Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Fusarium_20tucumaniae_20[genbank_20GCA_5F001680725.1_202016-07-06] 54,001 sequences; 49,886,306 total letters Query= NC_011345.1 Length=155122 Score E Sequences producing significant alignments: (Bits) Value seq12608 125 7e-24 seq9934 107 2e-18 >seq12608 Length=1983 Score = 125 bits (138), Expect = 7e-24 Identities = 166/228 (73%), Gaps = 2/228 (1%) Strand=Plus/Minus Query 138388 CCGCCTCGCAAACGCAAAACTAAATGTATGTTTGACTCCTTTTGAATGTTGTAGTCGCTC 138447 || || |||| ||| | ||| | || | | |||||||| || |||||||||||||| Sbjct 618 CCACCGCGCAGACGAAGAACCAGGTGCAGAGTCGACTCCTTCTGGATGTTGTAGTCGCTG 559 Query 138448 ATAGTACGCGAGTCCTCGAGTTGTTTACCGGAATAGATTAGACGCTGTTGGTCCGGAGGT 138507 | ||| || ||||||||| || || |||| | |||| || |||||||| || ||||| Sbjct 558 AGAGTTCGGCCGTCCTCGAGCTGCTTGCCGGCAAAGATGAGTCGCTGTTGATCAGGAGGA 499 Query 138508 ATACCTTCTTTGTCGGTGATTTTTTGTTTTA-ATTGTTCCACGGTGTCGGTCGACTCCAC 138566 || ||||| ||||| ||| || ||| | |||| || | |||||||| ||| ||||| Sbjct 498 ATGCCTTCCTTGTCCTGGATCTTCGATTTCACATTG-TCAATGGTGTCGGACGATTCCAC 440 Query 138567 CTCGACCGTCAGCGTTTTACCAGTCAGAGTTTTTACAAAAATCTGCAT 138614 ||| | || | || || || || || || || || || |||||||| Sbjct 439 CTCAAGGGTGATGGTCTTTCCGGTGAGGGTCTTGACGAAGATCTGCAT 392 Score = 120 bits (132), Expect = 3e-22 Identities = 166/229 (72%), Gaps = 4/229 (2%) Strand=Plus/Minus Query 138388 CCGCCTCGCAAACGCAAAACTAAATGTATGTTTGACTCCTTTTGAATGTTGTAGTCGCTC 138447 ||||| || | ||| | ||| | ||| | | | |||||||| || |||||||||||| | Sbjct 846 CCGCCACGGAGACGGAGAACAAGATGAAGGGTCGACTCCTTCTGGATGTTGTAGTCGGAC 787 Query 138448 ATAGTACGCGAGTCCTCGAGTTGTTTACCGGAATAGATTAGACGCTGTTGGTCCGGAGGT 138507 | ||||| ||| || || || ||||| | | |||| || ||||| ||||| || || Sbjct 786 AGGGTACGACCGTCTTCCAGCTGCTTACCAGCAAAGATAAGTCGCTGCTGGTCAGGGGGG 727 Query 138508 ATACCTTCTTTGTCGGTGATTTTTTGTTTTAA--TTGTTCCACGGTGTCGGTCGACTCCA 138565 || || || ||||| ||| | || | || | ||| || | ||| ||| ||||||||| Sbjct 726 ATGCCCTCCTTGTC-CTGAATCTTGGACTTCACGTTG-TCAATGGTATCGCTCGACTCCA 669 Query 138566 CCTCGACCGTCAGCGTTTTACCAGTCAGAGTTTTTACAAAAATCTGCAT 138614 |||| | || | || || ||||| ||||| || ||||| |||||||| Sbjct 668 CCTCCAGAGTGATGGTCTTTCCAGTGAGAGTCTTGACAAAGATCTGCAT 620 Score = 84.2 bits (92), Expect = 2e-11 Identities = 129/184 (70%), Gaps = 0/184 (0%) Strand=Plus/Minus Query 138419 TTGACTCCTTTTGAATGTTGTAGTCGCTCATAGTACGCGAGTCCTCGAGTTGTTTACCGG 