Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Fusarium_20tucumaniae_20[genbank_20GCA_5F001680595.1_202016-07-06]
22,979 sequences; 49,676,379 total letters
Query= NC_032001.1
Length=327147
Score E
Sequences producing significant alignments: (Bits) Value
seq2302 178 3e-39
seq3152 163 6e-35
seq1887 138 2e-27
seq3398 114 3e-20
seq1003 95.1 3e-14
>seq2302
Length=6171
Score = 178 bits (196), Expect = 3e-39
Identities = 178/231 (77%), Gaps = 0/231 (0%)
Strand=Plus/Minus
Query 282872 ACCACCACGCAGGCGAAGTACCAGATGTAACGTGCTTTCTTTTTGGATGTTGTAGTCAGC 282931
||||||||||||||| || ||||| || | ||||| || || ||||||||||||||
Sbjct 903 ACCACCACGCAGGCGGAGGACCAGGTGGAGGGTGCTCTCCTTCTGGATGTTGTAGTCGCT 844
Query 282932 AAGCGTGCGGCCATCCTCTAGTTGTTTCCCGGCAAAGATCAAACGTTGTTGGTCACCCGG 282991
|| |||||||||||||| || || || || |||||||| | || || ||||| ||
Sbjct 843 CAGGGTGCGGCCATCCTCGAGCTGCTTGCCAGCAAAGATGAGTCGCTGCTGGTCGGGGGG 784
Query 282992 AATACCCTCCTTGTCTTGGATCTTTGCTTTTACGGTATCGATAGTGTCCGAAGCTTCGAC 283051
|| ||||||||||| |||||||| | || ||| | ||||| ||||| |||| || ||
Sbjct 783 GATGCCCTCCTTGTCCTGGATCTTGGACTTGACGTTGTCGATGGTGTCGGAAGACTCCAC 724
Query 283052 TTCGAGAGTGATCGTCTTACCCGTCAAAGTCTTAACGAATATCTGCATTTT 283102
||||| ||||| ||||| ||||| | ||||| || || |||||||| ||
Sbjct 723 CTCGAGGGTGATTGTCTTCCCCGTGAGGGTCTTGACAAAGATCTGCATCTT 673
>seq3152
Length=5241
Score = 163 bits (180), Expect = 6e-35
Identities = 167/218 (77%), Gaps = 0/218 (0%)
Strand=Plus/Plus
Query 282872 ACCACCACGCAGGCGAAGTACCAGATGTAACGTGCTTTCTTTTTGGATGTTGTAGTCAGC 282931
||||||||| ||||| || || || || | || || || || ||||||||||| ||
Sbjct 4213 ACCACCACGGAGGCGGAGGACGAGGTGGAGTGTTGACTCCTTCTGAATGTTGTAGTCGGC 4272
Query 282932 AAGCGTGCGGCCATCCTCTAGTTGTTTCCCGGCAAAGATCAAACGTTGTTGGTCACCCGG 282991
|| |||||||||||||| || || || ||||| || |||| || || |||||| ||
Sbjct 4273 GAGGGTGCGGCCATCCTCAAGCTGCTTGCCGGCGAAAATCAGGCGCTGCTGGTCAGGAGG 4332
Query 282992 AATACCCTCCTTGTCTTGGATCTTTGCTTTTACGGTATCGATAGTGTCCGAAGCTTCGAC 283051
|||||||||||| ||||||||||| | || ||| | ||||| ||||| |||| || ||
Sbjct 4333 AATACCCTCCTTATCTTGGATCTTCGACTTGACGTTGTCGATCGTGTCGGAAGACTCCAC 4392
Query 283052 TTCGAGAGTGATCGTCTTACCCGTCAAAGTCTTAACGA 283089
||||| ||||| |||||||| || | ||||| ||||
Sbjct 4393 CTCGAGGGTGATAGTCTTACCAGTGAGGGTCTTGACGA 4430
Score = 150 bits (166), Expect = 4e-31
Identities = 170/228 (75%), Gaps = 0/228 (0%)
Strand=Plus/Plus
Query 282872 ACCACCACGCAGGCGAAGTACCAGATGTAACGTGCTTTCTTTTTGGATGTTGTAGTCAGC 282931
|||||| ||||| ||||| ||||| || | || || || ||||||||||||||
Sbjct 3985 ACCACCGCGCAGACGAAGAACCAGGTGCAGAGTCGACTCCTTCTGGATGTTGTAGTCGCT 4044
