Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Fusarium_20tucumaniae_20[genbank_20GCA_5F001680595.1_202016-07-06] 22,979 sequences; 49,676,379 total letters Query= NC_031465.1 Length=360610 Score E Sequences producing significant alignments: (Bits) Value seq3152 107 4e-18 seq1887 98.7 2e-15 seq2302 93.3 1e-13 >seq3152 Length=5241 Score = 107 bits (118), Expect = 4e-18 Identities = 155/219 (71%), Gaps = 0/219 (0%) Strand=Plus/Plus Query 151886 GAGTCTGAGGACAAGATGAAGAGTAGACTCTTTTTGGATGTTGTAATCGGCTAAAGTTCT 151945 ||| | ||| ||||||||||| || ||||| || ||||||||||| |||| | || | Sbjct 3766 GAGACGGAGAACAAGATGAAGGGTCGACTCCTTCTGGATGTTGTAGTCGGACAGGGTACG 3825 Query 151946 CCCATCTTCTAGGCTTTTCCCGGCGAAGATAAGCCTCTGCTGGTCCGCCGAGATTCCTTC 152005 || ||||| || || || || |||||||| | ||||||||| | | ||| || || Sbjct 3826 ACCGTCTTCCAGCTGCTTACCAGCAAAGATAAGTCGCTGCTGGTCAGGGGGGATGCCCTC 3885 Query 152006 CTTTTCTTGAATTTTTTGTTTGACAGTCTCTACGCTGTCTGAACTCTCTACTTCAAGAGT 152065 ||| || ||||| || || || | || | | | || ||| || || ||||| Sbjct 3886 CTTGTCCTGAATCTTGGACTTCACGTTGTCAATGGTATCGCTCGACTCCACCTCCAGAGT 3945 Query 152066 AATAGTTTTGCCCGTGAGAGTCTTCACGAAGACCTGCAT 152104 || || || || ||||||||||| || |||| |||||| Sbjct 3946 GATGGTCTTTCCAGTGAGAGTCTTGACAAAGATCTGCAT 3984 Score = 98.7 bits (108), Expect = 2e-15 Identities = 149/212 (70%), Gaps = 0/212 (0%) Strand=Plus/Plus Query 151893 AGGACAAGATGAAGAGTAGACTCTTTTTGGATGTTGTAATCGGCTAAAGTTCTCCCATCT 151952 || || || || ||||| ||||| || ||||||||||| ||| | ||||| || || Sbjct 4001 AGAACCAGGTGCAGAGTCGACTCCTTCTGGATGTTGTAGTCGCTGAGAGTTCGGCCGTCC 4060 Query 151953 TCTAGGCTTTTCCCGGCGAAGATAAGCCTCTGCTGGTCCGCCGAGATTCCTTCCTTTTCT 152012 || || || ||||| ||||| || | ||| || || | | || |||||||| || Sbjct 4061 TCGAGCTGCTTGCCGGCAAAGATGAGTCGCTGTTGATCAGGAGGAATGCCTTCCTTGTCC 4120 Query 152013 TGAATTTTTTGTTTGACAGTCTCTACGCTGTCTGAACTCTCTACTTCAAGAGTAATAGTT 152072 || || || ||| ||| | || | | |||| || || || ||||| || || || Sbjct 4121 TGGATCTTCGATTTCACATTGTCAATGGTGTCGGACGATTCCACCTCAAGGGTGATGGTC 4180 Query 152073 TTGCCCGTGAGAGTCTTCACGAAGACCTGCAT 152104 || || ||||| ||||| ||||||| |||||| Sbjct 4181 TTTCCGGTGAGGGTCTTGACGAAGATCTGCAT 4212 Score = 98.7 bits (108), Expect = 2e-15 Identities = 135/189 (71%), Gaps = 0/189 (0%) Strand=Plus/Plus Query 151892 GAGGACAAGATGAAGAGTAGACTCTTTTTGGATGTTGTAATCGGCTAAAGTTCTCCCATC 151951 |||||| || || || || ||||| || |||||||||||||||| | || | ||||| Sbjct 