Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Fusarium_20tucumaniae_20[genbank_20GCA_5F001680725.1_202016-07-06] 54,001 sequences; 49,886,306 total letters Query= NC_015326.1 Length=346754 Score E Sequences producing significant alignments: (Bits) Value seq12608 154 3e-32 seq4691 125 2e-23 seq19757 105 1e-17 seq13449 84.2 5e-11 >seq12608 Length=1983 Score = 154 bits (170), Expect = 3e-32 Identities = 160/210 (76%), Gaps = 0/210 (0%) Strand=Plus/Minus Query 194931 AACAAGGTGAAGAGTGGACTCTTTTTGAATATTGTAATCGGCAAGAGTTCTCCCATCTTC 194990 ||| ||||| ||||| ||||| || || || ||||| ||| ||||||| || || || Sbjct 601 AACCAGGTGCAGAGTCGACTCCTTCTGGATGTTGTAGTCGCTGAGAGTTCGGCCGTCCTC 542 Query 194991 GAGCTGCTTACCTGCGAAGATAAGTCGTTGTTGGTCTGGAGGAATGCCTTCTTTGTCTTG 195050 ||||||||| || || ||||| ||||| ||||| || |||||||||||||| ||||| || Sbjct 541 GAGCTGCTTGCCGGCAAAGATGAGTCGCTGTTGATCAGGAGGAATGCCTTCCTTGTCCTG 482 Query 195051 AATTTTTTGCTTGACGTTCTCAATGGTGTCCGAACTTTCCACTTCAAGGGTAACCGTCTT 195110 || || || || || ||||||||||| || |||||| |||||||| | ||||| Sbjct 481 GATCTTCGATTTCACATTGTCAATGGTGTCGGACGATTCCACCTCAAGGGTGATGGTCTT 422 Query 195111 TCCTGTCAAAGTTTTTACGAACACTTGCAT 195140 ||| || | || || ||||| | ||||| Sbjct 421 TCCGGTGAGGGTCTTGACGAAGATCTGCAT 392 Score = 132 bits (146), Expect = 1e-25 Identities = 158/213 (74%), Gaps = 6/213 (3%) Strand=Plus/Minus Query 194931 AACAAGGTGAAGAGTGGACTCTTTTTGAATATTGTAATCGGCAAGAGTTCTCCCATCTTC 194990 |||||| ||||| || ||||| || || || ||||| |||| || || | || ||||| Sbjct 829 AACAAGATGAAGGGTCGACTCCTTCTGGATGTTGTAGTCGGACAGGGTACGACCGTCTTC 770 Query 194991 GAGCTGCTTACCTGCGAAGATAAGTCGTTGTTGGTCTGGAGGAATGCCTTCTTTGTCTTG 195050 ||||||||||| || ||||||||||| || ||||| || || ||||| || ||||| || Sbjct 769 CAGCTGCTTACCAGCAAAGATAAGTCGCTGCTGGTCAGGGGGGATGCCCTCCTTGTCCTG 710 Query 195051 AATTTTTTGCTTGACGTTCTCAATGGTGTC---CGAACTTTCCACTTCAAGGGTAACCGT 195107 ||| || ||| ||||| |||||||| || ||| ||||| || || || | || Sbjct 709 AATCTTGGACTTCACGTTGTCAATGGTATCGCTCGA---CTCCACCTCCAGAGTGATGGT 653 Query 195108 CTTTCCTGTCAAAGTTTTTACGAACACTTGCAT 195140 |||||| || | ||| || || || | ||||| Sbjct 652 CTTTCCAGTGAGAGTCTTGACAAAGATCTGCAT 620 >seq4691 Length=3338 Score = 125 bits (138), Expect = 2e-23 Identities = 135/179 (75%), Gaps = 0/179 (0%) Strand=Plus/Minus Query 194953 TTTTGAATATTGTAATCGGCAAGAGTTCTCCCATCTTCGAGCTGCTTACCTGCGAAGATA 195012 || || || ||||| |||| ||| |||| ||||| || |||||||| || |||||||| Sbjct 