Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Fusarium_20tucumaniae_20[genbank_20GCA_5F001680725.1_202016-07-06] 54,001 sequences; 49,886,306 total letters Query= NC_003102.1 Length=139342 Score E Sequences producing significant alignments: (Bits) Value seq13449 316 2e-81 seq9934 181 9e-41 seq12608 116 3e-21 seq4691 89.7 5e-13 seq19757 87.8 2e-12 >seq13449 Length=2090 Score = 316 bits (350), Expect = 2e-81 Identities = 643/951 (68%), Gaps = 8/951 (1%) Strand=Plus/Plus Query 23027 GAGGCAAGATTGCATACGGCCACCTCGTCTTTGGACGTGTACTCTACAATTTCGGTACAT 23086 || ||||| ||||| || || ||||| || || |||||| | ||| ||||| || Sbjct 871 GAAGCAAGGTTGCAGACAGCAACCTCATCAGGGGCGCAGTACTCGATAATCTCGGTGCAG 930 Query 23087 AGATTG---CTACACTTTATCGTGCCCAAATTGCTCTGGTTGCTTTTTCGATTGCACGAA 23143 |||||| |||| || ||||||| || |||||||||| || || ||||| Sbjct 931 AGATTGGAGCTACGG---ATGGTGCCCAGGTTCTTCTGGTTGCTCTTGCGGTTGCAGTGG 987 Query 23144 TCCTTGTAGAGCATGTACGGCGTGCCCGTCTCGACCTGCGACTCGATGATCGCTCGCCAC 23203 ||||||||||||||| | || |||| |||||| ||||| ||||| ||| || ||| Sbjct 988 TCCTTGTAGAGCATGAAGGGGTTGCCGGTCTCGGTCTGCGCCTCGAGGATGGCATACCAG 1047 Query 23204 ATAGTCTGAGCGTGAACACGTCGCACGTACCT-GCCTTCTTCCTCGTACTTTTGGTACAA 23262 | |||| || | | ||| || ||| ||| | | ||| ||||||| ||| | Sbjct 1048 AGCTTCTGGGCCTTCATG-GTCTTGCGACCCTTGCCCGCCTTCTCATACTTTTCGTAAAG 1106 Query 23263 CGCGTCAAATTCGGCACCGTAACAGTCGGCCAGGCCGGGCGATTGCATCGGACACATGAG 23322 || || || || | || || ||||||||||| ||||| | | | ||||||||||| Sbjct 1107 AGCCTCGAACTCCTCGCCATAGCAGTCGGCCAGACCGGGGCACTCGTTGGGACACATGAG 1166 Query 23323 ACTCCACATTGAGTCATTTTCAACGCGTCTCATAAAAAGATCCGGTATCCATAGAGCGTA 23382 |||| || || || || || |||| || ||||| || ||||| ||||| Sbjct 1167 GGTCCAGTCACCGTTCTTCTCGACACGCTTCATGAAGAGATCGGGAATCCAGAGAGCCAG 1226 Query 23383 GAACAGTTCGCGGGCGCGCACCTCCTCTTTGCCGGTGTTCTTTTTCAAATCCAAAAAGTC 23442 |||||| ||||||||||| |||||||| |||||| |||||| || || | || || Sbjct 1227 GAACAGGTCGCGGGCGCGGACCTCCTCCTTGCCGTGGTTCTTGCGCAGGTCAAGGAACTC 1286 Query 23443 CAACACGTCCGCATGCCACGGCTCGAGGTAAACGGCAAACGCGCCCGGTCTCTTATTGCC 23502 || || || || ||||| ||||| ||||| | |||||| || || |||| ||| ||||| Sbjct 1287 AAAGACATCTGCGTGCCAGGGCTCAAGGTAGATGGCAAAGGCACCAGGTCGCTTGTTGCC 1346 Query 23503 GCCCTGATCGACGTAACGGGCCGTGTTGTTGTACACTCTTAGCATCGGCACGAGACCGTT 23562 ||||| |||||||| ||||| ||||||||| | || | ||||| || || |||||| Sbjct 1347 ACCCTGGTCGACGTACCGGGCAGTGTTGTTGAAGACACGAAGCATGGGGGTGACACCGTT 1406 Query 23563 