Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Fusarium_20tucumaniae_20[genbank_20GCA_5F001680595.1_202016-07-06] 22,979 sequences; 49,676,379 total letters Query= NC_022098.1 Length=2473870 Score E Sequences producing significant alignments: (Bits) Value seq3398 183 5e-40 seq7023 138 2e-26 seq2660 125 1e-22 seq10397 113 7e-19 seq8513 102 1e-15 seq489 91.5 2e-12 >seq3398 Length=5185 Score = 183 bits (202), Expect = 5e-40 Identities = 242/331 (73%), Gaps = 11/331 (3%) Strand=Plus/Plus Query 794340 ACCTTCGTCGCGACTGATCAATTCGTTGCTAAAGCAGAGGCCGGGCATGAGGCCGCGCTT 794399 ||| ||||| ||| ||| | |||||| |||| ||||| ||||||||||| ||||| Sbjct 1294 ACCCTCGTCACGAGAGATGAGCTCGTTGGAAAAGGTCAGGCCAGGCATGAGGCCACGCTT 1353 Query 794400 CTTGAGCCAAAAGATGG---CACAGAAACTGCCCGAGAAAAAGATGCCCTCGACGGCGGC 794456 ||||||||| ||||||| || || || || ||| ||||| ||||||||||| || Sbjct 1354 CTTGAGCCAGAAGATGGAGGCAAAGGCACCGCT---GAAGAAGATACCCTCGACGGCAGC 1410 Query 794457 AAAGCCGACGAGCCGCTCGGCAAAAGTGTCCAGGCCCTCTTTGTTGATCCACTTCATCGC 794516 ||| ||||||| |||| ||||| | | | || | | |||||| || || Sbjct 1411 AAAAGCGACGAGACGCTGAGCAAAGGA---CGAGTTCTTGTCCTGGATCCATCGGATGGC 1467 Query 794517 CCACTCTGCCTTTTTCCTCACCGAGGGCACCGTGTCGATGGCGCGAAAGAGGT-GGTCCT 794575 ||| || ||||| || | | |||| | || || |||||| ||||||| ||| | Sbjct 1468 CCAGTCGGCCTTCTTGCGGATGCAGGGGATGGTCTCAATGGCGTTGAAGAGGTAGGTTCG 1527 Query 794576 TCTCGACCGGGTCCTTGACGTAGGTGTCGATGAGGAGCGAGTAGGTCTCTGAGTGGATGT 794635 | | | || ||||||| ||||||||| |||||||||||||||||||| |||||||||| Sbjct 1528 TTGAG-CAGGCTCCTTGATGTAGGTGTCAATGAGGAGCGAGTAGGTCTCGGAGTGGATGT 1586 Query 794636 TTTCGATGGCGATCTGGAAGCCATAAAAGCA 794666 | || || |||||||||||| || ||||| Sbjct 1587 TCTCCATCATGATCTGGAAGCCGTAGAAGCA 1617 Score = 147 bits (162), Expect = 3e-29 Identities = 190/259 (73%), Gaps = 5/259 (2%) Strand=Plus/Plus Query 793892 GACGCCCGCCTTGGCATACTCGCCCACGCGCCGCTCGAAAAAGTTGGTCTTGCCCTCGAG 793951 ||| || ||||| || || || || ||| |||||| |||||||||||||| |||| Sbjct 973 GACACCAGCCTTCTGGTAGTCACCGACACGCTTCTCGAAGAAGTTGGTCTTGCCACCGAG 1032 Query 793952 CGAGATCAACTCCATCCACGGGAACGGGTTGGCCGTCAGGTAGTGCTTCTCGCACCCGA- 794010 ||||| |||||| | ||| ||||||| | | |||| ||||||| |||| Sbjct 1033 GGAGATGTTCTCCATGAAGTCGAAGGGGTTGGTGGCCTTGTAGACCTTCTCGTTGCCGAG 1092 Query 794011 -GCGACGCAAGCAGGCGGTCGGCGACGAATTCAATGTACTGGCACATGAGGGCGGCGTTC 794069 |||||| || ||||||||||||||||| || |||||||| ||||||| |||||||| Sbjct 1093 GGCGACG--AGGAGGCGGTCGGCGACGAACTCGATGTACTGCTTCATGAGGTCGGCGTTC 1150 Query 794070 ATGCCGATGAGCGCCACGGGCAGCGACTCGCTGACAAACTCTTTCTCGATCTCGACGGCC 794129 ||||||| || || ||| || | |||| | | ||||| | ||| || |||||| Sbjct 1151 ATGCCGAGCAGGGCGCAGGGGAGGGCCTCGGTCAGGAACTCCTGCTCAATGGTGACGGCA 1210 Query 794130 TCGATGATGATCTGCCTGG 794148 ||| ||||||| | ||||| Sbjct 1211 TCGGTGATGATGT-CCTGG 1228 >seq7023 Length=2475 Score = 138 bits (152), Expect = 2e-26 Identities = 187/260 (72%), Gaps = 2/260 (1%) Strand=Plus/Plus Query 2019183 AAAAGAA--TCGACCTGCCGCCCGGCCGCCACAAGGTGATCATCCTCGATGAGGCCGACT 2019240 ||||||| || ||||||| |||||||||||||| || |||||||||| || || ||| Sbjct 1260 AAAAGAAGGTCACCCTGCCGGCCGGCCGCCACAAGCTGGTCATCCTCGACGAAGCTGACA 1319 Query 2019241 GCCTTACGTCGGCGGCCCAGCAGGCCCTCCGATCGACCATGGAAAAGTACACCAACACGA 2019300 || | || |||| |||||||| || |||||| |||||||||| ||| ||||||||| Sbjct 1320 GCATGACCTCGGGCGCCCAGCAAGCACTCCGACGAACCATGGAAATCTACTCCAACACGA 1379 Query 2019301 CGCGGTTTGCGCTGGCCTGCAACACGTCGTCGATGGTCATCGAAGCCCTCCAGAGCCGTT 2019360 | | || || | ||||||||| ||| | | |||| || |||| || || | Sbjct 1380 CCAGATTCGCCTTTGCCTGCAACCAGTCCAACAAGATCATTGAGCCCCTACAATCGCGAT 1439 Query 2019361 GCGCCATCTTGCGCTTTGCGCGCCTCACCGACGCCCAGATCGCCGCGCGTCTGCGCGAGA 2019420 |||||||| || | | || | || || |||||| ||| ||| ||| ||| Sbjct 1440 GCGCCATCCTGAGATACGCCAAGTTGACGGATGCCCAGGTCGTGAAGCGACTGATGCAGA 1499 Query 2019421 TTATCGACGCCGAAAAGGTC 2019440 ||||||| || ||||||||| Sbjct 1500 TTATCGAGGCGGAAAAGGTC 1519 >seq2660 Length=6014 Score = 125 bits (138), Expect = 1e-22 Identities = 93/109 (85%), Gaps = 0/109 (0%) Strand=Plus/Plus Query 2035647 GCCGCCAACTACCTCGACATCAAGCCCCTCCTCGATTTGGGGTGCAAGACCGTGGCCAAC 2035706 ||| ||||||| ||||||||||||||||| || ||| | || ||||||||||| |||||| Sbjct 2540 GCCTCCAACTATCTCGACATCAAGCCCCTTCTTGATGTCGGCTGCAAGACCGTCGCCAAC 2599 Query 2035707 CTTATCAAGGGCAAGTCGCCCGAGGACATCCGCAAGACCTTTAACATCA 2035755 | |||||||||||||| |||||||| || || ||||| || ||||||| Sbjct 2600 ATGATCAAGGGCAAGTCTCCCGAGGAGATTCGGAAGACTTTCAACATCA 2648 >seq10397 Length=1477 Score = 113 bits (124), Expect = 7e-19 Identities = 80/92 (87%), Gaps = 0/92 (0%) Strand=Plus/Minus Query 1485471 GTACTTGGTGACGGCCTTGGTACCCTCTGAGACGGCGTGCCTGGCCAGTTCGCCGCGCAT 1485530 ||||||||||||||||||||||||||| |||||||||||| |||| || || ||| | | Sbjct 878 GTACTTGGTGACGGCCTTGGTACCCTCAGAGACGGCGTGCTTGGCAAGCTCACCGGGGAG 819 Query 1485531 GATCAGGCGCACGGCGGTCTGGATCTCGCGGG 1485562 ||||||||| || | |||||||||||| |||| Sbjct 818 GATCAGGCGGACAGAGGTCTGGATCTCTCGGG 787 >seq8513 Length=2088 Score = 102 bits (112), Expect = 1e-15 Identities = 336/514 (65%), Gaps = 14/514 (3%) Strand=Plus/Plus Query 2069278 GCGGCAGGCCGGGTGCGCAGATAGTACATGCCGGTCTTGAGGCCGCGACGCCACGCGTAG 2069337 ||||||| | | || ||||| ||||||||||| ||||| |||||| | ||| || Sbjct 5 GCGGCAGCCTGCGTTCGCAGGTAGTACATGCCCGTCTTCAGGCCGAGCTTCCAGCCGGCA 64 Query 2069338 GCGTGCATCGACGTGATGGACTCGGCATTCGGGACGGCA--CA-GTAGAGGTTGAGCGAC 2069394 |||||| ||||| || | | | | | | | || || || |||||| ||| Sbjct 65 AAGTGCATGCTGGTGAT---CTTGCCCATGGTGGGGTCCTTCATGTGGATGTTGAGGGAC 121 Query 2069395 TGGCTCTGGTCGACATAGGGCGCGCGGTCGGCCGCCATGTCGATGGTCACGCGGTTGGAC 2069454 ||| ||| || | ||| | |||||||| ||||| | | | | ||| | || Sbjct 122 TGGGACTGATCAATGAAGGCACCTCGGTCGGCAGCCATCTGAACGACCTGGCGCTGCGAA 181 Query 2069455 ACCTCCCACACGGTCTTGAACAGGGCCTTGAGATGCGGCGGCACCTCGTCGTCATCAAAG 2069514 | |||||| ||||||||| | |||||||||| | |||||| | | | || | Sbjct 182 ATCTCCCAGACGGTCTTGTAGAGGGCCTTGACCT-CGGCGGGGA-TGTTGGGGAT----G 235 Query 2069515 CCCTGCACCGAGCCCTGCGCTGCGATGAGGCGGTCGCGAAAGTCGGGCGTCCACAGGCCG 2069574 ||| | || || | | | || |||| |||| | | | || ||||||||| Sbjct 236 TTCTGGATGGAACCGTTCTCGGCAATGATTCGGTTTTTCATGGCATCCGACCACAGGCC- 294 Query 2069575 CGCGCCATCATGCGC-TCGACCAGGTGGCGGTTGACCACGGTAAAGTCGCCCGAGAGCAC 2069633 | | || || | | | || ||| | ||||||| || || ||||| | ||| || Sbjct 295 CATGTCAACAAGGTCCTTGAGCAGCCAGGGGTTGACGACCTGGAACTCGCCAGCGAGGAC 354 Query 2069634 GCGGCGCGTGTAGATGTTGCTCGTGATGACCTCGCACGCCTCGGTGTTGCCCAGGATCTG 2069693 |||||| |||||||||| ||| |||| | |||| |||||||||||||||| Sbjct 355 ACGGCGCTGGTAGATGTTGGAGGTGTAAGGCTCGAAGCACTCGTTGTTGCCCAGGATCTG 414 Query 2069694 CGACGTCGTGGCCGTGGGCATGAGCGCCACGAGCAGCGAGTTGCGCAGGCCGTACTGTCG 2069753 ||| || |||| || ||||| | || | ||||| |||||| | ||||| || Sbjct 415 CGAAGTACTGGCAGTAGGCATAGGGGCAAGCAGCAGACTGTTGCGAATGCCGTGCTCCTT 474 Query 2069754 CACCAGCGCCCGCAGGGCGTCCCAGTCCCAGCGG 2069787 ||| || |||| ||| |||||||||||| || Sbjct 475 GACCTGCTCCCGGAGGTTCTCCCAGTCCCAGAGG 508 Score = 100 bits (110), Expect = 5e-15 Identities = 177/258 (69%), Gaps = 0/258 (0%) Strand=Plus/Plus Query 2073540 CTGGTCGACATAGCGCGCCGTGTCGTTAAAGACGCGGAGCATGGGCACAAGGCCGTTGGA 2073599 ||||||||| || || || |||| ||| ||||| || |||||||| | |||||||| Sbjct 1378 CTGGTCGACGTACCGGGCAGTGTTGTTGAAGACACGAAGCATGGGGGTGACACCGTTGGA 1437 Query 2073600 CTCGCCGTTGGTGCCCGCCACGTAGGCGCCCGAGGCGCGCACCTTGTGCGCGGCAAAGCC 2073659 |||||||| || || | ||| | ||| | ||| || | ||| || | ||| Sbjct 1438 GGTACCGTTGGTACCAGCGATGTAAGAGCCAGTGGCACGGATTCGGTGGACGTTCAGGCC 1497 Query 2073660 GATGCCGCCGGCCGCCTTGGAGATGAGCGCGCACTTTTTCAGCGTCTCGTAGATGCCCTC 2073719 ||| || || ||| ||||||||| | || || | || || || || || || ||||| Sbjct 1498 GATACCACCCGCCATCTTGGAGATCATGGCACAGGTCTTGAGAGTATCATAAATACCCTC 1557 Query 2073720 