Query 282932 AAGCGTGCGGCCATCCTCTAGTTGTTTCCCGGCAAAGATCAAACGTTGTTGGTCACCCGG 282991
|| || ||||| ||||| || || || ||||||||||| | || ||||| ||| ||
Sbjct 4045 GAGAGTTCGGCCGTCCTCGAGCTGCTTGCCGGCAAAGATGAGTCGCTGTTGATCAGGAGG 4104
Query 282992 AATACCCTCCTTGTCTTGGATCTTTGCTTTTACGGTATCGATAGTGTCCGAAGCTTCGAC 283051
||| || |||||||| |||||||| | ||| || | || || ||||| || | ||| ||
Sbjct 4105 AATGCCTTCCTTGTCCTGGATCTTCGATTTCACATTGTCAATGGTGTCGGACGATTCCAC 4164
Query 283052 TTCGAGAGTGATCGTCTTACCCGTCAAAGTCTTAACGAATATCTGCAT 283099
|| || ||||| ||||| || || | ||||| ||||| ||||||||
Sbjct 4165 CTCAAGGGTGATGGTCTTTCCGGTGAGGGTCTTGACGAAGATCTGCAT 4212
Score = 131 bits (144), Expect = 4e-25
Identities = 152/205 (74%), Gaps = 0/205 (0%)
Strand=Plus/Plus
Query 282873 CCACCACGCAGGCGAAGTACCAGATGTAACGTGCTTTCTTTTTGGATGTTGTAGTCAGCA 282932
|||||||| ||||| || || || || | || || || ||||||||||| || |
Sbjct 4489 CCACCACGAAGGCGGAGGACGAGGTGGAGGGTCGACTCCTTCTGGATGTTGTAATCGGAG 4548
Query 282933 AGCGTGCGGCCATCCTCTAGTTGTTTCCCGGCAAAGATCAAACGTTGTTGGTCACCCGGA 282992
|| |||||||||||||| || || || ||||| || |||| ||| || ||||| ||
Sbjct 4549 AGGGTGCGGCCATCCTCAAGCTGCTTGCCGGCGAAAATCAGACGCTGCTGGTCGGGGGGG 4608
Query 282993 ATACCCTCCTTGTCTTGGATCTTTGCTTTTACGGTATCGATAGTGTCCGAAGCTTCGACT 283052
|| ||||||||||| || ||||| | || || | ||||| || ||||| | |||||
Sbjct 4609 ATGCCCTCCTTGTCCTGAATCTTCGACTTGACATTGTCGATGGTATCCGAGGACTCGACC 4668
Query 283053 TCGAGAGTGATCGTCTTACCCGTCA 283077
||||| || || ||||| |||||||
Sbjct 4669 TCGAGGGTAATGGTCTTGCCCGTCA 4693
Score = 114 bits (126), Expect = 3e-20
Identities = 162/228 (71%), Gaps = 0/228 (0%)
Strand=Plus/Plus
Query 282872 ACCACCACGCAGGCGAAGTACCAGATGTAACGTGCTTTCTTTTTGGATGTTGTAGTCAGC 282931
||| ||||| || || || || ||||| | || || || |||||||||||||| |
Sbjct 3757 ACCGCCACGGAGACGGAGAACAAGATGAAGGGTCGACTCCTTCTGGATGTTGTAGTCGGA 3816
Query 282932 AAGCGTGCGGCCATCCTCTAGTTGTTTCCCGGCAAAGATCAAACGTTGTTGGTCACCCGG 282991
|| || || || || || || || || || |||||||| | || || |||||| ||
Sbjct 3817 CAGGGTACGACCGTCTTCCAGCTGCTTACCAGCAAAGATAAGTCGCTGCTGGTCAGGGGG 3876
Query 282992 AATACCCTCCTTGTCTTGGATCTTTGCTTTTACGGTATCGATAGTGTCCGAAGCTTCGAC 283051
|| ||||||||||| || ||||| | || ||| | || || || || | || ||
Sbjct 3877 GATGCCCTCCTTGTCCTGAATCTTGGACTTCACGTTGTCAATGGTATCGCTCGACTCCAC 3936
Query 283052 TTCGAGAGTGATCGTCTTACCCGTCAAAGTCTTAACGAATATCTGCAT 283099
|| |||||||| ||||| || || | |||||| || || ||||||||
Sbjct 3937 CTCCAGAGTGATGGTCTTTCCAGTGAGAGTCTTGACAAAGATCTGCAT 3984
>seq1887
Length=5954
Score = 138 bits (152), Expect = 2e-27
Identities = 138/179 (77%), Gaps = 0/179 (0%)
Strand=Plus/Minus
Query 282912 TTTTGGATGTTGTAGTCAGCAAGCGTGCGGCCATCCTCTAGTTGTTTCCCGGCAAAGATC 282971
