Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Fusarium_20tucumaniae_20[genbank_20GCA_5F001680725.1_202016-07-06]
54,001 sequences; 49,886,306 total letters
Query= NC_024625.1
Length=151109
Score E
Sequences producing significant alignments: (Bits) Value
seq13449 313 2e-80
seq12608 120 3e-22
seq19757 118 1e-21
seq4691 116 4e-21
seq28553 109 5e-19
seq17448 96.9 3e-15
>seq13449
Length=2090
Score = 313 bits (346), Expect = 2e-80
Identities = 1138/1753 (65%), Gaps = 55/1753 (3%)
Strand=Plus/Plus
Query 148053 GACTGGCTCTGGTCAATGAACGCGCCACGGTCAGCGGCCATTTCAATGA---GTCGCTTT 148109
|||||| ||| |||||||| || || ||||| || ||||| | || || | ||||
Sbjct 91 GACTGGGACTGATCAATGAAGGCACCTCGGTCGGCAGCCATCTGAACGACCTGGCGCTG- 149
Query 148110 ATCTTCATCTCCCAGGCCGTCTTGTACAGCCGCTTGATATGATCGGGAATGCCGTCGATG 148169
| ||||||||| | |||||||| || ||||| | |||| ||| | ||||
Sbjct 150 --CGAAATCTCCCAGACGGTCTTGTAGAGGGCCTTGACCTCGGCGGGGATGTTGGGGATG 207
Query 148170 CGCTGCACCGAGCCGCGGTGCGCAAAAATCTGATTGCGCATTTCGTCCGTGTATAGGTTG 148229
||| | || ||| | |||| || | || ||| | |||| | |||
Sbjct 208 TTCTGGATGGAACCGTTCTCGGCAATGATTCGGTTTTTCATGGCATCCGACCACAGGCCC 267
Query 148230 AGCTCGATCAGGTCATCGATCAGATACTGATTCACCACCTGAAACTCGCCGGCGAGCACG 148289
| || | ||||| | || ||| | | || || ||||| |||||||| ||||| ||
Sbjct 268 ATGTCAACAAGGTCCTTGAGCAGCCAGGGGTTGACGACCTGGAACTCGCCAGCGAGGACA 327
Query 148290 CGCCGCAGATACACGTTGCTCGTAAACGGTTCAAACGACTCGTTGTTGCCCAAAATCTGC 148349
|| ||| | || | |||| || | || || || ||||||||||||||| ||||||
Sbjct 328 CGGCGCTGGTAGATGTTGGAGGTGTAAGGCTCGAAGCACTCGTTGTTGCCCAGGATCTGC 387
Query 148350 GCGGTCGTTGCCGTGGGCATGTACGCTACCAGCAGCGAGTTGCGCAAACCGCGATTTTTT 148409
| || | || || ||||| || | |||||| |||||| | ||| | | ||
Sbjct 388 GAAGTACTGGCAGTAGGCATAGGGGCAAGCAGCAGACTGTTGCGAATGCCGTGCTCCTTG 447
Query 148410 ATTTTGCGCTTCAGAGC--CGCCCAGTCCCAGAGCGGCGACGGTGTCACGTTCCACATGT 148467
| | || | | ||| | ||||||||||||| || || |||| ||||||||||
Sbjct 448 ACCT-GCTCC-CGGAGGTTCTCCCAGTCCCAGAGGTCAGAAGGCTTCACATTCCACATGT 505
Query 148468 CGTACTGCAGAATGCCGCGGCTAGCGGGGCTGCCCTCGTACGAGCTGTACGGTCCGTGCG 148527
|| |||| ||||| || ||||| ||||| | | | | ||| || || | |
Sbjct 506 CGAACTGGAGAATACCCTCAGAGGCGGGAGAGCCCTTGAAGGTGGAGTAGGGACCCTCCT 565
Query 148528 CCGCCGCCAGTTCGCAGCTC-GCCTCGAGCGCGCCGTAGTAAATCGTCTCGGCAATTTGC 148586
|| ||||| | ||| | || ||| || | | ||| || |||||| || |||
Sbjct 566 CCTTGGCCAGCT-GCACCGAAGCAGTGAGGGCAGCATGGTAGATGGTCTCGAAGATCTGC 624