4503 GAGGACGAGGTGGAGGGTCGACTCCTTCTGGATGTTGTAATCGGAGAGGGTGCGGCCATC 4562 Query 151952 TTCTAGGCTTTTCCCGGCGAAGATAAGCCTCTGCTGGTCCGCCGAGATTCCTTCCTTTTC 152011 || || || |||||||| || || | ||||||||| | | ||| || ||||| || Sbjct 4563 CTCAAGCTGCTTGCCGGCGAAAATCAGACGCTGCTGGTCGGGGGGGATGCCCTCCTTGTC 4622 Query 152012 TTGAATTTTTTGTTTGACAGTCTCTACGCTGTCTGAACTCTCTACTTCAAGAGTAATAGT 152071 ||||| || |||||| | || | | | || || ||| || || || ||||| || Sbjct 4623 CTGAATCTTCGACTTGACATTGTCGATGGTATCCGAGGACTCGACCTCGAGGGTAATGGT 4682 Query 152072 TTTGCCCGT 152080 |||||||| Sbjct 4683 CTTGCCCGT 4691 >seq1887 Length=5954 Score = 98.7 bits (108), Expect = 2e-15 Identities = 129/179 (72%), Gaps = 0/179 (0%) Strand=Plus/Minus Query 151917 TTTTGGATGTTGTAATCGGCTAAAGTTCTCCCATCTTCTAGGCTTTTCCCGGCGAAGATA 151976 || ||||||||||| |||| | |||| ||||| || || || || |||||||| Sbjct 4639 TTCTGGATGTTGTAGTCGGAAAGGGTTCGGCCATCCTCCAGCTGCTTGCCAGCGAAGATC 4580 Query 151977 AGCCTCTGCTGGTCCGCCGAGATTCCTTCCTTTTCTTGAATTTTTTGTTTGACAGTCTCT 152036 || | ||||||||||| | ||| || ||||| || || || || |||||| | || Sbjct 4579 AGTCGCTGCTGGTCCGGGGGGATGCCCTCCTTGTCCTGGATCTTGGACTTGACATTGTCA 4520 Query 152037 ACGCTGTCTGAACTCTCTACTTCAAGAGTAATAGTTTTGCCCGTGAGAGTCTTCACGAA 152095 | | |||| || ||| || || || || || || |||||||| || ||||||||||| Sbjct 4519 ATGGTGTCCGAGGACTCGACCTCGAGGGTGATGGTCTTGCCCGTCAGGGTCTTCACGAA 4461 >seq2302 Length=6171 Score = 93.3 bits (102), Expect = 1e-13 Identities = 152/219 (69%), Gaps = 0/219 (0%) Strand=Plus/Minus Query 151892 GAGGACAAGATGAAGAGTAGACTCTTTTTGGATGTTGTAATCGGCTAAAGTTCTCCCATC 151951 |||||| || || || || ||| || ||||||||||| ||| | || | ||||| Sbjct 888 GAGGACCAGGTGGAGGGTGCTCTCCTTCTGGATGTTGTAGTCGCTCAGGGTGCGGCCATC 829 Query 151952 TTCTAGGCTTTTCCCGGCGAAGATAAGCCTCTGCTGGTCCGCCGAGATTCCTTCCTTTTC 152011 || || || || || ||||| || | ||||||||| | | ||| || ||||| || Sbjct 828 CTCGAGCTGCTTGCCAGCAAAGATGAGTCGCTGCTGGTCGGGGGGGATGCCCTCCTTGTC 769 Query 152012 TTGAATTTTTTGTTTGACAGTCTCTACGCTGTCTGAACTCTCTACTTCAAGAGTAATAGT 152071 || || || ||||| | || | | |||| ||| ||| || || || || || || Sbjct 768 CTGGATCTTGGACTTGACGTTGTCGATGGTGTCGGAAGACTCCACCTCGAGGGTGATTGT 709 Query 152072 TTTGCCCGTGAGAGTCTTCACGAAGACCTGCATTTTACC 152110 || |||||||| ||||| || |||| |||||| || || Sbjct 708 CTTCCCCGTGAGGGTCTTGACAAAGATCTGCATCTTGCC 670 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1153481093882909