|| |||||||||||||| | ||| || ||||||||||| || || || || || ||||||
Sbjct 4639 TTCTGGATGTTGTAGTCGGAAAGGGTTCGGCCATCCTCCAGCTGCTTGCCAGCGAAGATC 4580
Query 282972 AAACGTTGTTGGTCACCCGGAATACCCTCCTTGTCTTGGATCTTTGCTTTTACGGTATCG 283031
| || || ||||| || || ||||||||||| |||||||| | || || | ||
Sbjct 4579 AGTCGCTGCTGGTCCGGGGGGATGCCCTCCTTGTCCTGGATCTTGGACTTGACATTGTCA 4520
Query 283032 ATAGTGTCCGAAGCTTCGACTTCGAGAGTGATCGTCTTACCCGTCAAAGTCTTAACGAA 283090
|| |||||||| | ||||| ||||| ||||| ||||| ||||||| ||||| |||||
Sbjct 4519 ATGGTGTCCGAGGACTCGACCTCGAGGGTGATGGTCTTGCCCGTCAGGGTCTTCACGAA 4461
>seq3398
Length=5185
Score = 114 bits (126), Expect = 3e-20
Identities = 174/248 (70%), Gaps = 0/248 (0%)
Strand=Plus/Minus
Query 230163 ATCGTCACAGAAGTAGTTGCAAATGAAAAGGAGTTCATTTGCGACGCTATTCCTTGCCGT 230222
||| |||| || | || | | ||| |||||||| | ||| || | || |||
Sbjct 1221 ATCATCACCGATGCCGTCACCATTGAGCAGGAGTTCCTGACCGAGGCCCTCCCCTGCGCC 1162
Query 230223 CTTATCGGCATGAATGCTGATCTCATGGGGCAATATATCGAATTCGTAGCTGATCGTATT 230282
|| |||||||||| || || |||||| ||| || ||||| ||||| || || || |
Sbjct 1161 CTGCTCGGCATGAACGCCGACCTCATGAAGCAGTACATCGAGTTCGTCGCCGACCGCCTC 1102
Query 230283 TTCGTGGCGCTAGGGTACGAGAAAGTGTATAACTCCAAGAACCCCTTCGCTTTTATGGAG 230342
|||| || || || ||||||| || || || ||| |||||||||| || ||||||
Sbjct 1101 CTCGTCGCCCTCGGCAACGAGAAGGTCTACAAGGCCACCAACCCCTTCGACTTCATGGAG 1042
Query 230343 CTCATTTCACTCCAGGGGAAAACTAACTTCTTCGAAAAGCGTGTCAGCGATTATCAAAGG 230402
||| || ||| || || || ||||||||||| ||||||||| | || || || | |
Sbjct 1041 AACATCTCCCTCGGTGGCAAGACCAACTTCTTCGAGAAGCGTGTCGGTGACTACCAGAAG 982
Query 230403 CCCGGTGT 230410
| |||||
Sbjct 981 GCTGGTGT 974
>seq1003
Length=11632
Score = 95.1 bits (104), Expect = 3e-14
Identities = 139/194 (72%), Gaps = 2/194 (1%)
Strand=Plus/Minus
Query 315667 ACCCCACCTCCGAAATTCTTAAGCGCCTCTGCCATGGCACCGAGACTCTCGCGGTCCACA 315726
|| ||||| |||| ||||| || |||| | || |||||||||| || || || |
Sbjct 5451 ACACCACCCTCGAAGTTCTTGAGGGCCTTGGACAGGGCACCGAGAGAGTCACGATCGAGG 5392
Query 315727 AAGTTGGTCGGCTCATCAAGAACGATGACGTGGGGTTGTTGCCATAGAGC-GGCGCCGAT 315785
||||||| ||||| || || ||||| | || ||| | ||||| ||||| |||| |||
Sbjct 5391 TAGTTGGTGGGCTCGTCCAGGACGATAAGATGAGGTCGCTGCCA-AGAGCAGGCGGCGAG 5333
Query 315786 AACGAGCTTTAGTTTTTGCCCACCAGACAGTCCACGGATGCGAGAATGAGTGGTAAATTC 315845
|| ||| | || ||||||||||| ||||| |||||||| |||| | || ||
Sbjct 5332 CACAGTCTTGACACGCTGACCACCAGACAGACCACGCATGCGAGAGTGAGAGACAAGCTC 5273
Query 315846 TGGGTCAAGGCCAA 315859
| ||| |||||||
Sbjct 5272 GGCGTCGAGGCCAA 5259
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 1046431020680266
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |