Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Fusarium_20tucumaniae_20[genbank_20GCA_5F001680725.1_202016-07-06] 54,001 sequences; 49,886,306 total letters Query= NC_021923.1 Length=140633 Score E Sequences producing significant alignments: (Bits) Value seq13449 125 6e-24 seq12608 120 3e-22 seq19757 86.0 6e-12 >seq13449 Length=2090 Score = 125 bits (138), Expect = 6e-24 Identities = 449/697 (64%), Gaps = 9/697 (1%) Strand=Plus/Plus Query 139302 CTCGTACTTTTCGTAGAGTTCGTCGAATCGTTCACCGTAGGCGTCAGAAAGATCGCGACA 139361 ||| ||||||||||| || | ||||| || || ||| ||| | ||| || | || Sbjct 1089 CTCATACTTTTCGTAAAGAGCCTCGAACTCCTCGCCATAGCAGTCGGCCAGACCGGGGCA 1148 Query 139362 CTTGTCAGGACACATGAGCGACCATACGCCGTTCGCCTTGACGCGCCTCATGAACAGATC 139421 || || ||||||||||| | ||| | |||||| || ||| ||| ||||||| ||||| Sbjct 1149 CTCGTTGGGACACATGAGGGTCCAGTCACCGTTCTTCTCGACACGCTTCATGAAGAGATC 1208 Query 139422 CGGAATCCACAAAGCGAACAGCAAATCGCGCGCCTTCTTATCTTCCGAACCCATGTTACG 139481 |||||||| | ||| | | || ||||| || || ||| || ||| Sbjct 1209 GGGAATCCAGAGAGCCAGGAACAGGTCGCGGGCGCGGACCTCCTCCTTGCCGTGGTTCTT 1268 Query 139482 TTTCATGTTAAGGAAATCAAAAACGTCAGCGTGCCATGGTTCCAGATAGATGGCCATTGC 139541 || || |||||| ||||| || || |||||||| || || || |||||||| | || Sbjct 1269 GCGCAGGTCAAGGAACTCAAAGACATCTGCGTGCCAGGGCTCAAGGTAGATGGCAAAGGC 1328 Query 139542 GCC---TTTCCGTTTGCCACCTTGATCGACGTGTCGTACAGCATTATTGAATACGCGCAA 139598 || | | |||||||| || ||||||| || ||| || ||||| || || | Sbjct 1329 ACCAGGTCGCTTGTTGCCACCCTGGTCGACGTACCGGGCAGTGTTGTTGAAGACACGAAG 1388 Query 139599 CATCGGCTCCAGACCGCTCGCTGTTCCGTTGGTGCTACGGATGGGACTGTTGCGAGCTCG 139658 ||| || | |||| | | || |||||||| | | |||| | | || || Sbjct 1389 CATGGGGGTGACACCGTTGGAGGTACCGTTGGTACCAGCGATGTAAGAGCCAGTGGCACG 1448 Query 139659 GACGTCATGTACATTGATGCCGATTCCGCCGCCAAATTTGGATATTAAAACGCA-ATCGC 139717 || || || || | |||||| || || | | ||||| || | | || || Sbjct 1449 GATTCGGTGGACGTTCAGGCCGATACCACCCGCCATCTTGGAGATCATGGCACAGGTCTT 1508 Query 139718 GTAATGTCTCGTATATACCTCTTATGCTGTCGTCCTGCATCGTGACCAGAAAGCATGACG 139777 | | || || || ||||| |||||||| || | ||| |||||| |||||||| | Sbjct 1509 G-AGAGTATCATAAATACCCTCAATGCTGTCCTCTTTCATGTCGACCAGGAAGCATGAGG 1567 Query 139778 AAAGTTGCGGTAGTTTCGTGCCGGCTGCAAACAGAGTAGGACTCGCGTGCGTGAACATTT 139837 | || || || | || || || || || || || || || ||||| | || Sbjct 1568 ACAGCTGAGGCTGGGGAGTACCAGCATTGAAGAGGGTGGGGGAGGCATGGGTGAAGAATT 1627 Query 139838 GTTTCGACATCAATTCGTACGTTTCGATGGCGCTCACAATATCCCTTCCGTGGATACCGA 139897 ||||||||| | ||| || || | | | | | ||||||| || ||| |||| Sbjct 1628 TGCTCGACATCAGGTTGTAGGTCTCCAGGACACGCTCAATATCGTCACCCCAGATGCCGA 1687 Query 139898 CAGAGACTCGCATCAGCATATGTTGGATCCGTTCGGCCACCGCGCCCTCGAtttttttCA 139957 |||| || ||||| | ||| || ||| || || | | | ||| || || || | Sbjct 1688 