Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Fusarium_20tucumaniae_20[genbank_20GCA_5F001680725.1_202016-07-06]
54,001 sequences; 49,886,306 total letters
Query= NC_021858.1
Length=1908524
Score E
Sequences producing significant alignments: (Bits) Value
seq9934 154 2e-31
seq13449 129 7e-24
seq10589 125 9e-23
seq43553 114 2e-19
seq27826 93.3 5e-13
>seq9934
Length=2663
Score = 154 bits (170), Expect = 2e-31
Identities = 185/250 (74%), Gaps = 1/250 (0%)
Strand=Plus/Plus
Query 868691 GCCTTGGCGTACTCGCCCACGCGCCGCTCGAAAAAGTTGGTCTTGCCCTCGAGCGAGATC 868750
||||| ||| || || || ||| |||||| |||||||||||||| |||| |||||
Sbjct 80 GCCTTCTGGTAGTCACCGACACGCTTCTCGAAGAAGTTGGTCTTGCCACCGAGGGAGATG 139
Query 868751 AACTCCATCCACGGGAACGGGTTGGGCGTCTTGTAGTGCTTTTCGCATCCGAGCGACGCG 868810
|||||| | ||| ||||||| | ||||||| ||| ||| ||||| | ||
Sbjct 140 TTCTCCATGAAGTCGAAGGGGTTGGTGGCCTTGTAGACCTTCTCGTTGCCGAGGGCGACG 199
Query 868811 AGCAGGCGGTCGGCGACAAACTCGATGTACTGGCACATGAGGCCGGCGTTCATGCCGATG 868870
|| |||||||||||||| |||||||||||||| ||||||| |||||||||||||||
Sbjct 200 AGGAGGCGGTCGGCGACGAACTCGATGTACTGCTTCATGAGGTCGGCGTTCATGCCGAGC 259
Query 868871 AGCGCCACCGGCAGCGACTCGCTCACAAACTCTTTCTCGATCTCGACGGCCTCGACGATG 868930
|| || || || | |||| ||| ||||| | ||| || |||||| ||| ||||
Sbjct 260 AGGGCGCAGGGGAGGGCCTCGGTCAGGAACTCCTGCTCAATGGTGACGGCATCGGTGATG 319
Query 868931 ATCTGCCTGG 868940
|| | |||||
Sbjct 320 ATGT-CCTGG 328
Score = 150 bits (166), Expect = 2e-30
Identities = 213/291 (73%), Gaps = 15/291 (5%)
Strand=Plus/Plus
Query 869179 ACCTTCGTCGCGACTGATCATTTCGTTGCTAAAGGCGAGGCCGGGCATGAGGCCGCGCTT 869238
||| ||||| ||| ||| | |||||| ||||| ||||| ||||||||||| |||||
Sbjct 394 ACCCTCGTCACGAGAGATGAGCTCGTTGGAAAAGGTCAGGCCAGGCATGAGGCCACGCTT 453
Query 869239 CTTGAGCCAAAAGATGGCGCAGAAACTGC-CCG-AGAAAAAGATGCCCTCGACGGCGGCA 869296
||||||||| ||||||| | | || || ||| ||| ||||| ||||||||||| |||
Sbjct 454 CTTGAGCCAGAAGATGGAG--GCAAAGGCACCGCTGAAGAAGATACCCTCGACGGCAGCA 511
Query 869297 AAGCCGATGAGCCGCTCGGCAAAGGTGTCGAGGCCCTCCTTG---TTGATCCACTTCATC 869353
|| ||| ||| |||| |||||| | |||| | |||| | |||||| ||
Sbjct 512 AAAGCGACGAGACGCTGAGCAAAG--GACGAG----TTCTTGTCCTGGATCCATCGGATG 565
Query 869354 GCCCAGTCGGCCTTTTTCCTCACCGACGGCACCGTGTCGATGGCGCGAAAGAGGT-GGTC 869412
|||||||||||||| || | | | || | || || |||||| ||||||| |||
Sbjct 566 GCCCAGTCGGCCTTCTTGCGGATGCAGGGGATGGTCTCAATGGCGTTGAAGAGGTAGGTT 625
Query 869413 CTTTTCGGCCGGGTCCTTGACATAGGTGTCGATCAGGAGCGAATAGGTCTC 869463
| || || || ||||||| |||||||| || |||||||| ||||||||
