||| ||||| | ||||||||||| | | |||| || ||| | || Sbjct 1054 GGCGTCGACGCTTCGCGGACATACACCAACGACCTGTGGCAAGTGGTCGAGGTGTTTGGT 995 Query 512009 ATCGAGGCCGCCGTGGCCGTGCTCTTTTCC--GAGATCAAGGCCGTCATCTCCTTTGACG 512066 |||||||| ||| | || ||||| || ||| | | ||| | | ||||||| Sbjct 994 ATCGAGGCAGCCC-GTTCG-GCTCTGGTCAAGGAGTTGACCAACGTGCTGGCGTTTGACG 937 Query 512067 GCACCTACGTCAACGACCGCCACTTTGCGCTGGCCACCGACACCATGTGCTGCCGCGGAT 512126 | ||||||||||| | || ||| |||||||| || || |||| | | | |||| Sbjct 936 GTTCCTACGTCAACCATCGTCACATTGCGCTGCTGACAGATGTCATGACGTACAGAGGAT 877 Query 512127 CGGTGGTGGCCGTCACGCGCCACGGCTTCAACCGCGCCGACCACGGCTTC-CTGTCGCGG 512185 | | ||| || || || ||||| ||||||| || || ||| | | | ||| ||| Sbjct 876 CCATCTCGGCTGTGACCCGACACGGTATCAACCGTGCTGA-CACTGGTGCTCTGATGCGT 818 Query 512186 GCCTCTTTCGAAGAGACCGTCGACATCCTCTTTGACGCGGCGGCCTTTGCCGAGACCGAC 512245 |||||||| ||||| ||||| ||| | | || || || || | || | || | | Sbjct 817 TGTTCTTTCGAGGAGACGGTCGAGATCTTGCTCGAGGCTGCCGCGTCTG--GTGAGCTAG 760 Query 512246 AAGATCACCGACG--GCTCGGTGACCGAGCCCATCATCCTGGGCCAGACGGCGCCCATCG 512303 | || |||| | ||||| || || |||| |||||||||| |||||| || | Sbjct 759 ATGACTGCCGAGGTATCTCGGAGAACG------TCATGCTGGGCCAGATGGCGCCAATGG 706 Query 512304 GCACGGCCATCTCGGACGTGCTCGTG 512329 |||||| | || || |||||| || Sbjct 705 GCACGGGTAACTTTGATGTGCTCCTG 680 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 6105253435649343