Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Fusarium_20tucumaniae_20[genbank_20GCA_5F001680725.1_202016-07-06] 54,001 sequences; 49,886,306 total letters Query= NC_008603.1 Length=321240 Score E Sequences producing significant alignments: (Bits) Value seq9934 134 3e-26 seq17333 116 8e-21 seq17170 109 1e-18 seq25230 105 1e-17 >seq9934 Length=2663 Score = 134 bits (148), Expect = 3e-26 Identities = 385/586 (66%), Gaps = 17/586 (3%) Strand=Plus/Plus Query 251563 TCGAAGAAATTAGACTTGCCCTCCAGAGAGATTAGCTCCATGAAGTCGAAGGGGTTTGTG 251622 |||||||| || | |||||| | || ||||| ||||||||||||||||||||| ||| Sbjct 107 TCGAAGAAGTTGGTCTTGCCACCGAGGGAGATGTTCTCCATGAAGTCGAAGGGGTTGGTG 166 Query 251623 GCATTGTACTGCTTGGGATGGCCAAGTGCTACGAAGATGCGGTCTGCCACAAACTCCAGA 251682 || ||||| ||| | ||| || || |||| || |||||| || || ||||| | Sbjct 167 GCCTTGTAGACCTTCTCGTTGCCGAGGGCGACGAGGAGGCGGTCGGCGACGAACTCGATG 226 Query 251683 TACTGTCCCATCAGTTCAGAGTTCATGCCAATCATACGACAAGGAATTGCCTCACAGATG 251742 ||||| ||| || || | ||||||||| | || || || | ||||| | | Sbjct 227 TACTGCTTCATGAGGTCGGCGTTCATGCCGAGCAGGGCGCAGGGGAGGGCCTCGGTCAGG 286 Query 251743 AATTCCTTTTCGTTGGCAACTGCCTCCTCCACAATTGCCT---TCACCTG-TGCCAGAGA 251798 || |||| || ||| || || || | || ||| | ||||| | | | | Sbjct 287 AACTCCTGCTCAATGGTGACGGCATCGGTGATGATGTCCTGGATGACCTGCTTGCTGGCA 346 Query 251799 CAGCTTGTTCTCCAGCTTTGAGTACAGGAGCTCGCCAAACTGTTGGTGCAGACCCTCGTC 251858 | || || || | |||| ||||| |||| | ||| ||||||||||| Sbjct 347 CGGC----CCTTGAGGTGGGAGTGGAGGAGGCATGCAAAGTCGGTGTGAAGACCCTCGTC 402 Query 251859 GCGACTGATGAACTCGTTGGACAGACCCAGGCCAGGCATCACCCCACGGTTCCTGAGCCA 251918 ||| ||||| ||||||||| | |||||||||||| | ||||| ||| ||||||| Sbjct 403 ACGAGAGATGAGCTCGTTGGAAAAGGTCAGGCCAGGCATGAGGCCACGCTTCTTGAGCCA 462 Query 251919 GAAGATTGCGCAAAAGGATCCAGAGAACAGCAGACCCTCGACACACACCCATGCAACAAG 251978 |||||| | | ||||| || ||| | | ||||||||| | | || || || Sbjct 463 GAAGATGGAGGCAAAGGCACCGCTGAAGAAGATACCCTCGACGGCAGCAAAAGCGACGAG 522 Query 251979 GCGCTCAGCAAACGA------CTTGTCCTGCGACAAGAACTTCTGTGCCCATGCTGCCTT 252032 |||| |||||| || ||||||||| || | | || ||||| | ||||| Sbjct 523 ACGCTGAGCAAAGGACGAGTTCTTGTCCTG-GA-TCCATCGGATG-GCCCAGTCGGCCTT 579 Query 252033 CTTTCCAACCGCGGGGATTGTTTCGATTGCATCAAAGAGAGAGTTCCGCTCGGCATCGTC 252092 ||| | | |||||| || || || || | ||||| || | || | ||| || Sbjct 580 CTTGCGGATGCAGGGGATGGTCTCAATGGCGTTGAAGAGGTAGGTTCGTTGAGCAGGCTC 639 Query 252093 CTCGATGAGCGCATCAAGCAGGAGAGAGTACATCTCCGAATGGATG 252138 || |||| | |||| ||||| ||||| |||| || |||||| Sbjct 640 CTTGATGTAGGTGTCAATGAGGAGCGAGTAGGTCTCGGAGTGGATG 685 >seq17333 Length=1598 Score = 116 bits (128), Expect = 8e-21 Identities = 178/251 (71%), Gaps = 2/251 (1%) Strand=Plus/Plus Query 279316 AGGACGAAGCAGAGAAGGAGACTGAGCCAGGTGAGGATCTGTGTGACTGTGATTTCTCGC 279375 ||| ||| || ||| |||| ||| ||||||||||| || ||||| |||||| | Sbjct 1017 AGGCCGAGGCCGAGGAGGATGAGGAGGAGGGTGAGGATCTTTGCAACTGTACTTTCTCTC 1076 