Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Fusarium_20tucumaniae_20[genbank_20GCA_5F001680725.1_202016-07-06] 54,001 sequences; 49,886,306 total letters Query= NC_001973.1 Length=161046 Score E Sequences producing significant alignments: (Bits) Value seq9934 318 6e-82 seq4691 141 1e-28 seq12608 129 6e-25 seq28553 118 1e-21 seq17448 116 4e-21 seq19757 109 6e-19 >seq9934 Length=2663 Score = 318 bits (352), Expect = 6e-82 Identities = 561/805 (70%), Gaps = 17/805 (2%) Strand=Plus/Minus Query 116636 ATGTGGCGCATGTACAAAAAGGCCGAGGCGTCGTTCTGGACCGTCGAGGAGGTGGACCTG 116695 || |||| |||||||| ||||||||||| || |||||||| | ||||||| | || | Sbjct 930 ATCTGGCAGATGTACAAGAAGGCCGAGGCCTCTTTCTGGACTGCCGAGGAGATTGATTTA 871 Query 116696 TCCAAGGA-CACGAGCGACTGGGAG---CGCTTGAACGACAACGAGCGCCATTTCATCAA 116751 |||||||| | | | ||||||| | ||| ||| | | |||||| ||| || Sbjct 870 TCCAAGGATCTCCA-CGACTGGAACAACCGCCTGACTGCCGACGAGCAGTTCTTCGTCTC 812 Query 116752 GCACGTGCTGGCCTTTTTCGCCGCCAGCGACGGCATCGTCAACGAGAATCTGGTCGAGCG 116811 ||| | || ||||| ||||| || |||||||||||||||||||| || |||||||| Sbjct 811 CCACATCCTCGCCTTCTTCGCTGCATCTGACGGCATCGTCAACGAGAACCTTGTCGAGCG 752 Query 116812 TTTCGCTCAGGAGGTGCAGGTGGCCGAGGCGCGGTGCTTCTACGGCTTTCAGATCGCCAT 116871 ||| ||||| ||| | ||||||| || |||||||||||||| |||||| || Sbjct 751 ATTCAGCGGCGAGGTCCAGATCCCCGAGGCCCGATGCTTCTACGGCTTCCAGATCATGAT 692 Query 116872 GGAGAACGTGCACTCGGAAATGTATTCGACCCTCATCGACACGTACGT----GCGCTCTT 116927 ||||||| | ||||| || | || ||| |||||| ||||| ||| | | || || Sbjct 691 GGAGAACATCCACTCCGAGACCTACTCGCTCCTCATTGACACCTACATCAAGGAGC-CTG 633 Query 116928 CGGAGGAGAAGCTCCGTTTGTTGAACGCCATCGAGACGATGCCGTGCGTCAAAGAGAAGG 116987 | | ||| || | | || |||||||| ||||| || || ||| || |||||| Sbjct 632 CTCA-ACGAACCTAC--CTCTTCAACGCCATTGAGACCATCCCCTGCATCCGCAAGAAGG 576 Query 116988 CCGAGTGGGCGCTGCGCTGGATCGCCGGCAGAGAGGCCG-CCTTCGGCGAGCGCCTGGTG 117046 |||| ||||| | || |||||| | || ||| || |||| | |||| || || Sbjct 575 CCGACTGGGCCATCCGATGGATC-CAGGACAAGAACTCGTCCTTTGCTCAGCGTCTCGTC 517 Query 117047 GCCTTCGCGGCCGTCGAGGGCGTCTTCTTTTCGGGCAGTTTCGCCGCCATATTTTGGCTC 117106 || || || ||||||||||| ||||||| || || ||| |||| || |||||| Sbjct 516 GCTTTTGCTGCCGTCGAGGGTATCTTCTTCAGCGGTGCCTTTGCCTCCATCTTCTGGCTC 457 Query 117107 AAGAAACGCGGCCTCATGCCCGGCCTGACTTTCAGCAACGAGCTCATCTCCAGGGACGAG 117166 ||||| || ||||||||||| |||||||| || ||||||||||||||| | |||||| Sbjct 456 AAGAAGCGTGGCCTCATGCCTGGCCTGACCTTTTCCAACGAGCTCATCTCTCGTGACGAG 397 Query 117167 GGTCTGCATTGCGACTTTGCCTGTTTGCTGTTCAAGCATTTGGTGCAGCGACCGAGCGCG 117226 ||||| || ||||||||| || | || | || | | || | ||| | Sbjct 396 GGTCTTCACACCGACTTTGCATGCCTCCTCCACTCCCACCTCAAGGGCCGTGCCAGCAAG 337 Query 117227 GCGCGCGTCAGGGAGATCGTCACCGACGCGGTCGCCATCGAGCAGCGCTTCCTCACCGAA 117286 | | || ||| ||| ||||||| || ||| |||| |||||| ||||| ||||| Sbjct 336 CAGGTCATCCAGGACATCATCACCGATGCCGTCACCATTGAGCAGGAGTTCCTGACCGAG 277 Query 117287 GCGCTGCCGGTGCG-TCTGCTGGGACTCAATTGCGAAACGATGTCGCAATACATCGAGTT 117345 || || || |||| ||||| || | || ||| ||| ||| ||||||||||| Sbjct 276 GCCCT-CCCCTGCGCCCTGCTCGGCATGAACGCCGACCTCATGAAGCAGTACATCGAGTT 