GGACGCGCCGCCTACGCCCGCCACACTCGAACCTTTTGCTCGAACGTTGTGAACGTGGAA 23622 ||| | ||| || || | || || | || || | ||| |||| | Sbjct 1407 GGAGGTACCGTTGGTACCAGCGATGTAAGAGCCAGTGGCACGGATTCGGTGGACGTTCAG 1466 Query 23623 ACCTATGCCTCCGCCCGATTTCGATATCATCGCGCATTGTTTCAGAGTGTCGTAGATGCC 23682 || || || || || || || ||||| || || || ||||| || || || || Sbjct 1467 GCCGATACCACCCGCCATCTTGGAGATCATGGCACAGGTCTTGAGAGTATCATAAATACC 1526 Query 23683 CTCGATGCTGTCCTCTTTGGTCGCGACCAAGAAACACGAAGACATTTGCGCTTTGGGCGT 23742 ||| |||||||||||||| | |||||| ||| || || |||| || | | ||| || Sbjct 1527 CTCAATGCTGTCCTCTTTCATGTCGACCAGGAAGCATGAGGACAGCTGAGGCTGGGGAGT 1586 Query 23743 AGCGGCCGAGAACAGTGTCGGGCTGGCGTGCGTAAAGTATCCATTCGACATTAGATTGTA 23802 | | || ||| || || ||| ||| || || ||| || ||||||| || ||||| Sbjct 1587 ACCAGCATTGAAGAGGGTGGGGGAGGCATGGGTGAAGAATTTGCTCGACATCAGGTTGTA 1646 Query 23803 CGTGTCGATGGCGGCATCAATGTCCTCTCCGTGTATACCGATGGCGACGCGCATCATCAT 23862 || || | | | ||||| || || || || |||| | || ||||| ||||| Sbjct 1647 GGTCTCCAGGACACGCTCAATATCGTCACCCCAGATGCCGACAGACACACGCATGATCAT 1706 Query 23863 GTATTGAGGTCTCTCGACCGTGACGCCGTTAATTTTGAACAGATATGAACGTTGCATCGT 23922 || || || | ||| || | ||| | ||| |||| || || || || | | || Sbjct 1707 GTGCTGGGGACGCTCAACAATCTTGCCATCAATCTTGAGGAGGTAGGATCGCTCAAGAGT 1766 Query 23923 TTTAAATCCAAAATAGTCATAGTTAAAGTCACGATCGTGCACTATGGCCGA 23973 || || ||||| || | || | |||||||| || | || |||||||| Sbjct 1767 CTTGAAGCCAAAGTACTGGTATTGGAAGTCACGGTCATAGACAATGGCCGA 1817 Score = 114 bits (126), Expect = 1e-20 Identities = 333/510 (65%), Gaps = 7/510 (1%) Strand=Plus/Plus Query 22159 CATGCCCGTCTTCAGACCCATCTTCCACGCGTAAAAATGTATCGACGTCAATTTTCCATA 22218 ||||||||||||||| || | |||||| || ||| || || || | || || Sbjct 3 CATGCCCGTCTTCAGGCCGAGCTTCCAGCCGGCAAAGTGCATGCTGGTGATCTTGCCCAT 62 Query 22219 ACTCGGCAAGTCCATGTACACATTGAACGACTGACTCTGATCGATAAACGCTCCTCGATC 22278 | || | ||||| | |||| ||||| |||||| || || || ||||| || Sbjct 63 GGTGGGGTCCTTCATGTGGATGTTGAGGGACTGGGACTGATCAATGAAGGCACCTCGGTC 122 Query 22279 GGCGGCCATATTTATCAATGTACGCATCGACATTTCCCATACGGTCTTGTACAGTTGCCT 22338 ||| ||||| | | | ||| ||| || ||||| ||||||||||| || | | Sbjct 123 GGCAGCCATCTGAACGACCTGGCGCTGCGAAATCTCCCAGACGGTCTTGTAGAGGGCCTT 182 Query 22339 GATCTCTAACGGTATCGATTCGATCCTCTGGACGGACCCGTTATTGTGTATGATCAAATT 22398 || ||| || || ||| |||||| ||| ||||| | | ||||| || Sbjct 183 GACCTCGGCGGGGATGTTGGGGATGTTCTGGATGGAACCGTTCTCGGCAATGATTCGGTT 242 Query 22399 TTTAATCGTATCGTTCCACAAACCGATGGCGGTCAAATCTTTGACCAGATGACGGTTCAC 22458 ||| || | ||| ||||| || ||| | | || |||| ||| |||| || Sbjct 243 TTTCATGGCATCCGACCACAGGCCCATGTCAACAAGGTCCTTGAGCAGCCAGGGGTTGAC 302 Query 22459 CACTTGAAACTCGCCGGACAAGACGCGGCGTTGGTAAATGTTGGATGTGAACGGTTCGAA 22518 || || |||||||| | | ||| ||||| ||||| |||||||| ||| | || ||||| Sbjct 303 GACCTGGAACTCGCCAGCGAGGACACGGCGCTGGTAGATGTTGGAGGTGTAAGGCTCGAA 362 Query 22519 AGATTCATTGTTTCCCAGTATCTGAGCGGTCGAAGCGGTCGGCATCGGCGCCAACAGTAG 22578 | || ||||| ||||| ||||| | || || || ||||| || || | ||| || Sbjct 363 GCACTCGTTGTTGCCCAGGATCTGCGAAGTACTGGCAGTAGGCATAGGGGCAAGCAGCAG 422 Query 22579 CGAGTTTCTCAAGCCGTGCT--TTGAAATTTTACTCTTGAGCATCGACCAGTCCCACAGA 22636 ||| | | |||||||| |||| | | | ||| || ||||||||| || Sbjct 423 ACTGTTGCGAATGCCGTGCTCCTTGACCTGCT--CCCGGAGGTTCTCCCAGTCCCAGAGG 480 Query 22637 TCGGACGGCGTCACATTGTCCCACATATCG 22666 || || ||| ||||||| |||||| ||| Sbjct 481 TCAGAAGGCTTCACATT---CCACATGTCG 507 >seq9934 Length=2663 Score = 181 bits (200), Expect = 9e-41 Identities = 556/847 (66%), Gaps = 31/847 (4%) Strand=Plus/Minus Query 57564 CCAGACATTTGGAACATGTACAAAAAGGCAGAAGCATCGTTTTGGACCGTCGAAGAAGTA 57623 ||| | || ||| | |||||||| ||||| || || || || ||||| | ||| || | Sbjct 936 CCACAGATCTGGCAGATGTACAAGAAGGCCGAGGCCTCTTTCTGGACTGCCGAGGAGATT 877 Query 57624 GACCTGTCTAAGGATCTGAGCGATTGGGATTCCCTCAAAGAAT-CTGA-GAGAAATTTTA 57681 || | || |||||||| ||| ||| | || | || | | || ||| | || | Sbjct 876 GATTTATCCAAGGATCTCCACGACTGGAACAACCGCCT-GACTGCCGACGAGCAGTTCTT 818 Query 57682 --TTAAACACGTGTTGGCGTTTTTCGCCGCATCCGATGGTATTGTTAACGAGAATTTGGT 57739 | ||| | | || || ||||| ||||| || || || || |||||||| | || Sbjct 817 CGTCTCCCACATCCTCGCCTTCTTCGCTGCATCTGACGGCATCGTCAACGAGAACCTTGT 758 Query 57740 CGAAAGATTTTCACAAGAAGTGCAAGTGACGGAGGCGAGATGCTTTTACGGATTTCAAGT 57799 ||| |||| || || || | | ||||| ||||||| ||||| || || | Sbjct 757 CGAGCGATTCAGCGGCGAGGTCCAGATCCCCGAGGCCCGATGCTTCTACGGCTTCCAGAT 698 Query 57800 GGCCATTGAAAACGTGCATTCAGAAATGTATTCGCTACTCATCGATACGTACGTGAAGGA 57859 || || ||| | || || || | || ||||| ||||| || || ||| | ||||| Sbjct 697 CATGATGGAGAACATCCACTCCGAGACCTACTCGCTCCTCATTGACACCTACATCAAGGA 638 Query 57860 CAACGA-CGAGAAACGTAGACTGTTCAACGCGATCGAAACAATGCCCGCGATCGCCAAGA 57918 | | | ||| || || |||||||| || || || || ||| ||| ||||| Sbjct 637 GCCTGCTCAACGAACCTAC-CTCTTCAACGCCATTGAGACCATCCCCTGCATCCGCAAGA 579 Query 57919 AGGCAGAGTGGTCAATCAAATGGATAAAAAGCGCCACGGCCACGTTC---GCCGAGAGGC 57975 |||| || ||| | ||| |||||| | | || | | ||| | || || | | Sbjct 578 