Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Fusarium_20tucumaniae_20[genbank_20GCA_5F001680725.1_202016-07-06] 54,001 sequences; 49,886,306 total letters Query= NC_021858.1 Length=1908524 Score E Sequences producing significant alignments: (Bits) Value seq9934 154 2e-31 seq13449 129 7e-24 seq10589 125 9e-23 seq43553 114 2e-19 seq27826 93.3 5e-13 >seq9934 Length=2663 Score = 154 bits (170), Expect = 2e-31 Identities = 185/250 (74%), Gaps = 1/250 (0%) Strand=Plus/Plus Query 868691 GCCTTGGCGTACTCGCCCACGCGCCGCTCGAAAAAGTTGGTCTTGCCCTCGAGCGAGATC 868750 ||||| ||| || || || ||| |||||| |||||||||||||| |||| ||||| Sbjct 80 GCCTTCTGGTAGTCACCGACACGCTTCTCGAAGAAGTTGGTCTTGCCACCGAGGGAGATG 139 Query 868751 AACTCCATCCACGGGAACGGGTTGGGCGTCTTGTAGTGCTTTTCGCATCCGAGCGACGCG 868810 |||||| | ||| ||||||| | ||||||| ||| ||| ||||| | || Sbjct 140 TTCTCCATGAAGTCGAAGGGGTTGGTGGCCTTGTAGACCTTCTCGTTGCCGAGGGCGACG 199 Query 868811 AGCAGGCGGTCGGCGACAAACTCGATGTACTGGCACATGAGGCCGGCGTTCATGCCGATG 868870 || |||||||||||||| |||||||||||||| ||||||| ||||||||||||||| Sbjct 200 AGGAGGCGGTCGGCGACGAACTCGATGTACTGCTTCATGAGGTCGGCGTTCATGCCGAGC 259 Query 868871 AGCGCCACCGGCAGCGACTCGCTCACAAACTCTTTCTCGATCTCGACGGCCTCGACGATG 868930 || || || || | |||| ||| ||||| | ||| || |||||| ||| |||| Sbjct 260 AGGGCGCAGGGGAGGGCCTCGGTCAGGAACTCCTGCTCAATGGTGACGGCATCGGTGATG 319 Query 868931 ATCTGCCTGG 868940 || | ||||| Sbjct 320 ATGT-CCTGG 328 Score = 150 bits (166), Expect = 2e-30 Identities = 213/291 (73%), Gaps = 15/291 (5%) Strand=Plus/Plus Query 869179 ACCTTCGTCGCGACTGATCATTTCGTTGCTAAAGGCGAGGCCGGGCATGAGGCCGCGCTT 869238 ||| ||||| ||| ||| | |||||| ||||| ||||| ||||||||||| ||||| Sbjct 394 ACCCTCGTCACGAGAGATGAGCTCGTTGGAAAAGGTCAGGCCAGGCATGAGGCCACGCTT 453 Query 869239 CTTGAGCCAAAAGATGGCGCAGAAACTGC-CCG-AGAAAAAGATGCCCTCGACGGCGGCA 869296 ||||||||| ||||||| | | || || ||| ||| ||||| ||||||||||| ||| Sbjct 454 CTTGAGCCAGAAGATGGAG--GCAAAGGCACCGCTGAAGAAGATACCCTCGACGGCAGCA 511 Query 869297 AAGCCGATGAGCCGCTCGGCAAAGGTGTCGAGGCCCTCCTTG---TTGATCCACTTCATC 869353 || ||| ||| |||| |||||| | |||| | |||| | |||||| || Sbjct 512 AAAGCGACGAGACGCTGAGCAAAG--GACGAG----TTCTTGTCCTGGATCCATCGGATG 565 Query 869354 GCCCAGTCGGCCTTTTTCCTCACCGACGGCACCGTGTCGATGGCGCGAAAGAGGT-GGTC 869412 |||||||||||||| || | | | || | || || |||||| ||||||| ||| Sbjct 566 GCCCAGTCGGCCTTCTTGCGGATGCAGGGGATGGTCTCAATGGCGTTGAAGAGGTAGGTT 625 Query 869413 CTTTTCGGCCGGGTCCTTGACATAGGTGTCGATCAGGAGCGAATAGGTCTC 869463 | || || || ||||||| |||||||| || |||||||| |||||||| Sbjct 626 C-GTTGAGCAGGCTCCTTGATGTAGGTGTCAATGAGGAGCGAGTAGGTCTC 675 >seq13449 Length=2090 Score = 129 bits (142), Expect = 7e-24 Identities = 299/448 (67%), Gaps = 17/448 (4%) Strand=Plus/Plus Query 1630065 CTGGTCGACGTAGCGCGCCGTGTCGTTAAAGACGCGGAGCATGGGCACGAGGCCGTTGGA 1630124 |||||||||||| || || |||| ||| ||||| || |||||||| || |||||||| Sbjct 1350 CTGGTCGACGTACCGGGCAGTGTTGTTGAAGACACGAAGCATGGGGGTGACACCGTTGGA 1409 Query 1630125 CTCGCCGTTGGTGCCCGCCACGTAGGCGCCGGCGGCGCGCACCTTGTGCGCGGCAAAGCC 1630184 |||||||| || || | ||| | ||| | ||| || | ||| || | ||| Sbjct 1410 GGTACCGTTGGTACCAGCGATGTAAGAGCCAGTGGCACGGATTCGGTGGACGTTCAGGCC 1469 Query 1630185 GATGCCGCCGGCCGACTTGGAGATGAGCGCGCACTGTTTGAGCGTGTCGTAGATGCCCTC 1630244 ||| || || ||| ||||||||| | || || ||||| || || || || ||||| Sbjct 1470 GATACCACCCGCCATCTTGGAGATCATGGCACAGGTCTTGAGAGTATCATAAATACCCTC 1529 Query 1630245 GATCGAGTCGGCCTTCATGTCCACGAGAAAGCACGACGAGTTTTGCGGGTGCGCCGTGCC 1630304 || ||| | |||||||| || || ||||| || || || || || | || || Sbjct 1530 AATGCTGTCCTCTTTCATGTCGACCAGGAAGCATGAGGACAGCTGAGGCTGGGGAGTACC 1589 Query 1630305 GGCGTTGAAGAGCGTGGGCGTCGCCGCGGTGAACAACTGCCGCGACATGGCGTCGTAGGT 1630364 || |||||||| ||||| | || |||||| || | | |||||| || |||||| Sbjct 1590 AGCATTGAAGAGGGTGGGGGAGGCATGGGTGAAGAATTTGCTCGACATCAGGTTGTAGGT 1649 Query 1630365 GGCGAGCACGCGCGCCAGCGCATCGTCCACGTCGGCAAACCCATAGTGGCCGATGGCGAC 1630424 | || || ||| | | |||||| |||| || ||||| | || Sbjct 1650 CTCCAGGACACGCTCAA---TATCGTC-----------ACCC-CAGATGCCGACAGACAC 1694 Query 1630425 GCGCATGAGCATGTACTGGGGCCGCTCGACGACGACGCCGCGCACCTTGGTCAGGTAGGA 1630484 ||||||| ||||| |||||| ||||| || | ||| | |||| |||||||| Sbjct 1695 ACGCATGATCATGTGCTGGGGACGCTCAACAATCTTGCCATCAATCTTGAGGAGGTAGGA 1754 Query 1630485 CCGGCGCATG-GTCATGAGGCCAAAGTA 1630511 | || || | ||| ||| ||||||||| Sbjct 1755 TC-GCTCAAGAGTCTTGAAGCCAAAGTA 1781 Score = 113 bits (124), Expect = 6e-19 Identities = 288/443 (65%), Gaps = 8/443 (2%) Strand=Plus/Plus Query 1628162 ACTGGACGATCTCGGTGCACAGGTTGG-CCGACGTCGTCGTACCCAGGTTCTGCTGGTTG 1628220 ||| || ||||||||||| || |||| | ||| | || |||||||||| ||||||| Sbjct 911 ACTCGATAATCTCGGTGCAGAGATTGGAGCTACG-GATGGTGCCCAGGTTCTTCTGGTTG 969 Query 1628221 GTGGTCAGGTTGACGGCGTCCTTGTGGAGCATGTAGGGCGCGCCGGTCTCGATCTGCGCC 1628280 | | ||||| | |||||||| ||||||| |||| |||||||||| |||||||| Sbjct 970 CTCTTGCGGTTGCAGTGGTCCTTGTAGAGCATGAAGGGGTTGCCGGTCTCGGTCTGCGCC 1029 Query 1628281 GCGACGATGGCCGACCAGATCTGGCGCGCGGGCACGACAGTCCGCGCGCGGCCCTNNNNN 1628340 ||| |||||| |||||| || | || || | | || | |||| Sbjct 1030 TCGAGGATGGCATACCAGAGCTTCTGGGCCTTCATGGTCTTGCGACCCTTGCCCGCCTTC 1089 Query 1628341 NNNNNNNNNNNNNNNNNNNNNTCAAAGGCCGCGCCGTAGCACTCGTGCAGGCCGGGCGCC 1628400 || || || |||| ||||| ||| ||| ||||| | Sbjct 1090 TCATACTTTTCGTAAAGAGCCTCGAACTCCTCGCCATAGCAGTCGGCCAGACCGGGGCAC 1149 Query 1628401 TCGGACGGACAAAAGAGCGACCAGTCGCCACCGGTCACCGCG---CGGCGCATAAAGAGG 1628457 ||| ||||| | ||| | ||||| ||||| || | || || ||| ||||| Sbjct 1150 TCGTTGGGACACATGAGGGTCCAGT---CACCGTTCTTCTCGACACGCTTCATGAAGAGA 1206 Query 1628458 TCACACGTCCACAGTGCGTAAAAGAGGTCGCGCGCCCGGTTCTCCTCCTTGCCGTGGTTC 1628517 || |||| || || || |||||||| || ||| ||||||||||||||||||| Sbjct 1207 TCGGGAATCCAGAGAGCCAGGAACAGGTCGCGGGCGCGGACCTCCTCCTTGCCGTGGTTC 1266 Query 1628518 TTTTTGAGGTCGAGCCAGTCGACAATGTCGGCGTGCCACGGCTCCAGGTAGCAGGCAAAG 1628577 || ||||| || | || | | || |||||||| ||||| |||||| ||||||| Sbjct 1267 TTGCGCAGGTCAAGGAACTCAAAGACATCTGCGTGCCAGGGCTCAAGGTAGATGGCAAAG 1326 Query 1628578 GCGCCCTTGCGCTTGCCGCCGCC 1628600 || || |||||| ||| || Sbjct 1327 GCACCAGGTCGCTTGTTGCCACC 1349 Score = 91.5 bits (100), Expect = 2e-12 Identities = 160/228 (70%), Gaps = 4/228 (2%) Strand=Plus/Plus Query 1627293 CGTCCACAGGCCGCGCGCCATCA-GGCGCTTGACCAGGTGGCGGTTGACCACGGTAAAGT 1627351 || ||||||||| | | || || || ||||| ||| | ||||||| || || | Sbjct 255 CGACCACAGGCC-CATGTCAACAAGGTCCTTGAGCAGCCAGGGGTTGACGACCTGGAACT 313 Query 1627352 CGCCCGAGAGCACGCGGCGCGTGTAGATGTTGTTGGTGATGACCTCGCACGCCTCGGTGT 1627411 |||| | ||| || |||||| |||||||||| |||| |||| | |||| ||| Sbjct 314 CGCCAGCGAGGACACGGCGCTGGTAGATGTTGGAGGTGTAAGGCTCGAAGCACTCGTTGT 373 Query 1627412 TGCCCAGGATCTGCGACGTCGTGGCCGTGGGCATGAGCGCCACGAGGAGCGAGTTGCGCA 1627471 |||||||||||||||| || |||| || ||||| | || | || || |||||| | Sbjct 374 TGCCCAGGATCTGCGAAGTACTGGCAGTAGGCATAGGGGCAAGCAGCAGACTGTTGCGAA 433 Query 1627472 GGCCGTGCT-GTCGAACTAGCGCGCGCAGCGCGTCCCAGTCCCAGCGG 1627518 |||||||| | || || || | || || |||||||||||| || Sbjct 434 TGCCGTGCTCCTTGACCT-GCTCCCGGAGGTTCTCCCAGTCCCAGAGG 480 >seq10589 Length=2182 Score = 125 bits (138), Expect = 9e-23 Identities = 93/109 (85%), Gaps = 0/109 (0%) Strand=Plus/Minus Query 1592186 GCCGCCAACTACCTCGACATCAAGCCTCTGCTCGATCTTGGGTGCAAGTCTGTGGCCAAC 1592245 ||| ||||||| |||||||||||||| || || ||| | || |||||| | || |||||| Sbjct 1605 GCCTCCAACTATCTCGACATCAAGCCCCTTCTTGATGTCGGCTGCAAGACCGTCGCCAAC 1546 Query 1592246 ATGATCAAGGGCAAGTCGCCCGAGGAGATCCGCAAGACCTTTAACATCA 1592294 ||||||||||||||||| ||||||||||| || ||||| || ||||||| Sbjct 1545 ATGATCAAGGGCAAGTCTCCCGAGGAGATTCGGAAGACTTTCAACATCA 1497 >seq43553 Length=258 Score = 114 bits (126), Expect = 2e-19 Identities = 132/178 (74%), Gaps = 0/178 (0%) Strand=Plus/Minus Query 1574057 CCTGCCGCCCGGACGCCACAAGGTGATCATCCTCGACGAGGCCGACTGCCTCACGTCGGC 1574116 ||||||| |||| ||||||||| || ||||||||||||| || ||| || | || |||| Sbjct 250 CCTGCCGGCCGGCCGCCACAAGCTGGTCATCCTCGACGAAGCTGACAGCATGACCTCGGG 191 Query 1574117 GGCCCAGCAGGCCCTGCGGTCCACCATGGAAAAGCACACCAACACGACGCGCTTTGCCCT 1574176 |||||||| || || || |||||||||| || |||||||||| | || ||| | Sbjct 190 CGCCCAGCAAGCACTCCGACGAACCATGGAAATCTACTCCAACACGACCAGATTCGCCTT 131 Query 1574177 GGCGTGCAACACGTCGTCGATGGTCATCGAGGCCCTCCAAAGTCGCTGCGCCATTCTG 1574234 || |||||| ||| | | |||| ||| |||| ||| || |||||||| ||| Sbjct 130 TGCCTGCAACCAGTCCAACAAGATCATTGAGCCCCTACAATCGCGATGCGCCATCCTG 73 >seq27826 Length=861 Score = 93.3 bits (102), Expect = 5e-13 Identities = 257/386 (67%), Gaps = 16/386 (4%) Strand=Plus/Minus Query 511949 GGCGTGGACGCCTCGCGCAGTCACACCAACGACATCAACCGCGTGGCCGCCGTGCTGGGC 512008 ||||| ||||| ||||| | ||||||||||| | | |||| || ||| | || Sbjct 628 GGCGTCGACGCTTCGCGGACATACACCAACGACCTGTGGCAAGTGGTCGAGGTGTTTGGT 569 Query 512009 ATCGAGGCCGCCGTGGCCGTGCTCTTTTCC--GAGATCAAGGCCGTCATCTCCTTTGACG 512066 |||||||| ||| | || ||||| || ||| | | ||| | | ||||||| Sbjct 568 ATCGAGGCAGCCC-GTTCG-GCTCTGGTCAAGGAGTTGACCAACGTGCTGGCGTTTGACG 511 Query 512067 GCACCTACGTCAACGACCGCCACTTTGCGCTGGCCACCGACACCATGTGCTGCCGCGGAT 512126 | ||||||||||| | || ||| |||||||| || || |||| | | | |||| Sbjct 510 GTTCCTACGTCAACCATCGTCACATTGCGCTGCTGACAGATGTCATGACGTACAGAGGAT 451 Query 512127 CGGTGGTGGCCGTCACGCGCCACGGCTTCAACCGCGCCGACCACGGCTTC-CTGTCGCGG 512185 | | ||| || || || ||||| ||||||| || || ||| | | | ||| ||| Sbjct 450 CCATCTCGGCTGTGACCCGACACGGTATCAACCGTGCTGA-CACTGGTGCTCTGATGCGT 392 Query 512186 GCCTCTTTCGAAGAGACCGTCGACATCCTCTTTGACGCGGCGGCCTTTGCCGAGACCGAC 512245 |||||||| ||||| ||||| ||| | | || || || || | || | || | | Sbjct 391 TGTTCTTTCGAGGAGACGGTCGAGATCTTGCTCGAGGCTGCCGCGTCTG--GTGAGCTAG 334 Query 512246 AAGATCACCGACG--GCTCGGTGACCGAGCCCATCATCCTGGGCCAGACGGCGCCCATCG 512303 | || |||| | ||||| || || |||| |||||||||| |||||| || | Sbjct 333 ATGACTGCCGAGGTATCTCGGAGAACG------TCATGCTGGGCCAGATGGCGCCAATGG 280 Query 512304 GCACGGCCATCTCGGACGTGCTCGTG 512329 |||||| | || || |||||| || Sbjct 279 GCACGGGTAACTTTGATGTGCTCCTG 254 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 6102707625053317