218 Query 117346 CGTCGCCGACAGGCTGCTGCTCGAGCTGGTCGGCGCCAAGCACTACAACACGCCCAACCC 117405 |||||||||| | || || ||| || | | || ||| |||||| | ||||||| Sbjct 217 CGTCGCCGACCGCCTCCTCGTCGCCCTCGGCAACGAGAAGGTCTACAAGGCCACCAACCC 158 Query 117406 GCTGGACTTTATGAACCTCATCTCC 117430 | ||||| ||| | ||||||| Sbjct 157 CTTCGACTTCATGGAGAACATCTCC 133 >seq4691 Length=3338 Score = 141 bits (156), Expect = 1e-28 Identities = 140/181 (77%), Gaps = 0/181 (0%) Strand=Plus/Plus Query 40699 TTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAAGCCACCGACAGCGTG 40758 ||||| || || || |||||||| ||||||||| |||| ||||| || | |||| | | Sbjct 1881 TTCGTGAAGACCCTGACGGGCAAGACCATCACCCTCGAGGTCGAGTCCTCGGACACCATT 1940 Query 40759 CAAACGCTCAAGGAAAAAATTCTCGACAAAGAGGGCATCCCCGCGGACCAGCAACGACTC 40818 | | ||||| || || | ||||| |||||||||||| |||||||||| ||||| Sbjct 1941 GACAATGTCAAGTCCAAGATCCAGGACAAGGAGGGCATCCCCCCGGACCAGCAGCGACTG 2000 Query 40819 ATCTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAACATCCAGAAG 40878 |||| ||| ||||| |||||||| || | || ||||| ||||||||||||||||||| Sbjct 2001 ATCTTCGCTGGCAAGCAGCTGGAGGATGGCCGAACCCTTTCCGACTACAACATCCAGAAG 2060 Query 40879 G 40879 | Sbjct 2061 G 2061 >seq12608 Length=1983 Score = 129 bits (142), Expect = 6e-25 Identities = 156/210 (74%), Gaps = 2/210 (1%) Strand=Plus/Plus Query 40690 ATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAAGCCACC 40749 ||||| || || || || || ||||| || || |||||||| | || || || | | | Sbjct 620 ATGCAGATCTTTGTCAAGACTCTCACTGGAAAGACCATCACTCTGGAGGTGGAGTCGAGC 679 Query 40750 GACAGCGTGCA-AACGCTCAAGGAAAAAATTCTCGACAAAGAGGGCATCCCCGCGGACCA 40808 || | | | | |||| | ||| || |||| ||||| |||||||||||| | ||||| Sbjct 680 GATACCATTGACAACG-TGAAGTCCAAGATTCAGGACAAGGAGGGCATCCCCCCTGACCA 738 Query 40809 GCAACGACTCATCTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAA 40868 ||| ||||| |||| || || || |||||||| |||| || ||||| ||||||||| Sbjct 739 GCAGCGACTTATCTTTGCTGGTAAGCAGCTGGAAGACGGTCGTACCCTGTCCGACTACAA 798 Query 40869 CATCCAGAAGGAGGCCACGCTGCATCTAGT 40898 ||||||||||||| | || || ||||| || Sbjct 799 CATCCAGAAGGAGTCGACCCTTCATCTTGT 828 Score = 120 bits (132), Expect = 3e-22 Identities = 152/209 (73%), Gaps = 0/209 (0%) Strand=Plus/Plus Query 40690 ATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAAGCCACC 40749 ||||| || ||||| || || ||||| || || ||||||||| | || || ||| | || Sbjct 392 ATGCAGATCTTCGTCAAGACCCTCACCGGAAAGACCATCACCCTTGAGGTGGAATCGTCC 451 Query 40750 GACAGCGTGCAAACGCTCAAGGAAAAAATTCTCGACAAAGAGGGCATCCCCGCGGACCAG 40809 |||| | | | | | || || || | ||||| || ||||| || | || || Sbjct 452 GACACCATTGACAATGTGAAATCGAAGATCCAGGACAAGGAAGGCATTCCTCCTGATCAA 511 Query 40810 CAACGACTCATCTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAAC 40869 || |||||||||| || ||||| ||||| || |||| || || |||| |||||||||| Sbjct 512 CAGCGACTCATCTTTGCCGGCAAGCAGCTCGAGGACGGCCGAACTCTCAGCGACTACAAC 571 Query 40870 ATCCAGAAGGAGGCCACGCTGCATCTAGT 40898 |||||||||||| | || ||||| || || Sbjct 572 ATCCAGAAGGAGTCGACTCTGCACCTGGT 600 Score = 102 bits (112), Expect = 8e-17 Identities = 