AGGCCGACTGGGCCATCCGATGGATCCAG---GACAAGAACTCGTCCTTTGCTCAGCGTC 522 Query 57976 TAATCGCGTTCGCCGCCGTCGAAGGTATATTCTTTTCGGGCAGCTTTGCGGCAATATTTT 58035 | |||| || || |||||||| ||||| ||||| || |||||| | || || | Sbjct 521 TCGTCGCTTTTGCTGCCGTCGAGGGTATCTTCTTCAGCGGTGCCTTTGCCTCCATCTTCT 462 Query 58036 GGATGAAGAAACGCGGCCTGATGCCCGGCCTGACGTTTAGCAACGAGTTGATATCGCGCG 58095 || | ||||| || ||||| ||||| |||||||| ||| ||||||| | || || || | Sbjct 461 GGCTCAAGAAGCGTGGCCTCATGCCTGGCCTGACCTTTTCCAACGAGCTCATCTCTCGTG 402 Query 58096 ACGAGGGTCTCCATACTGATTTTGCGTGCCTAATGTACTCTCACATTGTCAATAAACCG- 58154 |||||||||| || || || ||||| ||||| | |||| ||| |||| ||| Sbjct 401 ACGAGGGTCTTCACACCGACTTTGCATGCCTCCTCCACTCCCAC---CTCAA-GGGCCGT 346 Query 58155 ------ACGCGGGATCGCATCTTGGACATTATCACCGAGGCGGTCGCGATCGAAAATGAG 58208 | || || |||| |||||| |||||||| || ||| | || || | ||| Sbjct 345 GCCAGCAAGCAGG---TCATCCAGGACATCATCACCGATGCCGTCACCATTGAGCAGGAG 289 Query 58209 TTTGTCACCGAAGCCCTACCGGTGGCCATGCTCGGTATGAACAATGATTTGATGTCAAAG 58268 || | ||||| ||||| || ||| ||||||| |||||| || | ||| || Sbjct 288 TTCCTGACCGAGGCCCTCCCCTGCGCCCTGCTCGGCATGAACGCCGACCTCATGAAGCAG 229 Query 58269 TACATTGAGTTTGTTGCCGACAGACTTTTGCTCGAACT--GATTGGAGAGCGTCATTACA 58326 ||||| ||||| || |||||| | || | ||| || | |||| ||| |||| Sbjct 228 TACATCGAGTTCGTCGCCGACCGCCTCCTCGTCGCCCTCGGCAACGAGAAGGTC--TACA 171 Query 58327 ACACGAAAAATCCGTTTGATTTTATGAATCTGATCTCGCTCGAGGGCAAGACAAACTTTT 58386 | | | || || || || || ||| | ||||| |||| |||||||| ||||| | Sbjct 170 AGGCCACCAACCCCTTCGACTTCATGGAGAACATCTCCCTCGGTGGCAAGACCAACTTCT 111 Query 58387 TCGAAAA 58393 |||| || Sbjct 110 TCGAGAA 104 >seq12608 Length=1983 Score = 116 bits (128), Expect = 3e-21 Identities = 163/229 (71%), Gaps = 0/229 (0%) Strand=Plus/Plus Query 31193 ATGCAAATTTTCGTAAAGACTCTGACAGGCAAAACGATCACCGTCGACGTTGAACCGTCC 31252 ||||| || ||||| ||||| || || || || || |||||| | || || ||| ||||| Sbjct 392 ATGCAGATCTTCGTCAAGACCCTCACCGGAAAGACCATCACCCTTGAGGTGGAATCGTCC 451 Query 31253 GACAGTGTCGAAACGGTCAAACAGAGAATAGCGGACAAGGAAGGCGTGCCGCCCGACCAG 31312 |||| | || | || ||| || || ||||||||||||| | || || || || Sbjct 452 GACACCATTGACAATGTGAAATCGAAGATCCAGGACAAGGAAGGCATTCCTCCTGATCAA 511 Query 31313 CAGCGTCTAATATTCGCTGGCAAACAGTTGGAAGACTCTATGACTATGAGCGATTATAAC 31372 ||||| || || || || ||||| ||| | || ||| ||| | ||||| || ||| Sbjct 512 CAGCGACTCATCTTTGCCGGCAAGCAGCTCGAGGACGGCCGAACTCTCAGCGACTACAAC 571 Query 31373 ATTCAAAAAGAATCGACTCTTCATCTGGTACTTAGACTGAGGGGCGGTA 31421 || || || || |||||||| || ||||| ||| | ||| | || |||| Sbjct 