2059 TTCTGGATGTTGTAGTCGGAAAGGGTTCGGCCATCCTCCAGCTGCTTGCCAGCGAAGATC 2000 Query 195013 AGTCGTTGTTGGTCTGGAGGAATGCCTTCTTTGTCTTGAATTTTTTGCTTGACGTTCTCA 195072 ||||| || ||||| || || ||||| || ||||| || || || |||||| || ||| Sbjct 1999 AGTCGCTGCTGGTCCGGGGGGATGCCCTCCTTGTCCTGGATCTTGGACTTGACATTGTCA 1940 Query 195073 ATGGTGTCCGAACTTTCCACTTCAAGGGTAACCGTCTTTCCTGTCAAAGTTTTTACGAA 195131 ||||||||||| || || || ||||| | ||||| || |||| || || ||||| Sbjct 1939 ATGGTGTCCGAGGACTCGACCTCGAGGGTGATGGTCTTGCCCGTCAGGGTCTTCACGAA 1881 >seq19757 Length=865 Score = 105 bits (116), Expect = 1e-17 Identities = 118/158 (75%), Gaps = 0/158 (0%) Strand=Plus/Plus Query 194983 CCATCTTCGAGCTGCTTACCTGCGAAGATAAGTCGTTGTTGGTCTGGAGGAATGCCTTCT 195042 ||||| ||||||||||| || || ||||| ||||| || ||||| || || ||||| || Sbjct 16 CCATCCTCGAGCTGCTTGCCAGCAAAGATGAGTCGCTGCTGGTCGGGGGGGATGCCCTCC 75 Query 195043 TTGTCTTGAATTTTTTGCTTGACGTTCTCAATGGTGTCCGAACTTTCCACTTCAAGGGTA 195102 ||||| || || || ||||||||| || |||||||| ||| ||||| || ||||| Sbjct 76 TTGTCCTGGATCTTGGACTTGACGTTGTCGATGGTGTCGGAAGACTCCACCTCGAGGGTG 135 Query 195103 ACCGTCTTTCCTGTCAAAGTTTTTACGAACACTTGCAT 195140 | ||||| || || | || || || || | ||||| Sbjct 136 ATTGTCTTCCCCGTGAGGGTCTTGACAAAGATCTGCAT 173 >seq13449 Length=2090 Score = 84.2 bits (92), Expect = 5e-11 Identities = 182/267 (68%), Gaps = 8/267 (3%) Strand=Plus/Minus Query 160599 TCTGGACTTCCGATCTTTTCATGAAGAGAGTGAAAGACAATGGGGATTGGAGCCTTTTCT 160658 |||||| | ||||||| ||||||||| | || | | || || || |||| ||| | | Sbjct 1219 TCTGGATTCCCGATCTCTTCATGAAGCGTGTCGAGAAGAACGGTGACTGGACCCTCATGT 1160 Query 160659 GTCCCAATGAAGCGCCTGGACTTGATGATGTTTATGGTTCCGAGTTCGAGACTCTTTATG 160718 ||||||| || || || || | || ||||| ||||||||| ||||||| | Sbjct 1159 GTCCCAACGAGTGCCCCGGTCTGGCCGACTGCTATGGCGAGGAGTTCGAGGCTCTTTACG 1100 Query 160719 AAAGATACGAAAAAGAGGG-AAGAGCCAAAAAGGTCGTGAAGGCCCAAGAACTGTGGCAT 160777 ||| || || || | ||| ||| | | || | | |||||||||| | || ||| || Sbjct 1099 AAAAGTATGAGAAGGCGGGCAAGGGTCGCAA-GACCATGAAGGCCCAGAAGCTCTGGTAT 1041 Query 160778 CACATCCTTGTCGCCCAAGTCGAGGTGGGTATGCCCTTTATCGCATACAAGGATGCCATC 160837 |||||| | || || |||| || | ||||| || |||||||| ||| | Sbjct 1040 GCCATCCTCGAGGCGCAGACCGAGACCGGCAACCCCTTCATGCTCTACAAGGA--CCA-C 984 Query 160838 TGT---CGCAAGAGTAACCAGAAGAAC 160861 || |||||||| |||||||||||| Sbjct 983 TGCAACCGCAAGAGCAACCAGAAGAAC 957 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1108713963202767