Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Fusarium_20tucumaniae_20[genbank_20GCA_5F001680725.1_202016-07-06] 54,001 sequences; 49,886,306 total letters Query= NC_020864.1 Length=205622 Score E Sequences producing significant alignments: (Bits) Value seq11483 194 2e-44 seq12608 192 8e-44 seq19757 158 2e-33 seq28553 141 1e-28 seq4691 138 1e-27 seq6290 109 7e-19 seq39101 105 9e-18 seq17274 87.8 2e-12 seq24306 86.0 8e-12 seq18506 86.0 8e-12 >seq11483 Length=1992 Score = 194 bits (214), Expect = 2e-44 Identities = 362/529 (68%), Gaps = 7/529 (1%) Strand=Plus/Minus Query 195461 GCTATGAACCCTATCAATACTGTCTTTGACGCGAAGCGTCTTATTGGTCGCAAGTTTTCG 195520 || |||||||| || || ||||| ||||| ||||| || || ||||||||||| | Sbjct 1983 GCCATGAACCCCCAGAACACCGTCTTCGACGCCAAGCGCCTGATCGGTCGCAAGTTCGCC 1924 Query 195521 GATAAGAAAGTCCAAGACGATATAAAGGACTGGTCTTATGAAGTTGTTC--CCGGTGTGG 195578 || | || || | ||| || ||| ||| | | | ||| | || | | |||| Sbjct 1923 GACCCTGAGGTTCAGGCCGACATGAAGCACTTCCCCT-TCAAGATCATCGACAAGGGTGG 1865 Query 195579 CTGATAAGCCTATGATTAATGTTGAATTTCACGGTGAGAAGAAACAATTTGCTCCCGAAG 195638 | ||||| | || | ||||| || | || ||||| || || | ||||| | Sbjct 1864 C----AAGCCCGTCATCGAGGTTGAGTTCAAGGGCGAGAACAAGACCTTCACCCCCGAGG 1809 Query 195639 AAATTTCGTCTATGGTGTTGATTAAGATGAAGGAGACTGCGGAATCTTTCATGGGTAAAA 195698 | || || || ||||| | | |||||| ||||| || || || | | | || | | Sbjct 1808 AGATCTCCTCCATGGTCCTCACCAAGATGCGAGAGACCGCCGAGTCCTACCTTGGCGAGA 1749 Query 195699 CTGTGAAAGATGCAGTTGTGACTGTACCTGCTTACTTCAGTGATTCACAACGACAGGCGA 195758 | || || | || || || ||||| || || ||||||| || || || || ||||| | Sbjct 1748 CCGTCAACAACGCTGTCGTCACTGTCCCCGCCTACTTCAACGACTCCCAGCGCCAGGCCA 1689 Query 195759 CAAAGGACGCTGCTGCTATTGCGGGTCTAAACTGTCTTAGAATTATCAATGAACCAACAG 195818 | ||||| || | | ||||| || || ||| ||| |||| ||||| ||||| || | Sbjct 1688 CCAAGGATGCCGGTCTCATTGCTGGCCTCAACGTTCTCCGAATCATCAACGAACCCACCG 1629 Query 195819 CGGCTGCAATTGCTTATGGTCTGGACAAGAACAAGGACGAAGATAAAAATGTATTGATCT 195878 | || || ||||| || ||||| |||||||| | || | || || || | |||| Sbjct 1628 CTGCCGCCATTGCCTACGGTCTCGACAAGAAGATTGAGGGCGAGCGCAACGTTCTCATCT 1569 Query 195879 TTGATCTCGGTGGTGGTACGTTTGATGTCTCACTTCTCAATATTGAAGGTGGTATATTCG 195938 | ||||| ||||||||||| || ||||| || || || | ||||| | ||||| |||| Sbjct 1568 TCGATCTTGGTGGTGGTACTTTCGATGTTTCGCTCCTGACCATTGAGGAGGGTATCTTCG 1509 Query 195939 AAGTAAAGGCTACTGCTGGTGATACTCATCTAGGTGGTGAAGATTTCGA 195987 | || ||| |||| || ||||| ||||| || |||||||| || ||||| Sbjct 1508 AGGTCAAGTCTACCGCCGGTGACACTCACCTGGGTGGTGAGGACTTCGA 1460 >seq12608 Length=1983 Score = 192 bits (212), Expect = 8e-44 Identities = 172/216 (80%), Gaps = 0/216 (0%) Strand=Plus/Plus Query 171874 GTGAAAACCCTTACTGGAAAAACTATCACCCTCGAGGTTGAGTCGTCAGACACAATCGAT 171933 || || ||||| ||||| || ||||||||||||||||| ||||| || ||||| ||||| Sbjct 176 GTCAAGACCCTCACTGGTAAGACTATCACCCTCGAGGTGGAGTCTTCCGACACGATCGAC 235 Query 171934 AACATCAAAGCCAAGATTCAAGATAAGGAAGGCATTCCACCCGATCAGCAACGACTTATT 171993 ||| |||| | ||||| ||||||||||| || ||||| || || ||||| || || ||| Sbjct 236 AACGTCAAGTCGAAGATCCAAGATAAGGAGGGTATTCCTCCTGACCAGCAGCGCCTGATT 295 Query 171994 TTTGCTGGTAAACAGCTTGAAGATGGACGTACCCTCGCTGATTACAACGTTCAAAAGGAG 172053 || || || || |||||||| ||||| || |||||||| || |||||| |||| |||||| Sbjct 296 TTCGCCGGCAAGCAGCTTGAGGATGGCCGCACCCTCGCCGACTACAACATTCAGAAGGAG 355 Query 172054 TCTACTCTACACCTTGTTCTAAGGCTTCGGGGTGGT 172089 || || || ||||| || || | || || |||||| Sbjct 356 TCAACACTCCACCTCGTCCTCCGCCTCCGTGGTGGT 391 Score = 187 bits (206), Expect = 3e-42 Identities = 181/233 (78%), Gaps = 0/233 (0%) Strand=Plus/Plus Query 171857 GTAGTATGCAAATCTTTGTGAAAACCCTTACTGGAAAAACTATCACCCTCGAGGTTGAGT 171916 || ||||||| |||||||| || || || |||||||| || ||||| || ||||| |||| Sbjct 615 GTGGTATGCAGATCTTTGTCAAGACTCTCACTGGAAAGACCATCACTCTGGAGGTGGAGT 674 Query 171917 CGTCAGACACAATCGATAACATCAAAGCCAAGATTCAAGATAAGGAAGGCATTCCACCCG 171976 || || || || || ||| | || |||||||||| || ||||| ||||| || || | Sbjct 675 CGAGCGATACCATTGACAACGTGAAGTCCAAGATTCAGGACAAGGAGGGCATCCCCCCTG 734 Query 171977 ATCAGCAACGACTTATTTTTGCTGGTAAACAGCTTGAAGATGGACGTACCCTCGCTGATT 172036 | ||||| |||||||| ||||||||||| ||||| ||||| || |||||||| | || | Sbjct 735 ACCAGCAGCGACTTATCTTTGCTGGTAAGCAGCTGGAAGACGGTCGTACCCTGTCCGACT 794 Query 172037 ACAACGTTCAAAAGGAGTCTACTCTACACCTTGTTCTAAGGCTTCGGGGTGGT 172089 ||||| | || |||||||| || || || |||||||| | || || || ||| Sbjct 795 ACAACATCCAGAAGGAGTCGACCCTTCATCTTGTTCTCCGTCTCCGTGGCGGT 847 Score = 178 bits (196), Expect = 2e-39 Identities = 179/233 (77%), Gaps = 0/233 (0%) Strand=Plus/Plus Query 171857 GTAGTATGCAAATCTTTGTGAAAACCCTTACTGGAAAAACTATCACCCTCGAGGTTGAGT 171916 || ||||||| ||||| || || ||||| || ||||| || |||||||| ||||| || | Sbjct 387 GTGGTATGCAGATCTTCGTCAAGACCCTCACCGGAAAGACCATCACCCTTGAGGTGGAAT 446 Query 171917 CGTCAGACACAATCGATAACATCAAAGCCAAGATTCAAGATAAGGAAGGCATTCCACCCG 171976 |||| ||||| || || || | ||| | ||||| || || |||||||||||||| || | Sbjct 447 CGTCCGACACCATTGACAATGTGAAATCGAAGATCCAGGACAAGGAAGGCATTCCTCCTG 506 Query 171977 ATCAGCAACGACTTATTTTTGCTGGTAAACAGCTTGAAGATGGACGTACCCTCGCTGATT 172036 |||| || ||||| || ||||| || || ||||| || || || || || ||| || | Sbjct 507 ATCAACAGCGACTCATCTTTGCCGGCAAGCAGCTCGAGGACGGCCGAACTCTCAGCGACT 566 Query 172037 