Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Fusarium_20tucumaniae_20[genbank_20GCA_5F001680595.1_202016-07-06] 22,979 sequences; 49,676,379 total letters Query= NC_030230.1 Length=372707 Score E Sequences producing significant alignments: (Bits) Value seq3152 131 4e-25 seq2302 127 5e-24 seq1887 125 2e-23 >seq3152 Length=5241 Score = 131 bits (144), Expect = 4e-25 Identities = 156/212 (74%), Gaps = 0/212 (0%) Strand=Plus/Plus Query 225502 AGGACAAGGTGGAGAGTGGATTCTTTTTGGACATTGTAATCGGCCAAAGTTCTCCCATCT 225561 || || ||||| ||||| || || || |||| ||||| ||| | ||||| || || Sbjct 4001 AGAACCAGGTGCAGAGTCGACTCCTTCTGGATGTTGTAGTCGCTGAGAGTTCGGCCGTCC 4060 Query 225562 TCTAGCTGCTTCCCAGCGAAGATAAGTCGTTGTTGGTCGGGCGGAATACCTTCCTTGTCT 225621 || |||||||| || || ||||| ||||| ||||| || || ||||| ||||||||||| Sbjct 4061 TCGAGCTGCTTGCCGGCAAAGATGAGTCGCTGTTGATCAGGAGGAATGCCTTCCTTGTCC 4120 Query 225622 TGGATCTTTTGCTTCACAGCTTCGATGGTGTCTGAGGTTTCCACGTCTAACGTGATCGTC 225681 |||||||| |||||| || |||||||| || | |||||| || | ||||| ||| Sbjct 4121 TGGATCTTCGATTTCACATTGTCAATGGTGTCGGACGATTCCACCTCAAGGGTGATGGTC 4180 Query 225682 TTGCCCGTCAAAGTTTTTATGAACACTTGCAT 225713 || || || | || || | ||| | ||||| Sbjct 4181 TTTCCGGTGAGGGTCTTGACGAAGATCTGCAT 4212 Score = 131 bits (144), Expect = 4e-25 Identities = 149/200 (75%), Gaps = 0/200 (0%) Strand=Plus/Plus Query 225492 ACGAAGTCTCAGGACAAGGTGGAGAGTGGATTCTTTTTGGACATTGTAATCGGCCAAAGT 225551 |||||| | ||||| |||||||| || || || || |||| |||||||||| | || Sbjct 4494 ACGAAGGCGGAGGACGAGGTGGAGGGTCGACTCCTTCTGGATGTTGTAATCGGAGAGGGT 4553 Query 225552 TCTCCCATCTTCTAGCTGCTTCCCAGCGAAGATAAGTCGTTGTTGGTCGGGCGGAATACC 225611 | ||||| || |||||||| || ||||| || || || || |||||||| || || || Sbjct 4554 GCGGCCATCCTCAAGCTGCTTGCCGGCGAAAATCAGACGCTGCTGGTCGGGGGGGATGCC 4613 Query 225612 TTCCTTGTCTTGGATCTTTTGCTTCACAGCTTCGATGGTGTCTGAGGTTTCCACGTCTAA 225671 |||||||| || ||||| ||| ||| |||||||| || |||| || || || | Sbjct 4614 CTCCTTGTCCTGAATCTTCGACTTGACATTGTCGATGGTATCCGAGGACTCGACCTCGAG 4673 Query 225672 CGTGATCGTCTTGCCCGTCA 225691 || || ||||||||||||| Sbjct 4674 GGTAATGGTCTTGCCCGTCA 4693 Score = 118 bits (130), Expect = 3e-21 Identities = 139/188 (74%), Gaps = 0/188 (0%) Strand=Plus/Plus Query 225502 AGGACAAGGTGGAGAGTGGATTCTTTTTGGACATTGTAATCGGCCAAAGTTCTCCCATCT 225561 ||||| |||||||| || || || || || | ||||| ||||| | || | ||||| Sbjct 4229 AGGACGAGGTGGAGTGTTGACTCCTTCTGAATGTTGTAGTCGGCGAGGGTGCGGCCATCC 4288 Query 225562 TCTAGCTGCTTCCCAGCGAAGATAAGTCGTTGTTGGTCGGGCGGAATACCTTCCTTGTCT 225621 || |||||||| || ||||| || || || || ||||| || |||||||| ||||| ||| Sbjct 4289 TCAAGCTGCTTGCCGGCGAAAATCAGGCGCTGCTGGTCAGGAGGAATACCCTCCTTATCT 4348 Query 225622 TGGATCTTTTGCTTCACAGCTTCGATGGTGTCTGAGGTTTCCACGTCTAACGTGATCGTC 225681 |||||||| ||| || ||||| ||||| || | ||||| || | ||||| ||| Sbjct 4349 TGGATCTTCGACTTGACGTTGTCGATCGTGTCGGAAGACTCCACCTCGAGGGTGATAGTC 4408 Query 225682 TTGCCCGT 225689 || || || Sbjct 4409 TTACCAGT 4416 Score = 107 bits (118), Expect = 5e-18 Identities = 142/197 (72%), Gaps = 0/197 (0%) Strand=Plus/Plus Query 225502 AGGACAAGGTGGAGAGTGGATTCTTTTTGGACATTGTAATCGGCCAAAGTTCTCCCATCT 225561 || ||||| || || || || || || |||| ||||| |||| || || | || ||| Sbjct 3773 AGAACAAGATGAAGGGTCGACTCCTTCTGGATGTTGTAGTCGGACAGGGTACGACCGTCT 3832 Query 225562 TCTAGCTGCTTCCCAGCGAAGATAAGTCGTTGTTGGTCGGGCGGAATACCTTCCTTGTCT 225621 || |||||||| ||||| ||||||||||| || ||||| || || || || |||||||| Sbjct 3833 TCCAGCTGCTTACCAGCAAAGATAAGTCGCTGCTGGTCAGGGGGGATGCCCTCCTTGTCC 3892 Query 225622 TGGATCTTTTGCTTCACAGCTTCGATGGTGTCTGAGGTTTCCACGTCTAACGTGATCGTC 225681 || ||||| |||||| || ||||| || | ||||| || | ||||| ||| Sbjct 3893 TGAATCTTGGACTTCACGTTGTCAATGGTATCGCTCGACTCCACCTCCAGAGTGATGGTC 3952 Query 225682 TTGCCCGTCAAAGTTTT 225698 || || || | ||| || Sbjct 3953 TTTCCAGTGAGAGTCTT 3969 >seq2302 Length=6171 Score = 127 bits (140), Expect = 5e-24 Identities = 141/188 (75%), Gaps = 0/188 (0%) Strand=Plus/Minus Query 225502 AGGACAAGGTGGAGAGTGGATTCTTTTTGGACATTGTAATCGGCCAAAGTTCTCCCATCT 225561 ||||| |||||||| ||| || || |||| ||||| ||| || || | ||||| Sbjct 887 AGGACCAGGTGGAGGGTGCTCTCCTTCTGGATGTTGTAGTCGCTCAGGGTGCGGCCATCC 828 Query 225562 TCTAGCTGCTTCCCAGCGAAGATAAGTCGTTGTTGGTCGGGCGGAATACCTTCCTTGTCT 225621 || |||||||| ||||| ||||| ||||| || |||||||| || || || |||||||| Sbjct 827 TCGAGCTGCTTGCCAGCAAAGATGAGTCGCTGCTGGTCGGGGGGGATGCCCTCCTTGTCC 768 Query 225622 TGGATCTTTTGCTTCACAGCTTCGATGGTGTCTGAGGTTTCCACGTCTAACGTGATCGTC 225681 |||||||| ||| || ||||||||||| || | ||||| || | ||||| ||| Sbjct 767 TGGATCTTGGACTTGACGTTGTCGATGGTGTCGGAAGACTCCACCTCGAGGGTGATTGTC 708 Query 225682 TTGCCCGT 225689 || ||||| Sbjct 707 TTCCCCGT 700 >seq1887 Length=5954 Score = 125 bits (138), Expect = 2e-23 Identities = 135/179 (75%), Gaps = 0/179 (0%) Strand=Plus/Minus Query 225526 TTTTGGACATTGTAATCGGCCAAAGTTCTCCCATCTTCTAGCTGCTTCCCAGCGAAGATA 225585 || |||| ||||| |||| | |||| ||||| || |||||||| ||||||||||| Sbjct 4639 TTCTGGATGTTGTAGTCGGAAAGGGTTCGGCCATCCTCCAGCTGCTTGCCAGCGAAGATC 4580 Query 225586 AGTCGTTGTTGGTCGGGCGGAATACCTTCCTTGTCTTGGATCTTTTGCTTCACAGCTTCG 225645 ||||| || ||||| || || || || |||||||| |||||||| ||| ||| || Sbjct 4579 AGTCGCTGCTGGTCCGGGGGGATGCCCTCCTTGTCCTGGATCTTGGACTTGACATTGTCA 4520 Query 225646 ATGGTGTCTGAGGTTTCCACGTCTAACGTGATCGTCTTGCCCGTCAAAGTTTTTATGAA 225704 |||||||| |||| || || || | ||||| ||||||||||||| || || | ||| Sbjct 4519 ATGGTGTCCGAGGACTCGACCTCGAGGGTGATGGTCTTGCCCGTCAGGGTCTTCACGAA 4461 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1192180096827426