Query 148587 CTGTTGAGCA---GCGCCGCCG-ACTCGCTTTCGTACGGCATACGCAGCCGCACAAACGC 148642
|||||||| | ||| | | | | ||| | ||||| ||||| | || ||
Sbjct 625 TTGTTGAGCTCACGAGCCTCGGGAGAC----TCGAAAGGCATGCGCAGAGCAAGGAAAGC 680
Query 148643 GTCGGCAAGGCCCTGTACGCCCACGCCAATGGGCCGGTGTTTAATGTTGGAGAGGCGCGC 148702
|| ||||| ||||| || || || |||||||| |||||| |||||| | ||| ||
Sbjct 681 ATCAGCAAGACCCTGGACACCAACACCAATGGGTCGGTGTCGCATGTTGCTGTTGCGAGC 740
Query 148703 GCTCTCGAGCGGATAGTGGTTGCGGTCGATGATCTTGTCAAGATTGCGCACCACCACCTT 148762
| | || |||||||| |||||| ||| ||| || ||||| || || ||||
Sbjct 741 TTCCGTAACAGGGTAGTGGTTCACGTCGATAATCCTGTTCAGGTTGCGAACGACAACCTG 800
Query 148763 TGTAATTCTGCGCAGCAATTCAAAATCGTA-CTTG--TCATC-TAC--GATGCATCGGTT 148816
||| | | ||| | | || || || | | ||||| || |||| |
Sbjct 801 TGTGACGTCGTGCAACTTCTGGAAGTCATAGCAAGCATCATCGTAGTTGATGAACGAAGG 860
Query 148817 CACGGCGATAGAGGCTAGATTGCACACGGCCGTCTCATCCGGGGCGCTGTACTCTACGAT 148876
|| ||| | ||| || || ||||| || || |||||| ||||||| |||||| | ||
Sbjct 861 CAGGGCCAGAGAAGCAAGGTTGCAGACAGCAACCTCATCAGGGGCGCAGTACTCGATAAT 920
Query 148877 CTCGGCGCACAGATTGCTGCATTTGATCACGCCCACGTTCTTTTGATTGCTCTTGCTGTT 148936
||||| ||| |||||| || ||| ||||| |||||| || |||||||||| |||
Sbjct 921 CTCGGTGCAGAGATTGGAGCTACGGATGGTGCCCAGGTTCTTCTGGTTGCTCTTGCGGTT 980
Query 148937 GCACGCGTCCTTGTACAGCATGTACGGTCCGCCAGTTTCCACCTGCGTTTCCACTATG-- 148994
||| ||||||||| |||||| | || ||| || || ||||| || | |||
Sbjct 981 GCAGTGGTCCTTGTAGAGCATGAAGGGGTTGCCGGTCTCGGTCTGCGCCTCGAGGATGGC 1040
Query 148995 AACCGATGCAGGTCCTGCGCGCGCACTTGCTGCTCGTAGCGACCCT------CCTGCTCG 149048
| | | || | ||| || ||| || || | |||||||| ||| |||
Sbjct 1041 ATACCAG--AGCTTCTGGGC-----CTTCATGGTCTT-GCGACCCTTGCCCGCCTTCTCA 1092
Query 149049 TA--TAAAGTATACAGCCGCTCGAACGCCTCGCCGTAGCAATCGTCGAGACCGGGGCACT 149106
|| | ||| | |||| |||||| ||||||| ||||| ||| | |||||||||||||
Sbjct 1093 TACTTTTCGTAAAGAGCC--TCGAACTCCTCGCCATAGCAGTCGGCCAGACCGGGGCACT 1150
Query 149107 TGTGCGGGCACATGAGCGACCACACGCCGTCCGCGTACACGCGCTTCATAAACAGATCGG 149166
|| || |||||||| | ||| | |||| | | || |||||||| || |||||||
Sbjct 1151 CGTTGGGACACATGAGGGTCCAGTCACCGTTCTTCTCGACACGCTTCATGAAGAGATCGG 1210
Query 149167 GCACCCAGAGCGCGTACATGAGGTCGCGCGCCTTGCAGTCTTCGGCGCCCATGTTGCGGC 149226
| | |||||| || | |||||||| || | || || ||| ||| ||
Sbjct 1211 GAATCCAGAGAGCCAGGAACAGGTCGCGGGCGCGGACCTCCTCCTTGCCGTGGTTCTTGC 1270
Query 149227 GCAGGTTGAGCACGCTGAATATGTCCGCGTGCCACGGCTCAATGTACACCGCGAGCGCGC 149286
|||||| || | || | || |||||||| ||||||| ||| | || | || |
Sbjct 1271 GCAGGTCAAGGAACTCAAAGACATCTGCGTGCCAGGGCTCAAGGTAGATGGCAAAGGCAC 1330
Query 149287 CCTTGCGC---TTGCCGCCCTGGTCGACGTGGCGCACCATGTTGTTAAACACTCGAACCA 149343
| ||| ||||| ||||||||||||| || | ||||||| || || |||| ||
Sbjct 1331 CAGGTCGCTTGTTGCCACCCTGGTCGACGTACCGGGCAGTGTTGTTGAAGACACGAAGCA 1390
Query 149344 TAGGTTCAATGCCACTGGCAGTGCCGTTAGTA-GAGCTAATGCGACTGCCGCGCGCTCGC 149402
| || | || ||| || ||||| ||| ||| ||| | ||| || ||
Sbjct 1391 TGGGGGTGACACCGTTGGAGGTACCGTTGGTACCAGC-GATGTAAGAGCCAGTGGCACGG 1449
Query 149403 ACTTTGTGCACGTTGACGCCGATGCC-GCCGCCGTACTTTGAGATGGCCGCGCAGTCGCC 149461
| | ||| ||||| | |||||| || ||||| | ||| ||||| || |||
Sbjct 1450 ATTCGGTGGACGTTCAGGCCGATACCACCCGCCAT-CTTGGAGATCATGGCACAGGTCTT 1508
Query 149462 GAGCGTCGAGTAGATGCCCTCGATGCTGTCGCGCTTCATGGTCAGCAGAAAGCACGAGCA 149521
||| || || || ||||| |||||||| |||||| | ||| ||||| ||| |
Sbjct 1509 GAGAGTATCATAAATACCCTCAATGCTGTCCTCTTTCATGTCGACCAGGAAGCATGAGGA 1568
Query 149522 CATTTGCGGAAAACGCGTGCCGGCCGCGAACATGGTGGGGCTGGCGTGTGTAAAATATTT 149581
|| || || | || || || ||| | ||||||| ||| || || || ||||
Sbjct 1569 CAGCTGAGGCTGGGGAGTACCAGCATTGAAGAGGGTGGGGGAGGCATGGGTGAAGAATTT 1628
Query 149582 -CTGGCTCATCATCTCGTACGACTCGAGCACGCGGTCCATGTCATCGCCATGGATGCCTA 149640
|| | ||||| | ||| | ||| || || || || || || || || |||||| |
Sbjct 1629 GCTCG-ACATCAGGTTGTAGGTCTCCAGGACACGCTCAATATCGTCACCCCAGATGCCGA 1687
Query 149641 TGGCGACGCGCATCAGCATATGCTGCGGTCGCTCCGCCACTTTGTTTCCAATTTTGAGCA 149700
| || ||||| | ||| ||||| || ||||| | | ||| |||| ||||| |
Sbjct 1688 CAGACACACGCATGATCATGTGCTGGGGACGCTCAACAATCTTGCCATCAATCTTGAGGA 1747
Query 149701 AGTAGCCGTTTTCTAGTGTCTTGTAGCCAAAGTACTTGTAGTCAAAGTCGCGGCCGTGGT 149760
|||| || || |||||| |||||||||||| ||| | ||||| ||| | | |
Sbjct 1748 GGTAGGATCGCTCAAGAGTCTTGAAGCCAAAGTACTGGTATTGGAAGTCACGGTCATAGA 1807
Query 149761 CAATGGCGGCGTC 149773
||||||| | |||
Sbjct 1808 CAATGGCCGAGTC 1820
>seq12608
Length=1983
Score = 120 bits (132), Expect = 3e-22
Identities = 147/199 (74%), Gaps = 4/199 (2%)
Strand=Plus/Minus
Query 133464 GTGGACTCTTTCTGTATATTGTAATCGCCCATCGT--GGACGAGTCCTCGAGCTGCTTGC 133521
|| ||||| ||||| || ||||| |||| | || || || ||||||||||||||||
Sbjct 588 GTCGACTCCTTCTGGATGTTGTAGTCGCTGAGAGTTCGGCCG--TCCTCGAGCTGCTTGC 531
Query 133522 CCGCGTAAATGAGCCGCTGCTGGTCGGGAGGGATGCCTTCCTTGTCGGTGATCTTTTGCT 133581
| || | ||||| ||||| || || ||||| |||||||||||||| |||||| |
Sbjct 530 CGGCAAAGATGAGTCGCTGTTGATCAGGAGGAATGCCTTCCTTGTCCTGGATCTTCGATT 471
Query 133582 TGAGCTGCTCAACCGTGTCGGTGGGCTCCACGTCGACGGTGACGGTTTTGCCGGTCAGAG 133641
| | | |||| ||||||| | ||||| || | ||||| ||| || ||||| || |
Sbjct 470 TCACATTGTCAATGGTGTCGGACGATTCCACCTCAAGGGTGATGGTCTTTCCGGTGAGGG 411
Query 133642 TTTTTACGAAAATCTGCAT 133660
| || ||||| ||||||||
Sbjct 410 TCTTGACGAAGATCTGCAT 392
Score = 111 bits (122), Expect = 2e-19
Identities = 139/188 (74%), Gaps = 2/188 (1%)
Strand=Plus/Minus
Query 133464 GTGGACTCTTTCTGTATATTGTAATCGCCCATCGTG-GACGAGTCCTCGAGCTGCTTGCC 133522
|| ||||| ||||| || ||||| ||| | | ||| | | | ||||| |||||||||||
Sbjct 360 GTTGACTCCTTCTGAATGTTGTAGTCGGCGAGGGTGCGGCCA-TCCTCAAGCTGCTTGCC 302
Query 133523 CGCGTAAATGAGCCGCTGCTGGTCGGGAGGGATGCCTTCCTTGTCGGTGATCTTTTGCTT 133582
||| |||| || ||||||||||| ||||| || || ||||| || |||||| |||
Sbjct 301 GGCGAAAATCAGGCGCTGCTGGTCAGGAGGAATACCCTCCTTATCTTGGATCTTCGACTT 242
Query 133583 GAGCTGCTCAACCGTGTCGGTGGGCTCCACGTCGACGGTGACGGTTTTGCCGGTCAGAGT 133642
|| | || | |||||||| | |||||| |||| ||||| || || || || || ||
Sbjct 241 GACGTTGTCGATCGTGTCGGAAGACTCCACCTCGAGGGTGATAGTCTTACCAGTGAGGGT 182
Query 133643 TTTTACGA 133650
|| ||||
Sbjct 181 CTTGACGA 174
Score = 105 bits (116), Expect = 6e-18
Identities = 148/206 (72%), Gaps = 4/206 (2%)
Strand=Plus/Minus
Query 133457 ATGTATGGTGGACTCTTTCTGTATATTGTAATCGCCCATCGTGGACGA--GTCCTCGAGC 133514
||| | ||| ||||| ||||| || ||||| ||| || || |||| ||| || |||
Sbjct 823 ATGAAGGGTCGACTCCTTCTGGATGTTGTAGTCGGACAGGGT--ACGACCGTCTTCCAGC 766
Query 133515 TGCTTGCCCGCGTAAATGAGCCGCTGCTGGTCGGGAGGGATGCCTTCCTTGTCGGTGATC 133574
||||| || || | || || ||||||||||| || |||||||| |||||||| |||
Sbjct 765 TGCTTACCAGCAAAGATAAGTCGCTGCTGGTCAGGGGGGATGCCCTCCTTGTCCTGAATC 706
Query 133575 TTTTGCTTGAGCTGCTCAACCGTGTCGGTGGGCTCCACGTCGACGGTGACGGTTTTGCCG 133634
|| ||| | | |||| || ||| | | |||||| || | |||| ||| || ||
Sbjct 705 TTGGACTTCACGTTGTCAATGGTATCGCTCGACTCCACCTCCAGAGTGATGGTCTTTCCA 646
Query 133635 GTCAGAGTTTTTACGAAAATCTGCAT 133660
|| ||||| || || || ||||||||
Sbjct 645 GTGAGAGTCTTGACAAAGATCTGCAT 620
>seq19757
Length=865
Score = 118 bits (130), Expect = 1e-21
Identities = 119/155 (77%), Gaps = 0/155 (0%)
Strand=Plus/Plus
Query 133506 TCCTCGAGCTGCTTGCCCGCGTAAATGAGCCGCTGCTGGTCGGGAGGGATGCCTTCCTTG 133565
||||||||||||||||| || | ||||| |||||||||||||| |||||||| ||||||
Sbjct 19 TCCTCGAGCTGCTTGCCAGCAAAGATGAGTCGCTGCTGGTCGGGGGGGATGCCCTCCTTG 78
Query 133566 TCGGTGATCTTTTGCTTGAGCTGCTCAACCGTGTCGGTGGGCTCCACGTCGACGGTGACG 133625
|| |||||| ||||| | || | ||||||| | |||||| |||| |||||
Sbjct 79 TCCTGGATCTTGGACTTGACGTTGTCGATGGTGTCGGAAGACTCCACCTCGAGGGTGATT 138
Query 133626 GTTTTGCCGGTCAGAGTTTTTACGAAAATCTGCAT 133660
|| || || || || || || || || ||||||||
Sbjct 139 GTCTTCCCCGTGAGGGTCTTGACAAAGATCTGCAT 173
>seq4691
Length=3338
Score = 116 bits (128), Expect = 4e-21
Identities = 114/147 (78%), Gaps = 0/147 (0%)
Strand=Plus/Minus
Query 133506 TCCTCGAGCTGCTTGCCCGCGTAAATGAGCCGCTGCTGGTCGGGAGGGATGCCTTCCTTG 133565
||||| ||||||||||| ||| | || || ||||||||||| || |||||||| ||||||
Sbjct 2026 TCCTCCAGCTGCTTGCCAGCGAAGATCAGTCGCTGCTGGTCCGGGGGGATGCCCTCCTTG 1967
Query 133566 TCGGTGATCTTTTGCTTGAGCTGCTCAACCGTGTCGGTGGGCTCCACGTCGACGGTGACG 133625
|| |||||| ||||| | |||| ||||| | || ||| || |||| ||||| |
Sbjct 1966 TCCTGGATCTTGGACTTGACATTGTCAATGGTGTCCGAGGACTCGACCTCGAGGGTGATG 1907
Query 133626 GTTTTGCCGGTCAGAGTTTTTACGAAA 133652
|| ||||| ||||| || || ||||||
Sbjct 1906 GTCTTGCCCGTCAGGGTCTTCACGAAA 1880
>seq28553
Length=603
Score = 109 bits (120), Expect = 5e-19
Identities = 132/177 (75%), Gaps = 2/177 (1%)
Strand=Plus/Minus
Query 133463 GGTGGACTCTTTCTGTATATTGTAATCGCCCATCGTG-GACGAGTCCTCGAGCTGCTTGC 133521
||| ||||| ||||| || ||||||||| | ||| | | | ||||| ||||||||||
Sbjct 602 GGTCGACTCCTTCTGGATGTTGTAATCGGAGAGGGTGCGGCCA-TCCTCAAGCTGCTTGC 544
Query 133522 CCGCGTAAATGAGCCGCTGCTGGTCGGGAGGGATGCCTTCCTTGTCGGTGATCTTTTGCT 133581
| ||| |||| || |||||||||||||| |||||||| |||||||| ||||| ||
Sbjct 543 CGGCGAAAATCAGACGCTGCTGGTCGGGGGGGATGCCCTCCTTGTCCTGAATCTTCGACT 484
Query 133582 TGAGCTGCTCAACCGTGTCGGTGGGCTCCACGTCGACGGTGACGGTTTTGCCGGTCA 133638
||| | || | || || | || ||| || |||| ||| | ||| ||||| ||||
Sbjct 483 TGACATTGTCGATGGTATCCGAGGACTCGACCTCGAGGGTAATGGTCTTGCCCGTCA 427
>seq17448
Length=1204
Score = 96.9 bits (106), Expect = 3e-15
Identities = 92/115 (80%), Gaps = 2/115 (2%)
Strand=Plus/Plus
Query 133463 GGTGGACTCTTTCTGTATATTGTAATCGCCCATCGTG-GACGAGTCCTCGAGCTGCTTGC 133521
|||| ||| ||||| || ||||| |||| || ||| | | | ||||||||||||||||
Sbjct 1091 GGTGCTCTCCTTCTGGATGTTGTAGTCGCTCAGGGTGCGGCCA-TCCTCGAGCTGCTTGC 1149
Query 133522 CCGCGTAAATGAGCCGCTGCTGGTCGGGAGGGATGCCTTCCTTGTCGGTGATCTT 133576
| || | ||||| |||||||||||||| |||||||| |||||||| ||||||
Sbjct 1150 CAGCAAAGATGAGTCGCTGCTGGTCGGGGGGGATGCCCTCCTTGTCCTGGATCTT 1204
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 483094484917240
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