Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Fusarium_20tucumaniae_20[genbank_20GCA_5F001680595.1_202016-07-06] 22,979 sequences; 49,676,379 total letters Query= NC_030394.2 Length=126965 Score E Sequences producing significant alignments: (Bits) Value seq5378 129 5e-25 seq2233 87.8 1e-12 >seq5378 Length=3710 Score = 129 bits (142), Expect = 5e-25 Identities = 205/290 (71%), Gaps = 7/290 (2%) Strand=Plus/Minus Query 29530 GTGAGGGTCGTAGCCCTCCAGGGAGAAATCCTCTGCCTTAAAGTCGTCCAGGCTCTCCAC 29589 ||||||||| ||||||| | |||||||| ||||| | |||| | ||| ||| | Sbjct 2690 GTGAGGGTCATAGCCCTTGATAACAAAATCCTCCGCCTTCCACCCGTCGATGCT-TCCGC 2632 Query 29590 CCTCCTGT----TTATCCTCAGTGTGGGAAAGGGTCTGGGCTCCCTCTCGAGCTGAATCC 29645 ||| || | | ||| ||| |||||| | |||||| | ||| ||||| | Sbjct 2631 CCTTCTCTCGAGTAATCTCCAGCTCTGGAAAGTCACGGGGCTCGCGCTCAAGCTGCGTGT 2572 Query 29646 TCAGCGGTTCCACGTGGTCAAGGTAGACGTGAGCATCTCCCAGGGTGTGGACAAACTCTC 29705 | || | ||||||||||| ||||||||||| ||||| |||| | ||| | | || Sbjct 2571 TGAGAGCATCCACGTGGTCGAGGTAGACGTGCGCATCGCCCATGACGTG-AGTGAGGCTG 2513 Query 29706 CC-GGTTCTAGCCCGGTGACGTGAGCCATCATGTACGTGAGGAGAGAGTAGCTGGCGATG 29764 || || | | || |||||| |||||||||| || || || | ||||||||| ||| Sbjct 2512 CCAGGCACCAATTCGCAGACGTGCGCCATCATGTGTGTCAGCAGTGCGTAGCTGGCAATG 2453 Query 29765 TTAAAGGGCACCCCGAGCCCCATGTCCCCTGACCTCTGGTAGAGCTGGCA 29814 || || || || ||||| |||||||| | || | ||||||||||||||| Sbjct 2452 TTGAACGGGACGCCGAGACCCATGTCGCAGGATCGCTGGTAGAGCTGGCA 2403 >seq2233 Length=6986 Score = 87.8 bits (96), Expect = 1e-12 Identities = 130/180 (72%), Gaps = 6/180 (3%) Strand=Plus/Plus Query 53494 CGTCAAGGTGAGGCTGAGGACCCCCAGGCACCCAGAGATGGGCGACAAGTTTGCATC-CT 53552 ||||||||| | ||||||| ||| | || |||| |||||||||||||| || | Sbjct 5427 CGTCAAGGTCCGTGTGAGGACGACCAAGATTCCCCAGATTGGCGACAAGTTTGCCTCTCG 5486 Query 53553 TCACGGCGCAAAAGGGGACATGCGGAGCG--GTCCTGACTCAGGAGGACATGCCCTTCGA 53610 |||||| || ||||| || || | | || | | ||||||||| ||||||||| Sbjct 5487 TCACGGA-CAGAAGGGTACCATTGGTGTGACGTACCG--TCAGGAGGATATGCCCTTCAG 5543 Query 53611 CAAGGACGGGGTGGTGCCCGACCTCATCATCAACCCCCACGCCTTTCCCTCCAGGATGAC 53670 || ||| || ||| || ||| | ||||| |||||||||||| |||| || | ||||| Sbjct 5544 CAGGGAGGGTGTGACACCGGACATTATCATTAACCCCCACGCCATTCCGTCGCGAATGAC 5603 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 406049451330394