Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Fusarium_20tucumaniae_20[genbank_20GCA_5F001680595.1_202016-07-06] 22,979 sequences; 49,676,379 total letters Query= NC_028636.1 Length=135952 Score E Sequences producing significant alignments: (Bits) Value seq3152 134 1e-26 >seq3152 Length=5241 Score = 134 bits (148), Expect = 1e-26 Identities = 171/232 (74%), Gaps = 4/232 (2%) Strand=Plus/Minus Query 26988 ATGCAGATATTTGTAAAAACTCTGACCGGCAAGTCTATTACTCTTGAAGTGGAACCGTCC 27047 |||||||| || || || || || ||||| ||| | || || ||||| |||||| ||||| Sbjct 4212 ATGCAGATCTTCGTCAAGACCCTCACCGGAAAGACCATCACCCTTGAGGTGGAATCGTCC 4153 Query 27048 GACTCGATTGAGATGGTCAAACAAAAAATTCAAGACAAAGAAGGCATACCACCCGATCAA 27107 ||| | ||||| | || ||| || || || ||||| |||||||| || || |||||| Sbjct 4152 GACACCATTGACAATGTGAAATCGAAGATCCAGGACAAGGAAGGCATTCCTCCTGATCAA 4093 Query 27108 CAGCGTTTAATATACGCCGGCAAACAATTGGAAGACAGTTCGACCGTTTC--CGATTACA 27165 ||||| | || | |||||||| || | || ||| | ||| | | || ||| |||| Sbjct 4092 CAGCGACTCATCTTTGCCGGCAAGCAGCTCGAGGACGGC-CGAAC-TCTCAGCGACTACA 4035 Query 27166 ACATTCAAAAGGAGTCGACCTTACATTTGGTTTTGCGTTTGCGGGGTGGCAT 27217 |||| || ||||||||||| | || ||||| | ||| |||| ||||| || Sbjct 4034 ACATCCAGAAGGAGTCGACTCTGCACCTGGTTCTTCGTCTGCGCGGTGGTAT 3983 Score = 116 bits (128), Expect = 3e-21 Identities = 162/227 (71%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 26988 ATGCAGATATTTGTAAAAACTCTGACCGGCAAGTCTATTACTCTTGAAGTGGAACCGTCC 27047 |||||||| ||||| || ||||| || || ||| | || ||||| || ||||| || | Sbjct 3984 ATGCAGATCTTTGTCAAGACTCTCACTGGAAAGACCATCACTCTGGAGGTGGAGTCGAGC 3925 Query 27048 GACTCGATTGAGATGGTCAAACAAAAAATTCAAGACAAAGAAGGCATACCACCCGATCAA 27107 || | ||||| | || || || ||||| ||||| || ||||| || || || || Sbjct 3924 GATACCATTGACAACGTGAAGTCCAAGATTCAGGACAAGGAGGGCATCCCCCCTGACCAG 3865 Query 27108 CAGCGTTTAATATACGCCGGCAAACAATTGGAAGACAGTTCGACCGTTTCCGATTACAAC 27167 ||||| | || | || || || || |||||||| || ||| | ||||| |||||| Sbjct 3864 CAGCGACTTATCTTTGCTGGTAAGCAGCTGGAAGACGGTCGTACCCTGTCCGACTACAAC 3805 Query 27168 ATTCAAAAGGAGTCGACCTTACATTTGGTTTTGCGTTTGCGGGGTGG 27214 || || |||||||||||| | ||| | ||| | ||| | || || || Sbjct 3804 ATCCAGAAGGAGTCGACCCTTCATCTTGTTCTCCGTCTCCGTGGCGG 3758 Score = 100 bits (110), Expect = 2e-16 Identities = 147/208 (71%), Gaps = 0/208 (0%) Strand=Plus/Minus Query 27010 TGACCGGCAAGTCTATTACTCTTGAAGTGGAACCGTCCGACTCGATTGAGATGGTCAAAC 27069 |||| |||||| | ||||| || || || || | || || | || || | ||||| Sbjct 4693 TGACGGGCAAGACCATTACCCTCGAGGTCGAGTCCTCGGATACCATCGACAATGTCAAGT 4634 Query 27070 AAAAAATTCAAGACAAAGAAGGCATACCACCCGATCAACAGCGTTTAATATACGCCGGCA 27129 || ||||| ||||| || ||||| || ||||| || |||||| | || | |||||||| Sbjct 4633 CGAAGATTCAGGACAAGGAGGGCATCCCCCCCGACCAGCAGCGTCTGATTTTCGCCGGCA 4574 Query 27130 AACAATTGGAAGACAGTTCGACCGTTTCCGATTACAACATTCAAAAGGAGTCGACCTTAC 27189 | || | || || | ||| | |||||||||||||| || |||||||||||| | | Sbjct 4573 AGCAGCTTGAGGATGGCCGCACCCTCTCCGATTACAACATCCAGAAGGAGTCGACCCTCC 4514 Query 27190 ATTTGGTTTTGCGTTTGCGGGGTGGCAT 27217 | | || | || | || |||||||| Sbjct 4513 ACCTCGTCCTCCGCCTTCGTGGTGGCAT 4486 Score = 82.4 bits (90), Expect = 7e-11 Identities = 129/185 (70%), Gaps = 0/185 (0%) Strand=Plus/Minus Query 27000 GTAAAAACTCTGACCGGCAAGTCTATTACTCTTGAAGTGGAACCGTCCGACTCGATTGAG 27059 || || || || || || ||| |||| || || || ||||| | |||||| |||| || Sbjct 4428 GTCAAGACCCTCACTGGTAAGACTATCACCCTCGAGGTGGAGTCTTCCGACACGATCGAC 4369 Query 27060 ATGGTCAAACAAAAAATTCAAGACAAAGAAGGCATACCACCCGATCAACAGCGTTTAATA 27119 | ||||| || || ||||| || || || || || || || || ||||| | || Sbjct 4368 AACGTCAAGTCGAAGATCCAAGATAAGGAGGGTATTCCTCCTGACCAGCAGCGCCTGATT 4309 Query 27120 TACGCCGGCAAACAATTGGAAGACAGTTCGACCGTTTCCGATTACAACATTCAAAAGGAG 27179 | ||||||||| || | || || | ||| | |||| ||||||||||| |||||| Sbjct 4308 TTCGCCGGCAAGCAGCTTGAGGATGGCCGCACCCTCGCCGACTACAACATTCAGAAGGAG 4249 Query 27180 TCGAC 27184 || || Sbjct 4248 TCAAC 4244 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 434793475126080