144/200 (72%), Gaps = 2/200 (1%) Strand=Plus/Plus Query 40700 TCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAAGCCACCGACAGCGTGC 40759 |||| || || ||||| || || || |||||| |||| || || | |||||| | Sbjct 174 TCGTCAAGACCCTCACTGGTAAGACTATCACCCTCGAGGTGGAGTCTTCCGACACGATCG 233 Query 40760 A-AACGCTCAAGGAAAAAATTCTCGACAAAGAGGGCATCCCCGCGGACCAGCAACGACTC 40818 | |||| ||||| || || | || || ||||| || || | |||||||| || || Sbjct 234 ACAACG-TCAAGTCGAAGATCCAAGATAAGGAGGGTATTCCTCCTGACCAGCAGCGCCTG 292 Query 40819 ATCTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAACATCCAGAAG 40878 || | ||| ||||| ||||| || || | ||||||||| |||||||||||| |||||| Sbjct 293 ATTTTCGCCGGCAAGCAGCTTGAGGATGGCCGCACCCTCGCCGACTACAACATTCAGAAG 352 Query 40879 GAGGCCACGCTGCATCTAGT 40898 ||| | || || || || || Sbjct 353 GAGTCAACACTCCACCTCGT 372 >seq28553 Length=603 Score = 118 bits (130), Expect = 1e-21 Identities = 127/168 (76%), Gaps = 0/168 (0%) Strand=Plus/Plus Query 40714 ACGGGCAAAACCATCACCGTCGACGTCGAAGCCACCGACAGCGTGCAAACGCTCAAGGAA 40773 |||||||| ||||| ||| |||| ||||| || | || | | | | | ||||| Sbjct 429 ACGGGCAAGACCATTACCCTCGAGGTCGAGTCCTCGGATACCATCGACAATGTCAAGTCG 488 Query 40774 AAAATTCTCGACAAAGAGGGCATCCCCGCGGACCAGCAACGACTCATCTACGCGGGCAAA 40833 || |||| ||||| |||||||||||| | |||||||| || || || | ||| ||||| Sbjct 489 AAGATTCAGGACAAGGAGGGCATCCCCCCCGACCAGCAGCGTCTGATTTTCGCCGGCAAG 548 Query 40834 CAGCTGGACGACGAGCGCACCCTCAACGACTACAACATCCAGAAGGAG 40881 ||||| || || | ||||||||| ||| |||||||||||||||||| Sbjct 549 CAGCTTGAGGATGGCCGCACCCTCTCCGATTACAACATCCAGAAGGAG 596 >seq17448 Length=1204 Score = 116 bits (128), Expect = 4e-21 Identities = 106/134 (79%), Gaps = 0/134 (0%) Strand=Plus/Minus Query 40783 GACAAAGAGGGCATCCCCGCGGACCAGCAACGACTCATCTACGCGGGCAAACAGCTGGAC 40842 ||||| |||||||||||| | |||||||| |||||||||| || ||||| ||||| || Sbjct 1195 GACAAGGAGGGCATCCCCCCCGACCAGCAGCGACTCATCTTTGCTGGCAAGCAGCTCGAG 1136 Query 40843 GACGAGCGCACCCTCAACGACTACAACATCCAGAAGGAGGCCACGCTGCATCTAGTGTTG 40902 || | |||||||| | |||||||||||||||||||||| ||| || || || || | Sbjct 1135 GATGGCCGCACCCTGAGCGACTACAACATCCAGAAGGAGAGCACCCTCCACCTGGTCCTC 1076 Query 40903 CGCTTGAGGGGCGG 40916 ||| || | || || Sbjct 1075 CGCCTGCGTGGTGG 1062 >seq19757 Length=865 Score = 109 bits (120), Expect = 6e-19 Identities = 132/177 (75%), Gaps = 2/177 (1%) Strand=Plus/Minus Query 40687 AAAATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAAGCC 40746 || ||||| || || || || || |||||||| || || |||||| |||| || || | Sbjct 176 AAGATGCAGATCTTTGTCAAGACCCTCACGGGGAAGACAATCACCCTCGAGGTGGAGTCT 117 Query 40747 ACCGACAGCGTGCA-AACGCTCAAGGAAAAAATTCTCGACAAAGAGGGCATCCCCGCGGA 40805 |||||| | | | |||| ||||| || || | ||||| |||||||||||| | || Sbjct 116 TCCGACACCATCGACAACG-TCAAGTCCAAGATCCAGGACAAGGAGGGCATCCCCCCCGA 58 Query 40806 CCAGCAACGACTCATCTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGA 40862 |||||| |||||||||| || ||||| ||||| || || | |||||||| | ||| Sbjct 57 CCAGCAGCGACTCATCTTTGCTGGCAAGCAGCTCGAGGATGGCCGCACCCTGAGCGA 1 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 514871420599760