GATCGAGTCGGCCTTCATGTCCAACAGAAAGCACGACGAGTTTTGCGGGCGCGCCGTGCC 2073779 || ||| | |||||||| | ||| ||||| || || || || | | || || Sbjct 1558 AATGCTGTCCTCTTTCATGTCGACCAGGAAGCATGAGGACAGCTGAGGCTGGGGAGTACC 1617 Query 2073780 GGCATTGAAGAGCGTGGG 2073797 ||||||||||| ||||| Sbjct 1618 AGCATTGAAGAGGGTGGG 1635 Score = 96.9 bits (106), Expect = 5e-14 Identities = 281/433 (65%), Gaps = 8/433 (2%) Strand=Plus/Plus Query 2071584 CTCGGTGCACAGGTTGGCCGACATCG-TGGTGCCCAGGTTCTGCTGGTTGCTGGTCAGGT 2071642 ||||||||| || |||| | | | ||||||||||||||| ||||||||| | ||| Sbjct 949 CTCGGTGCAGAGATTGGA-GCTACGGATGGTGCCCAGGTTCTTCTGGTTGCTCTTGCGGT 1007 Query 2071643 TGACGGCGTCCTTGTGCAGCATGTAGGGCGCACCCGTCTCGATCTGCGCCGTGACGATGG 2071702 || | |||||||| |||||| |||| || |||||| |||||||| || ||||| Sbjct 1008 TGCAGTGGTCCTTGTAGAGCATGAAGGGGTTGCCGGTCTCGGTCTGCGCCTCGAGGATGG 1067 Query 2071703 CCGACCAAATTTGGCGCGCGGGCACCGAGGTCCT-CGCGCG--GCCCTNNNNNNNNNNNN 2071759 | |||| | | | || || |||| | || | |||| Sbjct 1068 CATACCAGAGCTTCTGGGCCTTCAT---GGTCTTGCGACCCTTGCCCGCCTTCTCATACT 1124 Query 2071760 NNNNNNAGAGGGCGTCAAAGGCGGCGCCGTGGCACTCGTGCAGGCCGGGCGCCTCGGACG 2071819 | || || || || | |||| | ||| ||| ||| ||||| |||| | Sbjct 1125 TTTCGTAAAGAGCCTCGAACTCCTCGCCATAGCAGTCGGCCAGACCGGGGCACTCGTTGG 1184 Query 2071820 GGCAAAAGAGCGACCAGTCGCCGCCAGTCACCACGCGGCGCATAAACAGGTCGCACGTCC 2071879 | || | ||| | |||||| ||| || | || || ||| || || ||| ||| Sbjct 1185 GACACATGAGGGTCCAGTCACCGTTCTTCTCGACACGCTTCATGAAGAGATCGGGAATCC 1244 Query 2071880 ACAGGCCGTAAAAGAGATCGCGCGCCCGGTTCTCCTCCTTGCCGTGGTTCTTTTTCAGGT 2071939 | || | || || ||||| || ||| ||||||||||||||||||||| ||||| Sbjct 1245 AGAGAGCCAGGAACAGGTCGCGGGCGCGGACCTCCTCCTTGCCGTGGTTCTTGCGCAGGT 1304 Query 2071940 CGAGCCAGTCGACGAGGTCGGCGTGCCACGGCTCCAGGTAGCAGGCAAAGGCGCCCTTGC 2071999 | || | || | || || |||||||| ||||| |||||| ||||||||| || | Sbjct 1305 CAAGGAACTCAAAGACATCTGCGTGCCAGGGCTCAAGGTAGATGGCAAAGGCACCAGGTC 1364 Query 2072000 GCTTGCCGCCGCC 2072012 ||||| ||| || Sbjct 1365 GCTTGTTGCCACC 1377 >seq489 Length=14457 Score = 91.5 bits (100), Expect = 2e-12 Identities = 83/105 (79%), Gaps = 0/105 (0%) Strand=Plus/Minus Query 429633 ACCTTCCGGCTCAACCTGGCCGTGACGGGCACCTACAACGCCGACTTTGACGGCGACGAG 429692 |||||||| || |||||| |||| || ||||||||||||| || || || |||||| Sbjct 3637 ACCTTCCGTCTGAACCTGTCCGTCACATCTCCCTACAACGCCGATTTCGATGGTGACGAG 3578 Query 429693 ATGAACCTGCACGTGCCCCAGTCGGAGATGGCACGCGCCGAAGTC 429737 |||||||||||||| |||||| ||| | | ||||| |||||| Sbjct 3577 ATGAACCTGCACGTTCCCCAGAGCGAGGAGACTCGCGCTGAAGTC 3533 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 7913802018962781