Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Fusarium_20tucumaniae_20[genbank_20GCA_5F001680725.1_202016-07-06] 54,001 sequences; 49,886,306 total letters Query= NC_015398.1 Length=101487 Score E Sequences producing significant alignments: (Bits) Value seq12608 113 3e-20 seq4691 98.7 6e-16 seq19757 86.0 4e-12 >seq12608 Length=1983 Score = 113 bits (124), Expect = 3e-20 Identities = 140/192 (73%), Gaps = 0/192 (0%) Strand=Plus/Minus Query 34791 TCTTTCTGAATGTTATAGTCCGAAAGGCTTCGTTCATCATCCAGCTGTTTTCCGGCAAAT 34850 || ||||| ||||| ||||| || ||| | || | || |||||||| || || ||||| Sbjct 810 TCCTTCTGGATGTTGTAGTCGGACAGGGTACGACCGTCTTCCAGCTGCTTACCAGCAAAG 751 Query 34851 ATTAGTCGTTGCTGGTCTTGCGGCACCCCCTCCTTGTCGCTAATCTTCTGTTTGACGGAT 34910 || ||||| |||||||| | || | ||||||||||| |||||| || ||| Sbjct 750 ATAAGTCGCTGCTGGTCAGGGGGGATGCCCTCCTTGTCCTGAATCTTGGACTTCACGTTG 691 Query 34911 GCTATCGATTCACCGGCCTCAACATCGACGGTTATGGTTTTTCCCGTGAGAGTCTTCACA 34970 | || | || | | ||| || || | || ||||| ||||| ||||||||||| ||| Sbjct 690 TCAATGGTATCGCTCGACTCCACCTCCAGAGTGATGGTCTTTCCAGTGAGAGTCTTGACA 631 Query 34971 AAGATCTGCATA 34982 |||||||||||| Sbjct 630 AAGATCTGCATA 619 >seq4691 Length=3338 Score = 98.7 bits (108), Expect = 6e-16 Identities = 129/179 (72%), Gaps = 0/179 (0%) Strand=Plus/Minus Query 34794 TTCTGAATGTTATAGTCCGAAAGGCTTCGTTCATCATCCAGCTGTTTTCCGGCAAATATT 34853 ||||| ||||| ||||| |||||| |||| |||| |||||||| || || || || || Sbjct 2059 TTCTGGATGTTGTAGTCGGAAAGGGTTCGGCCATCCTCCAGCTGCTTGCCAGCGAAGATC 2000 Query 34854 AGTCGTTGCTGGTCTTGCGGCACCCCCTCCTTGTCGCTAATCTTCTGTTTGACGGATGCT 34913 ||||| |||||||| | || | ||||||||||| ||||| ||||| | Sbjct 1999 AGTCGCTGCTGGTCCGGGGGGATGCCCTCCTTGTCCTGGATCTTGGACTTGACATTGTCA 1940 Query 34914 ATCGATTCACCGGCCTCAACATCGACGGTTATGGTTTTTCCCGTGAGAGTCTTCACAAA 34972 || | || || ||| || |||| ||| ||||| || ||||| || |||||||| || Sbjct 1939 ATGGTGTCCGAGGACTCGACCTCGAGGGTGATGGTCTTGCCCGTCAGGGTCTTCACGAA 1881 >seq19757 Length=865 Score = 86.0 bits (94), Expect = 4e-12 Identities = 115/160 (72%), Gaps = 0/160 (0%) Strand=Plus/Plus Query 34825 CATCATCCAGCTGTTTTCCGGCAAATATTAGTCGTTGCTGGTCTTGCGGCACCCCCTCCT 34884 |||| || ||||| || || ||||| || ||||| |||||||| | || | ||||||| Sbjct 17 CATCCTCGAGCTGCTTGCCAGCAAAGATGAGTCGCTGCTGGTCGGGGGGGATGCCCTCCT 76 Query 34885 TGTCGCTAATCTTCTGTTTGACGGATGCTATCGATTCACCGGCCTCAACATCGACGGTTA 34944 |||| ||||| |||||| | || | || | ||| || |||| ||| | Sbjct 77 TGTCCTGGATCTTGGACTTGACGTTGTCGATGGTGTCGGAAGACTCCACCTCGAGGGTGA 136 Query 34945 TGGTTTTTCCCGTGAGAGTCTTCACAAAGATCTGCATATT 34984 | || || |||||||| ||||| |||||||||||||| || Sbjct 137 TTGTCTTCCCCGTGAGGGTCTTGACAAAGATCTGCATCTT 176 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 324419946555528