Sbjct 626 C-GTTGAGCAGGCTCCTTGATGTAGGTGTCAATGAGGAGCGAGTAGGTCTC 675
>seq13449
Length=2090
Score = 129 bits (142), Expect = 7e-24
Identities = 299/448 (67%), Gaps = 17/448 (4%)
Strand=Plus/Plus
Query 1630065 CTGGTCGACGTAGCGCGCCGTGTCGTTAAAGACGCGGAGCATGGGCACGAGGCCGTTGGA 1630124
|||||||||||| || || |||| ||| ||||| || |||||||| || ||||||||
Sbjct 1350 CTGGTCGACGTACCGGGCAGTGTTGTTGAAGACACGAAGCATGGGGGTGACACCGTTGGA 1409
Query 1630125 CTCGCCGTTGGTGCCCGCCACGTAGGCGCCGGCGGCGCGCACCTTGTGCGCGGCAAAGCC 1630184
|||||||| || || | ||| | ||| | ||| || | ||| || | |||
Sbjct 1410 GGTACCGTTGGTACCAGCGATGTAAGAGCCAGTGGCACGGATTCGGTGGACGTTCAGGCC 1469
Query 1630185 GATGCCGCCGGCCGACTTGGAGATGAGCGCGCACTGTTTGAGCGTGTCGTAGATGCCCTC 1630244
||| || || ||| ||||||||| | || || ||||| || || || || |||||
Sbjct 1470 GATACCACCCGCCATCTTGGAGATCATGGCACAGGTCTTGAGAGTATCATAAATACCCTC 1529
Query 1630245 GATCGAGTCGGCCTTCATGTCCACGAGAAAGCACGACGAGTTTTGCGGGTGCGCCGTGCC 1630304
|| ||| | |||||||| || || ||||| || || || || || | || ||
Sbjct 1530 AATGCTGTCCTCTTTCATGTCGACCAGGAAGCATGAGGACAGCTGAGGCTGGGGAGTACC 1589
Query 1630305 GGCGTTGAAGAGCGTGGGCGTCGCCGCGGTGAACAACTGCCGCGACATGGCGTCGTAGGT 1630364
|| |||||||| ||||| | || |||||| || | | |||||| || ||||||
Sbjct 1590 AGCATTGAAGAGGGTGGGGGAGGCATGGGTGAAGAATTTGCTCGACATCAGGTTGTAGGT 1649
Query 1630365 GGCGAGCACGCGCGCCAGCGCATCGTCCACGTCGGCAAACCCATAGTGGCCGATGGCGAC 1630424
| || || ||| | | |||||| |||| || ||||| | ||
Sbjct 1650 CTCCAGGACACGCTCAA---TATCGTC-----------ACCC-CAGATGCCGACAGACAC 1694
Query 1630425 GCGCATGAGCATGTACTGGGGCCGCTCGACGACGACGCCGCGCACCTTGGTCAGGTAGGA 1630484
||||||| ||||| |||||| ||||| || | ||| | |||| ||||||||
Sbjct 1695 ACGCATGATCATGTGCTGGGGACGCTCAACAATCTTGCCATCAATCTTGAGGAGGTAGGA 1754
Query 1630485 CCGGCGCATG-GTCATGAGGCCAAAGTA 1630511
| || || | ||| ||| |||||||||
Sbjct 1755 TC-GCTCAAGAGTCTTGAAGCCAAAGTA 1781
Score = 113 bits (124), Expect = 6e-19
Identities = 288/443 (65%), Gaps = 8/443 (2%)
Strand=Plus/Plus
Query 1628162 ACTGGACGATCTCGGTGCACAGGTTGG-CCGACGTCGTCGTACCCAGGTTCTGCTGGTTG 1628220
||| || ||||||||||| || |||| | ||| | || |||||||||| |||||||
Sbjct 911 ACTCGATAATCTCGGTGCAGAGATTGGAGCTACG-GATGGTGCCCAGGTTCTTCTGGTTG 969
Query 1628221 GTGGTCAGGTTGACGGCGTCCTTGTGGAGCATGTAGGGCGCGCCGGTCTCGATCTGCGCC 1628280
| | ||||| | |||||||| ||||||| |||| |||||||||| ||||||||
Sbjct 970 CTCTTGCGGTTGCAGTGGTCCTTGTAGAGCATGAAGGGGTTGCCGGTCTCGGTCTGCGCC 1029
Query 1628281 GCGACGATGGCCGACCAGATCTGGCGCGCGGGCACGACAGTCCGCGCGCGGCCCTNNNNN 1628340