138478 |||||||||| ||||||||||||||| | || || ||||| || || || |||| Sbjct 359 TTGACTCCTTCTGAATGTTGTAGTCGGCGAGGGTGCGGCCATCCTCAAGCTGCTTGCCGG 300 Query 138479 AATAGATTAGACGCTGTTGGTCCGGAGGTATACCTTCTTTGTCGGTGATTTTTTGTTTTA 138538 | || || ||||| ||||| ||||| ||||| || || || ||| || || | Sbjct 299 CGAAAATCAGGCGCTGCTGGTCAGGAGGAATACCCTCCTTATCTTGGATCTTCGACTTGA 240 Query 138539 ATTGTTCCACGGTGTCGGTCGACTCCACCTCGACCGTCAGCGTTTTACCAGTCAGAGTTT 138598 | || | ||||||| ||||||||||||| || | || |||||||| || || | Sbjct 239 CGTTGTCGATCGTGTCGGAAGACTCCACCTCGAGGGTGATAGTCTTACCAGTGAGGGTCT 180 Query 138599 TTAC 138602 | || Sbjct 179 TGAC 176 >seq9934 Length=2663 Score = 107 bits (118), Expect = 2e-18 Identities = 283/427 (66%), Gaps = 19/427 (4%) Strand=Plus/Minus Query 52419 GTCGAGGGCGTGtttttttCCGGCAGCTTTGCCGCCATCTTTTACATTAAAACGAAAGGC 52478 |||||||| | || || ||| ||||||| ||||||| | | || | | ||| Sbjct 504 GTCGAGGGTATCTTCTTCAGCGGTGCCTTTGCCTCCATCTTCTGGCTCAAGAAGCGTGGC 445 Query 52479 ATAATGCCCGGCCTGACGTTCAGCAACGAGTTGATATCGCGCGACGAAGGACTGCACACG 52538 | ||||| |||||||| || ||||||| | || || || ||||| || || ||||| Sbjct 444 CTCATGCCTGGCCTGACCTTTTCCAACGAGCTCATCTCTCGTGACGAGGGTCTTCACACC 385 Query 52539 GACTTTGCGTGCCTCT---ACTACAAG----ACGCGCGTGACCGAAAAATTGGATTCGGA 52591 |||||||| |||||| ||| | | | | |||| | | || | | || Sbjct 384 GACTTTGCATGCCTCCTCCACTCCCACCTCAAGGGCCGTGCCAGCAA----GCA---GGT 332 Query 52592 CACGATCCTGAGCATGTTCAAGGAGGCGGTGGCTATCGAAAAGGAGTTTTTTACGGCCGC 52651 || ||| | ||| ||| || || || | || || ||||||| | || | || Sbjct 331 CA---TCCAGGACATCATCACCGATGCCGTCACCATTGAGCAGGAGTTCCTGACCGAGGC 275 Query 52652 GCTGCCGGTCGAGCTGCTGGGCATGAACGCGCAGTCCATGTGCGAGTACATCGAGTTTGT 52711 || || || ||||| ||||||||||| | |||| ||||||||||||| || Sbjct 274 CCTCCCCTGCGCCCTGCTCGGCATGAACGCCGACCTCATGAAGCAGTACATCGAGTTCGT 215 Query 52712 GGCGGATCGTCTGTTGGTGCAGCTCGGGCAGCCA-AAGTACTTCAACGCTCGCAATCCGT 52770 || || || || | || ||||| || | | ||| || ||| || ||| || | Sbjct 214 CGCCGACCGCCTCCTCGTCGCCCTCGG-CAACGAGAAGGTCTACAAGGCCACCAACCCCT 156 Query 52771 TTGAGTTTATGAACAACATTTCGCTTGAGGGCAAGACCAACTTTTTCGAGAAGCGAGTCG 52830 | || || ||| | ||||| || || | |||||||||||||| ||||||||||| |||| Sbjct 155 TCGACTTCATGGAGAACATCTCCCTCGGTGGCAAGACCAACTTCTTCGAGAAGCGTGTCG 96 Query 52831 GCGAGTA 52837 | || || Sbjct 95 GTGACTA 89 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 495927416676720