ACAACGTTCAAAAGGAGTCTACTCTACACCTTGTTCTAAGGCTTCGGGGTGGT 172089 ||||| | || |||||||| ||||| ||||| ||||| | || || |||||| Sbjct 567 ACAACATCCAGAAGGAGTCGACTCTGCACCTGGTTCTTCGTCTGCGCGGTGGT 619 >seq19757 Length=865 Score = 158 bits (174), Expect = 2e-33 Identities = 135/167 (81%), Gaps = 0/167 (0%) Strand=Plus/Minus Query 171862 ATGCAAATCTTTGTGAAAACCCTTACTGGAAAAACTATCACCCTCGAGGTTGAGTCGTCA 171921 ||||| |||||||| || ||||| || || || || |||||||||||||| ||||| || Sbjct 173 ATGCAGATCTTTGTCAAGACCCTCACGGGGAAGACAATCACCCTCGAGGTGGAGTCTTCC 114 Query 171922 GACACAATCGATAACATCAAAGCCAAGATTCAAGATAAGGAAGGCATTCCACCCGATCAG 171981 ||||| ||||| ||| |||| ||||||| || || ||||| ||||| || ||||| ||| Sbjct 113 GACACCATCGACAACGTCAAGTCCAAGATCCAGGACAAGGAGGGCATCCCCCCCGACCAG 54 Query 171982 CAACGACTTATTTTTGCTGGTAAACAGCTTGAAGATGGACGTACCCT 172028 || ||||| || |||||||| || ||||| || ||||| || ||||| Sbjct 53 CAGCGACTCATCTTTGCTGGCAAGCAGCTCGAGGATGGCCGCACCCT 7 >seq28553 Length=603 Score = 141 bits (156), Expect = 1e-28 Identities = 135/173 (78%), Gaps = 0/173 (0%) Strand=Plus/Plus Query 171886 ACTGGAAAAACTATCACCCTCGAGGTTGAGTCGTCAGACACAATCGATAACATCAAAGCC 171945 || || || || || ||||||||||| ||||| || || || ||||| || |||| | Sbjct 429 ACGGGCAAGACCATTACCCTCGAGGTCGAGTCCTCGGATACCATCGACAATGTCAAGTCG 488 Query 171946 AAGATTCAAGATAAGGAAGGCATTCCACCCGATCAGCAACGACTTATTTTTGCTGGTAAA 172005 |||||||| || ||||| ||||| || ||||| ||||| || || ||||| || || || Sbjct 489 AAGATTCAGGACAAGGAGGGCATCCCCCCCGACCAGCAGCGTCTGATTTTCGCCGGCAAG 548 Query 172006 CAGCTTGAAGATGGACGTACCCTCGCTGATTACAACGTTCAAAAGGAGTCTAC 172058 |||||||| ||||| || |||||| | ||||||||| | || |||||||| || Sbjct 549 CAGCTTGAGGATGGCCGCACCCTCTCCGATTACAACATCCAGAAGGAGTCGAC 601 >seq4691 Length=3338 Score = 138 bits (152), Expect = 1e-27 Identities = 139/181 (77%), Gaps = 0/181 (0%) Strand=Plus/Plus Query 171871 TTTGTGAAAACCCTTACTGGAAAAACTATCACCCTCGAGGTTGAGTCGTCAGACACAATC 171930 || ||||| ||||| || || || || |||||||||||||| ||||| || ||||| || Sbjct 1881 TTCGTGAAGACCCTGACGGGCAAGACCATCACCCTCGAGGTCGAGTCCTCGGACACCATT 1940 Query 171931 GATAACATCAAAGCCAAGATTCAAGATAAGGAAGGCATTCCACCCGATCAGCAACGACTT 171990 || || |||| ||||||| || || ||||| ||||| || || || ||||| ||||| Sbjct 1941 GACAATGTCAAGTCCAAGATCCAGGACAAGGAGGGCATCCCCCCGGACCAGCAGCGACTG 2000 Query 171991 ATTTTTGCTGGTAAACAGCTTGAAGATGGACGTACCCTCGCTGATTACAACGTTCAAAAG 172050 || || ||||| || ||||| || ||||| || ||||| | || |||||| | || ||| Sbjct 2001 ATCTTCGCTGGCAAGCAGCTGGAGGATGGCCGAACCCTTTCCGACTACAACATCCAGAAG 2060 Query 172051 G 172051 | Sbjct 2061 G 2061 >seq6290 Length=3424 Score = 109 bits (120), Expect = 7e-19 Identities = 175/251 (70%), Gaps = 3/251 (1%) Strand=Plus/Minus Query 195719 ACTGTACCTGCTTACTTCAGTGATTCACAACGACAGGCGACAAAGGACGCTGCTGCTATT 195778 ||||| ||||| ||||||| || || |||||||| || |||||||| | | | || Sbjct 2003 ACTGTTCCTGCCTACTTCAACGACAACCAGCGACAGGCCACCAAGGACGCCGGTTCCATC 1944 Query 195779 GCGGGTCTAAACTGTCTTAGAATTATCAATGAACCAACAGCGGCTGCAATTGCTTATGGT 195838 | ||||| ||| || | || ||||| || || || || || || ||||| || ||| Sbjct 1943 TCCGGTCTCAACGTCCTCCGTATCATCAACGAGCCTACTGCCGCCGCCATTGCCTACGGT 1884 Query 195839 CTGGACAAGAACAAG---GACGAAGATAAAAATGTATTGATCTTTGATCTCGGTGGTGGT 195895 || | | |||| || | || || || | |||| ||||||||||||||| Sbjct 1883 CTTGGCTCCGGCAAGTCTGAGAAGGAGCGCAACGTCCTCATCTACGATCTCGGTGGTGGT 1824 Query 195896 ACGTTTGATGTCTCACTTCTCAATATTGAAGGTGGTATATTCGAAGTAAAGGCTACTGCT 195955 || || |||||||| || || || || | |||||| | ||| || ||||| || ||| Sbjct 1823 ACCTTCGATGTCTCCCTCCTGAACATCCAGGGTGGTGTCTTCACTGTCAAGGCCACCGCT 1764 Query 195956 GGTGATACTCA 195966 ||||| ||||| Sbjct 1763 GGTGACACTCA 1753 >seq39101 Length=393 Score = 105 bits (116), Expect = 9e-18 Identities = 171/242 (71%), Gaps = 3/242 (1%) Strand=Plus/Minus Query 195746 CAACGACAGGCGACAAAGGACGCTGCTGCTATTGCGGGTCTAAACTGTCTTAGAATTATC 195805 || |||||||| || |||||||| | | ||||| ||||| ||| || |||| || Sbjct 261 CAGCGACAGGCCACCAAGGACGCCGGTATCATTGCCGGTCTCAACGTCCTCCGAATCGTC 202 Query 195806 AATGAACCAACAGCGGCTGCAATTGCTTATGGTCTGGACAAGAACAAGGACGAAGATAAA 195865 || || || || || || || || || || ||||| ||||||| | | | ||| | | Sbjct 201 AACGAGCCCACCGCCGCCGCCATCGCCTACGGTCTTGACAAGACCGACGGCGA-GCGCCA 143 Query 195866 AATGTATTGATCTTTGATCTCGGTGGTGGTACGTTTGATGTCTCACTTCTCAATATTGAA 195925 || || | | | || |||||||||||||| || |||||||| || || || || Sbjct 142 GATC-ATCGTT-TACGACCTCGGTGGTGGTACCTTCGATGTCTCTCTCCTGTCCATCGAC 85 Query 195926 GGTGGTATATTCGAAGTAAAGGCTACTGCTGGTGATACTCATCTAGGTGGTGAAGATTTC 195985 | || || ||||| || ||| || |||||||| || ||||| || ||||| |||||| Sbjct 84 GACGGCATCTTCGAGGTCCTGGCCACCGCTGGTGACACCCATCTCGGCGGTGAGGATTTC 25 Query 195986 GA 195987 || Sbjct 24 GA 23 >seq17274 Length=1542 Score = 87.8 bits (96), Expect = 2e-12 Identities = 217/325 (67%), Gaps = 16/325 (5%) Strand=Plus/Minus Query 198540 GGTGCCCGAATCCCACGTGGTGCTCTTCTCGCCGGTGCCCCGGGTACTGGTAAAACCCTT 198599 |||||| || || || || || |||| || || |||| ||||| ||||| || | Sbjct 336 GGTGCCAAGATTCCCCGAGGAGCCATTCTGGCTGGCCCCCCTGGTACGGGTAAGACATTG 277 Query 198600 CTAGCTCGTGCTATCGCGGGTGAATCGAGTGTCCCCTTTCTTCAGTGCTCCGCGG--CGA 198657 || || |||| || || || || | |||||||| |||||||| | |||| | Sbjct 276 CTCGCCAAGGCTACAGCTGGCGAGTCTGGAGTCCCCTT-CTTCAGTG-TGAGCGGTTCTG 219 Query 198658 