||| |||||| |||||| || | || || | | || | ||||
Sbjct 1030 TCGAGGATGGCATACCAGAGCTTCTGGGCCTTCATGGTCTTGCGACCCTTGCCCGCCTTC 1089
Query 1628341 NNNNNNNNNNNNNNNNNNNNNTCAAAGGCCGCGCCGTAGCACTCGTGCAGGCCGGGCGCC 1628400
|| || || |||| ||||| ||| ||| ||||| |
Sbjct 1090 TCATACTTTTCGTAAAGAGCCTCGAACTCCTCGCCATAGCAGTCGGCCAGACCGGGGCAC 1149
Query 1628401 TCGGACGGACAAAAGAGCGACCAGTCGCCACCGGTCACCGCG---CGGCGCATAAAGAGG 1628457
||| ||||| | ||| | ||||| ||||| || | || || ||| |||||
Sbjct 1150 TCGTTGGGACACATGAGGGTCCAGT---CACCGTTCTTCTCGACACGCTTCATGAAGAGA 1206
Query 1628458 TCACACGTCCACAGTGCGTAAAAGAGGTCGCGCGCCCGGTTCTCCTCCTTGCCGTGGTTC 1628517
|| |||| || || || |||||||| || ||| |||||||||||||||||||
Sbjct 1207 TCGGGAATCCAGAGAGCCAGGAACAGGTCGCGGGCGCGGACCTCCTCCTTGCCGTGGTTC 1266
Query 1628518 TTTTTGAGGTCGAGCCAGTCGACAATGTCGGCGTGCCACGGCTCCAGGTAGCAGGCAAAG 1628577
|| ||||| || | || | | || |||||||| ||||| |||||| |||||||
Sbjct 1267 TTGCGCAGGTCAAGGAACTCAAAGACATCTGCGTGCCAGGGCTCAAGGTAGATGGCAAAG 1326
Query 1628578 GCGCCCTTGCGCTTGCCGCCGCC 1628600
|| || |||||| ||| ||
Sbjct 1327 GCACCAGGTCGCTTGTTGCCACC 1349
Score = 91.5 bits (100), Expect = 2e-12
Identities = 160/228 (70%), Gaps = 4/228 (2%)
Strand=Plus/Plus
Query 1627293 CGTCCACAGGCCGCGCGCCATCA-GGCGCTTGACCAGGTGGCGGTTGACCACGGTAAAGT 1627351
|| ||||||||| | | || || || ||||| ||| | ||||||| || || |
Sbjct 255 CGACCACAGGCC-CATGTCAACAAGGTCCTTGAGCAGCCAGGGGTTGACGACCTGGAACT 313
Query 1627352 CGCCCGAGAGCACGCGGCGCGTGTAGATGTTGTTGGTGATGACCTCGCACGCCTCGGTGT 1627411
|||| | ||| || |||||| |||||||||| |||| |||| | |||| |||
Sbjct 314 CGCCAGCGAGGACACGGCGCTGGTAGATGTTGGAGGTGTAAGGCTCGAAGCACTCGTTGT 373
Query 1627412 TGCCCAGGATCTGCGACGTCGTGGCCGTGGGCATGAGCGCCACGAGGAGCGAGTTGCGCA 1627471
|||||||||||||||| || |||| || ||||| | || | || || |||||| |
Sbjct 374 TGCCCAGGATCTGCGAAGTACTGGCAGTAGGCATAGGGGCAAGCAGCAGACTGTTGCGAA 433
Query 1627472 GGCCGTGCT-GTCGAACTAGCGCGCGCAGCGCGTCCCAGTCCCAGCGG 1627518
|||||||| | || || || | || || |||||||||||| ||
Sbjct 434 TGCCGTGCTCCTTGACCT-GCTCCCGGAGGTTCTCCCAGTCCCAGAGG 480
>seq10589
Length=2182
Score = 125 bits (138), Expect = 9e-23
Identities = 93/109 (85%), Gaps = 0/109 (0%)
Strand=Plus/Minus
Query 1592186 GCCGCCAACTACCTCGACATCAAGCCTCTGCTCGATCTTGGGTGCAAGTCTGTGGCCAAC 1592245
||| ||||||| |||||||||||||| || || ||| | || |||||| | || ||||||
Sbjct 1605 GCCTCCAACTATCTCGACATCAAGCCCCTTCTTGATGTCGGCTGCAAGACCGTCGCCAAC 1546
Query 1592246 ATGATCAAGGGCAAGTCGCCCGAGGAGATCCGCAAGACCTTTAACATCA 1592294
||||||||||||||||| ||||||||||| || ||||| || |||||||