572 ATCCAGAAGGAGTCGACTCTGCACCTGGTTCTTCGTCTGCGCGGTGGTA 620 Score = 87.8 bits (96), Expect = 2e-12 Identities = 156/228 (68%), Gaps = 0/228 (0%) Strand=Plus/Plus Query 31193 ATGCAAATTTTCGTAAAGACTCTGACAGGCAAAACGATCACCGTCGACGTTGAACCGTCC 31252 ||||| || || || |||||||| || || || || ||||| | || || || || | Sbjct 620 ATGCAGATCTTTGTCAAGACTCTCACTGGAAAGACCATCACTCTGGAGGTGGAGTCGAGC 679 Query 31253 GACAGTGTCGAAACGGTCAAACAGAGAATAGCGGACAAGGAAGGCGTGCCGCCCGACCAG 31312 || | | || | || || | || ||||||||| ||| | || || |||||| Sbjct 680 GATACCATTGACAACGTGAAGTCCAAGATTCAGGACAAGGAGGGCATCCCCCCTGACCAG 739 Query 31313 CAGCGTCTAATATTCGCTGGCAAACAGTTGGAAGACTCTATGACTATGAGCGATTATAAC 31372 ||||| || || || ||||| || ||| |||||||| | || || ||| || ||| Sbjct 740 CAGCGACTTATCTTTGCTGGTAAGCAGCTGGAAGACGGTCGTACCCTGTCCGACTACAAC 799 Query 31373 ATTCAAAAAGAATCGACTCTTCATCTGGTACTTAGACTGAGGGGCGGT 31420 || || || || ||||| |||||||| || || | || | |||||| Sbjct 800 ATCCAGAAGGAGTCGACCCTTCATCTTGTTCTCCGTCTCCGTGGCGGT 847 >seq4691 Length=3338 Score = 89.7 bits (98), Expect = 5e-13 Identities = 108/147 (73%), Gaps = 0/147 (0%) Strand=Plus/Plus Query 31201 TTTCGTAAAGACTCTGACAGGCAAAACGATCACCGTCGACGTTGAACCGTCCGACAGTGT 31260 |||||| ||||| ||||| ||||| || |||||| |||| || || | || |||| | Sbjct 1880 TTTCGTGAAGACCCTGACGGGCAAGACCATCACCCTCGAGGTCGAGTCCTCGGACACCAT 1939 Query 31261 CGAAACGGTCAAACAGAGAATAGCGGACAAGGAAGGCGTGCCGCCCGACCAGCAGCGTCT 31320 || | ||||| | || ||||||||| ||| | || || ||||||||||| || Sbjct 1940 TGACAATGTCAAGTCCAAGATCCAGGACAAGGAGGGCATCCCCCCGGACCAGCAGCGACT 1999 Query 31321 AATATTCGCTGGCAAACAGTTGGAAGA 31347 || ||||||||||| ||| |||| || Sbjct 2000 GATCTTCGCTGGCAAGCAGCTGGAGGA 2026 >seq19757 Length=865 Score = 87.8 bits (96), Expect = 2e-12 Identities = 114/158 (72%), Gaps = 0/158 (0%) Strand=Plus/Minus Query 31190 AACATGCAAATTTTCGTAAAGACTCTGACAGGCAAAACGATCACCGTCGACGTTGAACCG 31249 || ||||| || || || ||||| || || || || || |||||| |||| || || | Sbjct 176 AAGATGCAGATCTTTGTCAAGACCCTCACGGGGAAGACAATCACCCTCGAGGTGGAGTCT 117 Query 31250 TCCGACAGTGTCGAAACGGTCAAACAGAGAATAGCGGACAAGGAAGGCGTGCCGCCCGAC 31309 ||||||| |||| | ||||| | || ||||||||| ||| | || |||||| Sbjct 116 TCCGACACCATCGACAACGTCAAGTCCAAGATCCAGGACAAGGAGGGCATCCCCCCCGAC 57 Query 31310 CAGCAGCGTCTAATATTCGCTGGCAAACAGTTGGAAGA 31347 |||||||| || || || |||||||| ||| | || || Sbjct 56 CAGCAGCGACTCATCTTTGCTGGCAAGCAGCTCGAGGA 19 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 445465502107920