Query 279376 TCGCATATGGTGGGAAGATTCTGCTAAACTCTACCCGCCTCAACATCAAGCGTGGCAACC 279435 | || || |||| ||||||||||| ||| || | |||| | ||||||||||| | | Sbjct 1077 TTGCCTACGGTGCCAAGATTCTGCTCAACCAGACTCACCTCCGCCTCAAGCGTGGCCAGC 1136 Query 279436 GGTATGGTCTCATCGGTCCCAATGGAGCGGGTAAGAGCACTCTAATGCGCGCCATTGCAA 279495 | || ||||| ||||||||| || | || ||| |||||| ||||| ||||| | Sbjct 1137 GCTACGGTCTTTGCGGTCCCAACGGTTCCGGCAAGTCCACTCTCATGCGTGCCATCAACA 1196 Query 279496 ACGGTCAGCTGGAAGGATTTCCTAACGCA-TCTGAGGTAAGGACAGTGTATGTAGAGCAC 279554 ||| ||| | | ||| ||||| | ||| ||||| | ||| || | || |||||| Sbjct 1197 ACGAGCAGGTTG-AGGGTTTCCCCAAGCAGAGCGAGGTCAAGACCGTCTTCGTCGAGCAC 1255 Query 279555 GACATCGACTC 279565 ||| | ||||| Sbjct 1256 GACCTGGACTC 1266 >seq17170 Length=1518 Score = 109 bits (120), Expect = 1e-18 Identities = 165/232 (71%), Gaps = 2/232 (1%) Strand=Plus/Minus Query 280160 CTCACGGATTGGTGTCATTGGACCCAATGGTGCGGGTAAGTCTACCCTAATCAAAGTCCT 280219 ||| || |||| ||||| || ||||| ||||| || ||||| ||||| ||||| ||||| Sbjct 1172 CTCCCGTATTGCCGTCATCGGTCCCAACGGTGCCGGAAAGTCCACCCTCATCAACGTCCT 1113 Query 280220 GACTGGCGAGACCCAGGCCACTGAGGGGTCCGTTTGGAAGCATCCCAACATGCGGATGGC 280279 ||||| ||| | |||| ||||| | | |||| ||||| || || || Sbjct 1112 CACTGGTGAGCTCATCCCCACCGAGGGTGAGATCTACCAGCACGAGAACATCCGTATCGC 1053 Query 280280 TTACGTCGCTCAGCACGCTTTCCACCACATCGAGAACCACCTGGACATGACTCCTAACCA 280339 ||| || |||||||||||| |||||||| ||||||||||||| ||| || | | Sbjct 1052 CTACATCAAGCAGCACGCTTTCGCTCACATCGATAACCACCTGGACAAGACCCCCTCCGA 993 Query 280340 ATACATTCAGTGGCGCTATGCA-AGTGGGCAGGATCTGGAGTCGGTGGATCG 280390 ||||| |||||||| | | || | ||| |||||| ||| | |||| || Sbjct 992 GTACATCCAGTGGCGAT-TCCAGACTGGTGAGGATCGTGAGACCATGGACCG 942 >seq25230 Length=710 Score = 105 bits (116), Expect = 1e-17 Identities = 190/278 (68%), Gaps = 0/278 (0%) Strand=Plus/Plus Query 279706 TGTCGGGTGGTTGGAAGATGAAGCTGGCCCTCACTCGCGCCATTCTACTGCGTGCCGATG 279765 |||| ||||||||||||||||||||||| || | || ||||| || | |||||| |||| Sbjct 433 TGTCTGGTGGTTGGAAGATGAAGCTGGCTCTAGCCCGAGCCATGCTTCAGCGTGCTGATG 492 Query 279766 TCCTACTGCTTGATGAGCCAACCAACCACATGGACACCACCAACGTAGCCTGGCTAGTGT 279825 |||| || || || || || |||||||| | || ||||| | || ||||| | | Sbjct 493 TCCTTCTCCTGGACGAACCTACCAACCATCTTGATGTTGCCAACATTGCGTGGCTCGAGA 552 Query 279826 CCTACCTAACCAGTCTGAAGAATGTTTCTTCCCTCATTGTCTCTCACGACTCTGGCTTCC 279885 |||||| | | || || | | || ||||| ||||||||||||||||||| Sbjct 553 ACTACCTCAAGACTCATCCCGATATCACCAGTCTGATTGTTTCTCACGACTCTGGCTTCC 612 Query 279886 TAGATGCCGTGTGCTCTGCCATCATTCACTATGAGCAAAATCTGAAGCTCTCCAAGCACA 279945 | || ||| | | | |||| ||||| |||| || |||||| | ||| Sbjct 613 TCGACAACGTCACCACCGACATCTACCACTACGAGCCCAACAAGAAGCTGGCTTGCTACA 672 Query 279946 TCGGCAACCTGTCTGCTTTCGTGGCAAAGCGCCCTGAG 279983 ||||||||| | || || || | | ||||| ||| Sbjct 673 AGGGCAACCTGGCCGCCTTTGTCGAGATCCGCCCCGAG 710 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1027125652244841