GTTTCATCGAGATGTTCGTTGGTGTTGGTGCTAAGCGCGTCCGGGAACTCTTTGAGCAAG 198717 ||| |||||||||| |||||||||||| || || || || || || || | ||| Sbjct 218 AATTCGTCGAGATGTTTGTTGGTGTTGGTCCTTCCCGTGTGCGAGACCTGTTCGCCGAAG 159 Query 198718 CACGTGAAAATCAACCATGTATCATCTTCATTGATGAGATTGACGCTGTTGGT------- 198770 ||| | || || || |||||||| || |||||||| ||||| ||||| Sbjct 158 GCCGTAAGAACGCTCCTTGCATCATCTTTATCGATGAGATCGACGCCATTGGTCGAGCGC 99 Query 198771 --AAGAAGCGTGGTGGAACTACTACACCTGGTAATGATGAGCGTGAGCAGACGATTAACC 198828 || || |||| | | | | ||| || || ||||| ||| ||| | |||| Sbjct 98 GACAGGAGAGTGGCCGGGGT--TTC-GGTGGCAACGACGAGCGGGAGGCGACTCTGAACC 42 Query 198829 AGCTTCTCACTGAGATGGATGGTTT 198853 || |||| || |||||||| ||||| Sbjct 41 AGATTCTGACCGAGATGGACGGTTT 17 >seq24306 Length=703 Score = 86.0 bits (94), Expect = 8e-12 Identities = 112/155 (72%), Gaps = 0/155 (0%) Strand=Plus/Minus Query 195362 GAGATTATCCCGAATGACCAAGGAAACCGTACAACTCCATCGTACGTTGCCTTTACAGAT 195421 || || ||| | || ||||| || ||||| || ||||| || | ||| | || || || Sbjct 186 GACATCATCGCCAACGACCAGGGTAACCGAACCACTCCCTCTTTCGTCGGTTTCACCGAC 127 Query 195422 AATGAACGTCTCGTTGGAGATGCCGCAAAAAATCAGACAGCTATGAACCCTATCAATACT 195481 | || ||||| | || |||||||| || || ||| || |||||||| || || Sbjct 126 ACCGAGCGTCTGATCGGTGATGCCGCCAAGAACCAGGTCGCCATGAACCCCCAGAACACC 67 Query 195482 GTCTTTGACGCGAAGCGTCTTATTGGTCGCAAGTT 195516 ||||| ||||| ||||| || || ||||||||||| Sbjct 66 GTCTTCGACGCCAAGCGCCTGATCGGTCGCAAGTT 32 >seq18506 Length=1636 Score = 86.0 bits (94), Expect = 8e-12 Identities = 186/272 (68%), Gaps = 6/272 (2%) Strand=Plus/Plus Query 198441 ACTACGCGATTCAAGGATGTTGAGGGTATCGACTCAGCTAAGGATGAGCTCGAGGAGATT 198500 || || ||||||| ||||| | || |||| || ||||| |||||| ||||| | Sbjct 993 ACCACACGATTCAGCGATGTCCACGGCTGCGACGAGGCCAAGGAGGAGCTCCAGGAGGTG 1052 Query 198501 GTTGATTTTCTTAAAAACCCCGAAAAGTACTATGGAAGTGGTGCC-CGAATCCCACGTGG 198559 || || ||||| || ||||||||||||| | | ||||||| | |||| | || Sbjct 1053 GTCGAGTTTCTCAAGAACCCCGAAAAGTTCAGCGACCTTGGTGCCAAGCTGCCCAAG-GG 1111 Query 198560 TGCTCTTCTCGCCGGTGCCCCGGGTACTGGTAAAACCCTTCTAGCTCGTGCTATCGCGGG 198619 || ||| || | || | || ||||| || || || ||||| || || || | || || Sbjct 1112 TGTTCTCCTGGTTGGCCCTCCCGGTACCGGAAAGACTCTTCTTGCCCGAGCCGTTGCTGG 1171 Query 198620 TGAATCGAGTGTCCCCT--TTCTTCAGTGCTCCGCGGCGAGTTTCATCGAGATGTTCGTT 198677 || | | || |||| |||| || || | |||||||| | |||||| || || Sbjct 1172 CGAGGCCGGAGTTCCCTTCTTCTACA-TGTCTGGTAGCGAGTTTGA-CGAGATCTTTGTG 1229 Query 198678 GGTGTTGGTGCTAAGCGCGTCCGGGAACTCTT 198709 ||||| || || ||||| || || || ||||| Sbjct 1230 GGTGTCGGAGCCAAGCGAGTTCGCGAGCTCTT 1261 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 657418334656720