Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Fusarium_20tucumaniae_20[genbank_20GCA_5F001680725.1_202016-07-06] 54,001 sequences; 49,886,306 total letters Query= NC_014767.1 Length=184095 Score E Sequences producing significant alignments: (Bits) Value seq17274 131 2e-25 seq9934 109 6e-19 seq18506 86.0 7e-12 >seq17274 Length=1542 Score = 131 bits (144), Expect = 2e-25 Identities = 262/379 (69%), Gaps = 22/379 (6%) Strand=Plus/Plus Query 11588 TGTCGAAACCGTCCATTTCTGTGAGAAGCTGGTTGATCGTCTGTTCACGCTCATCGTTGG 11647 ||| |||||||||||| || || |||| |||||| | ||| || ||||| |||||| Sbjct 12 TGTTGAAACCGTCCATCTCGGTCAGAATCTGGTTCAGAGTCGCCTCCCGCTCGTCGTTGC 71 Query 11648 AGGGCATACCACCTGCCGAACGCTTCTTAC-----CGACA----GCGTCAATCTCATCGA 11698 | ||| || ||| || || || | |||| ||||| |||||||||| Sbjct 72 CACCGAAACC-CCGGCC--ACTCTCCTGTCGCGCTCGACCAATGGCGTCGATCTCATCGA 128 Query 11699 TGAATACGATACACGGTTGGTTGGCACGTGCCTGTTCGAAAAGTTCACGTACACGCTTCG 11758 | || | ||| || || ||| ||| | | |||| || || || ||||| | Sbjct 129 TAAAGATGATGCAAGGAGCGTTCTTACGGCCTTCGGCGAACAGGTCTCGCACACGGGAAG 188 Query 11759 CTCCAACACCTACGAACATCTCAACGAAGTTTG--CGGCAGAACACTGAATGAAGGGAAC 11816 |||||||| || |||||||| ||||| | | | || | ||||||| |||||| || Sbjct 189 GACCAACACCAACAAACATCTCGACGAATTCAGAACCGCTCA-CACTGAA-GAAGGGGAC 246 Query 11817 ATTAGACTCACCAGCGATGGCTCGAGCGAGGAGAGTCTTACCCGTACCAGGTGCACCAGC 11876 |||||| ||||| | || ||||| | ||||||||||||||||| | ||||| Sbjct 247 TCCAGACTCGCCAGCTGTAGCCTTGGCGAGCAATGTCTTACCCGTACCAGGGGGGCCAGC 306 Query 11877 GAGAAGGGCGCCACGGGGGATCTTGGCACC--ACTTC-CAAAGTAGCGCTCAGGCTTCTT 11933 |||| ||| || ||||| ||||||||||| |||| |||| | ||| |||| ||| Sbjct 307 CAGAATGGCTCCTCGGGGAATCTTGGCACCGAGCTTCTCAAACT---TCTCGGGCTGCTT 363 Query 11934 GAGGAAGTCCACAATCTCC 11952 |||||| ||||| |||| Sbjct 364 CAGGAAGCTCACAAACTCC 382 >seq9934 Length=2663 Score = 109 bits (120), Expect = 6e-19 Identities = 201/289 (70%), Gaps = 7/289 (2%) Strand=Plus/Plus Query 119508 TGAAGCCCTTCATCCCGAGAGATGAGCTCATTACTGAAGCAAAGTCCAGGCATGAGTCCT 119567 ||||| || || || |||||||||||||| || ||| || ||||||||||| || Sbjct 389 TGAAGACCCTCGTCACGAGAGATGAGCTCGTTGGAAAAGGTCAGGCCAGGCATGAGGCCA 448 Query 119568 CTTTTCTTTAGCCAAAAGATGGCACAAAAACTTCCAGAAAAGAAGATGCCCTCCACACAG 119627 | ||||| ||||| ||||||| ||| || |||||||| ||||| || Sbjct 449 CGCTTCTTGAGCCAGAAGATGGAGGCAAAGGCACCGCTGAAGAAGATACCCTCGACGGCA 508 Query 119628 GCGAAAGCGAATAGACGCTCAGCAAAAGGTCGAG-ACTTGTC---GAACCACTTGAGAGC 119683 || ||||||| ||||||| ||| ||||| |||| |||||| || ||| || || Sbjct 509 GCAAAAGCGACGAGACGCTGAGC-AAAGGACGAGTTCTTGTCCTGGATCCATCGGATGGC 567 Query 119684 CCAGTTGGCCTTACGCTCTATGCAGGGGACAGTTTGGATGGCTTCGAA-AAGTTGCTTCT 119742 ||||| |||||| |||||||||| || | ||||| | ||| | || | ||| Sbjct 568 CCAGTCGGCCTTCTTGCGGATGCAGGGGATGGTCTCAATGGCGTTGAAGAGGTAGGTTC- 626 Query 119743 TTTCAGCACCATCCTTAATATATTTATCAATGAGTTTAGAGTAGGTCTC 119791 || |||| ||||| || || | |||||||| ||||||||||| Sbjct 627 GTTGAGCAGGCTCCTTGATGTAGGTGTCAATGAGGAGCGAGTAGGTCTC 675 >seq18506 Length=1636 Score = 86.0 bits (94), Expect = 7e-12 Identities = 213/321 (66%), Gaps = 2/321 (1%) Strand=Plus/Minus Query 11683 GCGTCAATCTCATCGATGAATACGATACACGGTTGGTTGGCACGTGCCTGT-TCGAAAAG 11741 ||||||| ||||||||| || || || || |||| || || | | | ||| || Sbjct 1315 GCGTCAAGCTCATCGATAAAGACAATTGCAGGAGACTTGG-ACTTGGCAGCGTTGAAGAG 1257 Query 11742 TTCACGTACACGCTTCGCTCCAACACCTACGAACATCTCAACGAAGTTTGCGGCAGAACA 11801 || || || ||||| ||||| ||||| || || ||||| | || | |||| Sbjct 1256 CTCGCGAACTCGCTTGGCTCCGACACCCACAAAGATCTCGTCAAACTCGCTACCAGACAT 1197 Query 11802 CTGAATGAAGGGAACATTAGACTCACCAGCGATGGCTCGAGCGAGGAGAGTCTTACCCGT 11861 | | ||||||||| | ||| ||||| | |||||| || || |||||||| || || Sbjct 1196 GTAGAAGAAGGGAACTCCGGCCTCGCCAGCAACGGCTCGGGCAAGAAGAGTCTTTCCGGT 1137 Query 11862 ACCAGGTGCACCAGCGAGAAGGGCGCCACGGGGGATCTTGGCACCACTTCCAAAGTAGCG 11921 ||| || | ||| | || || | || ||| | |||||||||| | | | Sbjct 1136 ACCGGGAGGGCCAACCAGGAGAACACCCTTGGGCAGCTTGGCACCAAGGTCGCTGAACTT 1077 Query 11922 CTCAGGCTTCTTGAGGAAGTCCACAATCTCCTCAAGTTCCTCCTTGGCGGAGTCGATACC 11981 || || |||||||| || || || | ||||| || ||||||||||| |||| || Sbjct 1076 TTCGGGGTTCTTGAGAAACTCGACCACCTCCTGGAGCTCCTCCTTGGCCTCGTCGCAGCC 1017 Query 11982 CTCAACATCGGTGAAACGAGT 12002 | |||||| |||| || || Sbjct 1016 GTGGACATCGCTGAATCGTGT 996 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 588578433837800