Sbjct 1545 ATGATCAAGGGCAAGTCTCCCGAGGAGATTCGGAAGACTTTCAACATCA 1497
>seq43553
Length=258
Score = 114 bits (126), Expect = 2e-19
Identities = 132/178 (74%), Gaps = 0/178 (0%)
Strand=Plus/Minus
Query 1574057 CCTGCCGCCCGGACGCCACAAGGTGATCATCCTCGACGAGGCCGACTGCCTCACGTCGGC 1574116
||||||| |||| ||||||||| || ||||||||||||| || ||| || | || ||||
Sbjct 250 CCTGCCGGCCGGCCGCCACAAGCTGGTCATCCTCGACGAAGCTGACAGCATGACCTCGGG 191
Query 1574117 GGCCCAGCAGGCCCTGCGGTCCACCATGGAAAAGCACACCAACACGACGCGCTTTGCCCT 1574176
|||||||| || || || |||||||||| || |||||||||| | || ||| |
Sbjct 190 CGCCCAGCAAGCACTCCGACGAACCATGGAAATCTACTCCAACACGACCAGATTCGCCTT 131
Query 1574177 GGCGTGCAACACGTCGTCGATGGTCATCGAGGCCCTCCAAAGTCGCTGCGCCATTCTG 1574234
|| |||||| ||| | | |||| ||| |||| ||| || |||||||| |||
Sbjct 130 TGCCTGCAACCAGTCCAACAAGATCATTGAGCCCCTACAATCGCGATGCGCCATCCTG 73
>seq27826
Length=861
Score = 93.3 bits (102), Expect = 5e-13
Identities = 257/386 (67%), Gaps = 16/386 (4%)
Strand=Plus/Minus
Query 511949 GGCGTGGACGCCTCGCGCAGTCACACCAACGACATCAACCGCGTGGCCGCCGTGCTGGGC 512008
||||| ||||| ||||| | ||||||||||| | | |||| || ||| | ||
Sbjct 628 GGCGTCGACGCTTCGCGGACATACACCAACGACCTGTGGCAAGTGGTCGAGGTGTTTGGT 569
Query 512009 ATCGAGGCCGCCGTGGCCGTGCTCTTTTCC--GAGATCAAGGCCGTCATCTCCTTTGACG 512066
|||||||| ||| | || ||||| || ||| | | ||| | | |||||||
Sbjct 568 ATCGAGGCAGCCC-GTTCG-GCTCTGGTCAAGGAGTTGACCAACGTGCTGGCGTTTGACG 511
Query 512067 GCACCTACGTCAACGACCGCCACTTTGCGCTGGCCACCGACACCATGTGCTGCCGCGGAT 512126
| ||||||||||| | || ||| |||||||| || || |||| | | | ||||
Sbjct 510 GTTCCTACGTCAACCATCGTCACATTGCGCTGCTGACAGATGTCATGACGTACAGAGGAT 451
Query 512127 CGGTGGTGGCCGTCACGCGCCACGGCTTCAACCGCGCCGACCACGGCTTC-CTGTCGCGG 512185
| | ||| || || || ||||| ||||||| || || ||| | | | ||| |||
Sbjct 450 CCATCTCGGCTGTGACCCGACACGGTATCAACCGTGCTGA-CACTGGTGCTCTGATGCGT 392
Query 512186 GCCTCTTTCGAAGAGACCGTCGACATCCTCTTTGACGCGGCGGCCTTTGCCGAGACCGAC 512245
|||||||| ||||| ||||| ||| | | || || || || | || | || | |
Sbjct 391 TGTTCTTTCGAGGAGACGGTCGAGATCTTGCTCGAGGCTGCCGCGTCTG--GTGAGCTAG 334
Query 512246 AAGATCACCGACG--GCTCGGTGACCGAGCCCATCATCCTGGGCCAGACGGCGCCCATCG 512303
| || |||| | ||||| || || |||| |||||||||| |||||| || |
Sbjct 333 ATGACTGCCGAGGTATCTCGGAGAACG------TCATGCTGGGCCAGATGGCGCCAATGG 280
Query 512304 GCACGGCCATCTCGGACGTGCTCGTG 512329
|||||| | || || |||||| ||
Sbjct 279 GCACGGGTAACTTTGATGTGCTCCTG 254
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 6102707625053317
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