CAGACACACGCATGATCATGTGCTGGGGACGCTCAACAATCTTGCCATCAATCTTGAGGA 1747 Query 139958 GATA--ACCGTTCTCTAGGGTCTTGTAGCCAAAGTAC 139992 | || | || ||| || |||||| ||||||||||| Sbjct 1748 GGTAGGATCG--CTCAAGAGTCTTGAAGCCAAAGTAC 1782 >seq12608 Length=1983 Score = 120 bits (132), Expect = 3e-22 Identities = 165/229 (72%), Gaps = 4/229 (2%) Strand=Plus/Plus Query 24704 ATGCAGATCTTTATTAAAACGCTAACCGGTAAAACTATTACGCTCGAAGTAGAAGCCACC 24763 ||||||||||| | || || || ||||| || || || || || || || ||| | || Sbjct 392 ATGCAGATCTTCGTCAAGACCCTCACCGGAAAGACCATCACCCTTGAGGTGGAATCGTCC 451 Query 24764 GACACAGTAGAAACGGTAAAACAAAAGATCCAAGACAAAGAAGGAATACCTCCCGATCAA 24823 ||||| | || | || ||| |||||||| ||||| ||||| || ||||| |||||| Sbjct 452 GACACCATTGACAATGTGAAATCGAAGATCCAGGACAAGGAAGGCATTCCTCCTGATCAA 511 Query 24824 CAACGTTTGATCTTTGCCGGGAAACAGCTGGAGGATTCGAGAAACATGTCA--GATTATA 24881 || || | ||||||||||| || ||||| ||||| || | | ||| || || | Sbjct 512 CAGCGACTCATCTTTGCCGGCAAGCAGCTCGAGGA--CGGCCGAACTCTCAGCGACTACA 569 Query 24882 ACATTCAAAAGGAATCGACACTACACTTGGTGTTGCGATTGCGCGGAGG 24930 |||| || ||||| ||||| || ||| |||| | || ||||||| || Sbjct 570 ACATCCAGAAGGAGTCGACTCTGCACCTGGTTCTTCGTCTGCGCGGTGG 618 Score = 89.7 bits (98), Expect = 5e-13 Identities = 133/189 (70%), Gaps = 0/189 (0%) Strand=Plus/Plus Query 24719 AAAACGCTAACCGGTAAAACTATTACGCTCGAAGTAGAAGCCACCGACACAGTAGAAACG 24778 || || || || ||||| ||||| || ||||| || || | ||||||| | || | Sbjct 179 AAGACCCTCACTGGTAAGACTATCACCCTCGAGGTGGAGTCTTCCGACACGATCGACAAC 238 Query 24779 GTAAAACAAAAGATCCAAGACAAAGAAGGAATACCTCCCGATCAACAACGTTTGATCTTT 24838 || || ||||||||||| || || || || ||||| || || || || |||| || Sbjct 239 GTCAAGTCGAAGATCCAAGATAAGGAGGGTATTCCTCCTGACCAGCAGCGCCTGATTTTC 298 Query 24839 GCCGGGAAACAGCTGGAGGATTCGAGAAACATGTCAGATTATAACATTCAAAAGGAATCG 24898 ||||| || ||||| |||||| | | | | | || || |||||||| ||||| || Sbjct 299 GCCGGCAAGCAGCTTGAGGATGGCCGCACCCTCGCCGACTACAACATTCAGAAGGAGTCA 358 Query 24899 ACACTACAC 24907 ||||| ||| Sbjct 359 ACACTCCAC 367 >seq19757 Length=865 Score = 86.0 bits (94), Expect = 6e-12 Identities = 113/157 (72%), Gaps = 0/157 (0%) Strand=Plus/Minus Query 24703 GATGCAGATCTTTATTAAAACGCTAACCGGTAAAACTATTACGCTCGAAGTAGAAGCCAC 24762 ||||||||||||| | || || || || || || || || || ||||| || || | | Sbjct 174 GATGCAGATCTTTGTCAAGACCCTCACGGGGAAGACAATCACCCTCGAGGTGGAGTCTTC 115 Query 24763 CGACACAGTAGAAACGGTAAAACAAAAGATCCAAGACAAAGAAGGAATACCTCCCGATCA 24822 |||||| | || | || || |||||||| ||||| || || || || ||||| || Sbjct 114 CGACACCATCGACAACGTCAAGTCCAAGATCCAGGACAAGGAGGGCATCCCCCCCGACCA 55 Query 24823 ACAACGTTTGATCTTTGCCGGGAAACAGCTGGAGGAT 24859 || || | |||||||| || || ||||| |||||| Sbjct 54 GCAGCGACTCATCTTTGCTGGCAAGCAGCTCGAGGAT 18 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 449593913496280