Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Fusarium_20tucumaniae_20[genbank_20GCA_5F001680595.1_202016-07-06] 22,979 sequences; 49,676,379 total letters Query= NC_030842.1 Length=115510 Score E Sequences producing significant alignments: (Bits) Value seq5378 118 8e-22 seq2233 82.4 6e-11 >seq5378 Length=3710 Score = 118 bits (130), Expect = 8e-22 Identities = 202/289 (70%), Gaps = 7/289 (2%) Strand=Plus/Minus Query 27025 TGAGGGTCGTAACCCTCCAGGGAGAAATCCTCTGCCTTAAAGTCGTCCAGGCTCTCCACC 27084 |||||||| || |||| | |||||||| ||||| | |||| | ||| ||| || Sbjct 2689 TGAGGGTCATAGCCCTTGATAACAAAATCCTCCGCCTTCCACCCGTCGATGCT-TCCGCC 2631 Query 27085 CTCCTGT----TTATCCTCAGTGTGGGAAAGGGTCTGGGCTCCCTCTCGAGCTGAGTCTT 27140 || || | | ||| ||| |||||| | |||||| | ||| ||||| || || Sbjct 2630 CTTCTCTCGAGTAATCTCCAGCTCTGGAAAGTCACGGGGCTCGCGCTCAAGCTGCGTGTT 2571 Query 27141 CAGCGGTTCCACGTGATCCAGGTAGACGTGAGCGTCTCCCAGGGTGTGGACAAACTCTCC 27200 || | |||||||| || ||||||||||| || || |||| | ||| | | || | Sbjct 2570 GAGAGCATCCACGTGGTCGAGGTAGACGTGCGCATCGCCCATGACGTG-AGTGAGGCTGC 2512 Query 27201 C-GGTTCTAGCCCGGTGACGTGAGCCATCATGTACGTGAGGAGAGAGTAGCTGGCGATGT 27259 | || | | || |||||| |||||||||| || || || | ||||||||| |||| Sbjct 2511 CAGGCACCAATTCGCAGACGTGCGCCATCATGTGTGTCAGCAGTGCGTAGCTGGCAATGT 2452 Query 27260 TAAAGGGTACCCCGAGCCCCATGTCCCCCGACCTCTGGTAGAGCTGACA 27308 | || || || ||||| |||||||| | || | |||||||||||| || Sbjct 2451 TGAACGGGACGCCGAGACCCATGTCGCAGGATCGCTGGTAGAGCTGGCA 2403 Score = 95.1 bits (104), Expect = 9e-15 Identities = 187/273 (68%), Gaps = 8/273 (3%) Strand=Plus/Minus Query 27454 AGCTGATCCACCCCCATCCCCGAGTAGTCTACCCTCATG---TCCGTGTACTCTGCTCCG 27510 ||||| || || ||| | |||| |||||| | || || || |||||| || || Sbjct 2218 AGCTGGTCGACGCCCTTGCCCGTGTAGTC---CGTCTTGGCATCAACGTACTCGGCGCCA 2162 Query 27511 AAATGCCTCCATTGGAACCCGTACACCGGTCCCAGGTCTCCCTCTTCCCTGTGCTCGAAG 27570 || || | ||||||||| |||||||| || || || || || | || | ||| | || | Sbjct 2161 AAGTGTCGCCATTGGAAGCCGTACACGGGGCCGAGATCGCCGACCTCGCGGTGGTTGAGG 2102 Query 27571 CCCCTCTTGTCCAAAAAGTCTCTGGAACCGTTGGCGTCCCAGATCTTTACCCCCTTCTCG 27630 || ||||| | || || | ||| || ||| ||||||||||||| | || |||| Sbjct 2101 CCGAGGTTGTCGAGGAACTCGCGGGAGCCATTGCCGTCCCAGATCTTGATGCCGGCCTCG 2042 Query 27631 GAGAGCTCTTTGGAGTTTGTGGA-CCCTCTGACGAACCACAGCAGCTCCTCCACGACGGC 27689 ||| ||||| |||| ||||| || |||||| || ||||| | | |||||| Sbjct 2041 CTGAGGCTGGTGGAGGATGTGTTGCCCTC-GATGAACCAGAGGAGCTCGGCGATGACGGC 1983 Query 27690 CTTCCAAAAGACCCTCTTGGTCGTGAGGAGGGG 27722 ||||| | |||||| ||||||||||| Sbjct 1982 GCGGGTGAAGACGCGCTTGGTGGTGAGGAGGGG 1950 >seq2233 Length=6986 Score = 82.4 bits (90), Expect = 6e-11 Identities = 130/180 (72%), Gaps = 6/180 (3%) Strand=Plus/Plus Query 48510 CGTCAAGGTGAGGCTGAGGACCCCCAGGCACCCAGAGATGGGTGACAAGTTTGCGTC-CT 48568 ||||||||| | ||||||| ||| | || |||| || ||||||||||| || | Sbjct 5427 CGTCAAGGTCCGTGTGAGGACGACCAAGATTCCCCAGATTGGCGACAAGTTTGCCTCTCG 5486 Query 48569 TCACGGCGCAAAAGGGGACATGTGGAGCCGTCCTGACC--CAGGAGGACATGCCCTTCGA 48626 |||||| || ||||| || ||| | | | | ||| |||||||| ||||||||| Sbjct 5487 TCACGGA-CAGAAGGGTACCATTGGTGT-GACGT-ACCGTCAGGAGGATATGCCCTTCAG 5543 Query 48627 CAAGGACGGGGTGGTGCCCGACCTCATCATCAACCCCCACGCCTTTCCCTCCAGGATGAC 48686 || ||| || ||| || ||| | ||||| |||||||||||| |||| || | ||||| Sbjct 5544 CAGGGAGGGTGTGACACCGGACATTATCATTAACCCCCACGCCATTCCGTCGCGAATGAC 5603 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 369403717083749