Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Fusarium_20tucumaniae_20[genbank_20GCA_5F001680595.1_202016-07-06]
22,979 sequences; 49,676,379 total letters
Query= NC_030842.1
Length=115510
Score E
Sequences producing significant alignments: (Bits) Value
seq5378 118 8e-22
seq2233 82.4 6e-11
>seq5378
Length=3710
Score = 118 bits (130), Expect = 8e-22
Identities = 202/289 (70%), Gaps = 7/289 (2%)
Strand=Plus/Minus
Query 27025 TGAGGGTCGTAACCCTCCAGGGAGAAATCCTCTGCCTTAAAGTCGTCCAGGCTCTCCACC 27084
|||||||| || |||| | |||||||| ||||| | |||| | ||| ||| ||
Sbjct 2689 TGAGGGTCATAGCCCTTGATAACAAAATCCTCCGCCTTCCACCCGTCGATGCT-TCCGCC 2631
Query 27085 CTCCTGT----TTATCCTCAGTGTGGGAAAGGGTCTGGGCTCCCTCTCGAGCTGAGTCTT 27140
|| || | | ||| ||| |||||| | |||||| | ||| ||||| || ||
Sbjct 2630 CTTCTCTCGAGTAATCTCCAGCTCTGGAAAGTCACGGGGCTCGCGCTCAAGCTGCGTGTT 2571
Query 27141 CAGCGGTTCCACGTGATCCAGGTAGACGTGAGCGTCTCCCAGGGTGTGGACAAACTCTCC 27200
|| | |||||||| || ||||||||||| || || |||| | ||| | | || |
Sbjct 2570 GAGAGCATCCACGTGGTCGAGGTAGACGTGCGCATCGCCCATGACGTG-AGTGAGGCTGC 2512
Query 27201 C-GGTTCTAGCCCGGTGACGTGAGCCATCATGTACGTGAGGAGAGAGTAGCTGGCGATGT 27259
| || | | || |||||| |||||||||| || || || | ||||||||| ||||
Sbjct 2511 CAGGCACCAATTCGCAGACGTGCGCCATCATGTGTGTCAGCAGTGCGTAGCTGGCAATGT 2452
Query 27260 TAAAGGGTACCCCGAGCCCCATGTCCCCCGACCTCTGGTAGAGCTGACA 27308
| || || || ||||| |||||||| | || | |||||||||||| ||
Sbjct 2451 TGAACGGGACGCCGAGACCCATGTCGCAGGATCGCTGGTAGAGCTGGCA 2403
Score = 95.1 bits (104), Expect = 9e-15
Identities = 187/273 (68%), Gaps = 8/273 (3%)
Strand=Plus/Minus
Query 27454 AGCTGATCCACCCCCATCCCCGAGTAGTCTACCCTCATG---TCCGTGTACTCTGCTCCG 27510
||||| || || ||| | |||| |||||| | || || || |||||| || ||
Sbjct 2218 AGCTGGTCGACGCCCTTGCCCGTGTAGTC---CGTCTTGGCATCAACGTACTCGGCGCCA 2162
Query 27511 AAATGCCTCCATTGGAACCCGTACACCGGTCCCAGGTCTCCCTCTTCCCTGTGCTCGAAG 27570
|| || | ||||||||| |||||||| || || || || || | || | ||| | || |
Sbjct 2161 AAGTGTCGCCATTGGAAGCCGTACACGGGGCCGAGATCGCCGACCTCGCGGTGGTTGAGG 2102
Query 27571 CCCCTCTTGTCCAAAAAGTCTCTGGAACCGTTGGCGTCCCAGATCTTTACCCCCTTCTCG 27630
|| ||||| | || || | ||| || ||| ||||||||||||| | || ||||
Sbjct 2101 CCGAGGTTGTCGAGGAACTCGCGGGAGCCATTGCCGTCCCAGATCTTGATGCCGGCCTCG 2042
Query 27631 GAGAGCTCTTTGGAGTTTGTGGA-CCCTCTGACGAACCACAGCAGCTCCTCCACGACGGC 27689
||| ||||| |||| ||||| || |||||| || ||||| | | ||||||
Sbjct 2041 CTGAGGCTGGTGGAGGATGTGTTGCCCTC-GATGAACCAGAGGAGCTCGGCGATGACGGC 1983
Query 27690 CTTCCAAAAGACCCTCTTGGTCGTGAGGAGGGG 27722
||||| | |||||| |||||||||||
Sbjct 1982 GCGGGTGAAGACGCGCTTGGTGGTGAGGAGGGG 1950
>seq2233
Length=6986
Score = 82.4 bits (90), Expect = 6e-11
Identities = 130/180 (72%), Gaps = 6/180 (3%)
Strand=Plus/Plus
Query 48510 CGTCAAGGTGAGGCTGAGGACCCCCAGGCACCCAGAGATGGGTGACAAGTTTGCGTC-CT 48568
||||||||| | ||||||| ||| | || |||| || ||||||||||| || |
Sbjct 5427 CGTCAAGGTCCGTGTGAGGACGACCAAGATTCCCCAGATTGGCGACAAGTTTGCCTCTCG 5486
Query 48569 TCACGGCGCAAAAGGGGACATGTGGAGCCGTCCTGACC--CAGGAGGACATGCCCTTCGA 48626
|||||| || ||||| || ||| | | | | ||| |||||||| |||||||||
Sbjct 5487 TCACGGA-CAGAAGGGTACCATTGGTGT-GACGT-ACCGTCAGGAGGATATGCCCTTCAG 5543
Query 48627 CAAGGACGGGGTGGTGCCCGACCTCATCATCAACCCCCACGCCTTTCCCTCCAGGATGAC 48686
|| ||| || ||| || ||| | ||||| |||||||||||| |||| || | |||||
Sbjct 5544 CAGGGAGGGTGTGACACCGGACATTATCATTAACCCCCACGCCATTCCGTCGCGAATGAC 5603
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 369403717083749
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |