Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Fusarium_20tucumaniae_20[genbank_20GCA_5F001680725.1_202016-07-06]
54,001 sequences; 49,886,306 total letters
Query= NC_026511.1
Length=140913
Score E
Sequences producing significant alignments: (Bits) Value
seq12608 138 1e-27
seq4691 102 7e-17
seq26693 86.0 6e-12
seq19757 86.0 6e-12
seq17448 82.4 7e-11
>seq12608
Length=1983
Score = 138 bits (152), Expect = 1e-27
Identities = 148/193 (77%), Gaps = 2/193 (1%)
Strand=Plus/Minus
Query 35545 CTCCTTTTGAATGTTGTAATCGGCCAAGGTTCGCTCGTCGTCCAGCTGCTTACCCGCAAA 35604
|||||| || |||||||| |||| || ||| || |||| |||||||||||||| |||||
Sbjct 811 CTCCTTCTGGATGTTGTAGTCGGACAGGGTACGACCGTCTTCCAGCTGCTTACCAGCAAA 752
Query 35605 TATCAACCGCTGCTGGTCCGAAGGAACGCTCTCCTTGTCCATGATCTTTTGCTTCAGAGT 35664
|| | ||||||||||| | || | || |||||||||| ||||| ||||| ||
Sbjct 751 GATAAGTCGCTGCTGGTCAGGGGGGATGCCCTCCTTGTCCTGAATCTTGGACTTCA-CGT 693
Query 35665 TG-CCACCGTGTCGCTCGATTCCACCTCCACCGTGATCGTTTTACCCGTCAAAGTTTTCA 35723
|| | | || |||||||| |||||||||| ||||| || || || || | ||| || |
Sbjct 692 TGTCAATGGTATCGCTCGACTCCACCTCCAGAGTGATGGTCTTTCCAGTGAGAGTCTTGA 633
Query 35724 CAAATATCTGCAT 35736
|||| ||||||||
Sbjct 632 CAAAGATCTGCAT 620
Score = 104 bits (114), Expect = 2e-17
Identities = 138/192 (72%), Gaps = 0/192 (0%)
Strand=Plus/Minus
Query 35545 CTCCTTTTGAATGTTGTAATCGGCCAAGGTTCGCTCGTCGTCCAGCTGCTTACCCGCAAA 35604
|||||| || |||||||| ||| | ||||| |||| || |||||||| || |||||
Sbjct 583 CTCCTTCTGGATGTTGTAGTCGCTGAGAGTTCGGCCGTCCTCGAGCTGCTTGCCGGCAAA 524
Query 35605 TATCAACCGCTGCTGGTCCGAAGGAACGCTCTCCTTGTCCATGATCTTTTGCTTCAGAGT 35664
|| | ||||| || || | ||||| || ||||||||| |||||| |||| | |
Sbjct 523 GATGAGTCGCTGTTGATCAGGAGGAATGCCTTCCTTGTCCTGGATCTTCGATTTCACATT 464
Query 35665 TGCCACCGTGTCGCTCGATTCCACCTCCACCGTGATCGTTTTACCCGTCAAAGTTTTCAC 35724
| | |||||| |||||||||||| | ||||| || || || || | || || ||
Sbjct 463 GTCAATGGTGTCGGACGATTCCACCTCAAGGGTGATGGTCTTTCCGGTGAGGGTCTTGAC 404
Query 35725 AAATATCTGCAT 35736
|| ||||||||
Sbjct 403 GAAGATCTGCAT 392
Score = 100 bits (110), Expect = 3e-16
Identities = 125/169 (74%), Gaps = 2/169 (1%)
Strand=Plus/Minus
Query 35545 CTCCTTTTGAATGTTGTAATCGGCCAAGGTTCGCTCGTCGTCCAGCTGCTTACCCGCAAA 35604
|||||| ||||||||||| ||||| | ||| || | || || |||||||| || || ||
Sbjct 355 CTCCTTCTGAATGTTGTAGTCGGCGAGGGTGCGGCCATCCTCAAGCTGCTTGCCGGCGAA 296
Query 35605 TATCAACCGCTGCTGGTCCGAAGGAACGCTCTCCTTGTCCATGATCTTTTGCTTCAGAGT 35664
|||| ||||||||||| | ||||| | |||||| || |||||| ||| | ||
Sbjct 295 AATCAGGCGCTGCTGGTCAGGAGGAATACCCTCCTTATCTTGGATCTTCGACTTGA-CGT 237
Query 35665 TG-CCACCGTGTCGCTCGATTCCACCTCCACCGTGATCGTTTTACCCGT 35712
|| | | ||||||| || |||||||| | ||||| || ||||| ||
Sbjct 236 TGTCGATCGTGTCGGAAGACTCCACCTCGAGGGTGATAGTCTTACCAGT 188
>seq4691
Length=3338
Score = 102 bits (112), Expect = 7e-17
Identities = 131/181 (72%), Gaps = 0/181 (0%)
Strand=Plus/Minus
Query 35547 CCTTTTGAATGTTGTAATCGGCCAAGGTTCGCTCGTCGTCCAGCTGCTTACCCGCAAATA 35606
|||| || |||||||| |||| | |||||| | || ||||||||||| || || || |
Sbjct 2061 CCTTCTGGATGTTGTAGTCGGAAAGGGTTCGGCCATCCTCCAGCTGCTTGCCAGCGAAGA 2002
Query 35607 TCAACCGCTGCTGGTCCGAAGGAACGCTCTCCTTGTCCATGATCTTTTGCTTCAGAGTTG 35666
||| ||||||||||||| || | || |||||||||| |||||| ||| | | |
Sbjct 2001 TCAGTCGCTGCTGGTCCGGGGGGATGCCCTCCTTGTCCTGGATCTTGGACTTGACATTGT 1942
Query 35667 CCACCGTGTCGCTCGATTCCACCTCCACCGTGATCGTTTTACCCGTCAAAGTTTTCACAA 35726
| | ||||| || || ||||| | ||||| || || ||||||| || ||||| |
Sbjct 1941 CAATGGTGTCCGAGGACTCGACCTCGAGGGTGATGGTCTTGCCCGTCAGGGTCTTCACGA 1882
Query 35727 A 35727
|
Sbjct 1881 A 1881
>seq26693
Length=760
Score = 86.0 bits (94), Expect = 6e-12
Identities = 127/180 (71%), Gaps = 0/180 (0%)
Strand=Plus/Plus
Query 41171 TGTGGATGCGCTCGAGGATCAGCTGCGCGACACGATCACCCTTCATCACCACAAAGTCCA 41230
||| ||||||||||||||| ||||| |||| || || |||| | | ||| |||||||
Sbjct 426 TGTAGATGCGCTCGAGGATGAGCTGGGCGATGCGGTCGCCCTCCTTGACCTCAAAGTCGG 485
Query 41231 CGTCGTTGTTGTTCACCATCACTATGCCCACGTTGCCCGTGTAGTCGGGATCGATGACGC 41290
||||||| ||| | | | | || | ||| ||||||||| |||||||| |
Sbjct 486 ACTCGTTGTGGTTGAAGAGGAGGACCTTGACCTGGCCTCTGTAGTCGGCGTCGATGACAC 545
Query 41291 CAGCAGCAATGTCGATCTTGTGCTTCAACGCCAGCCCCGATCGGGGCGCGATCCTACCGT 41350
|||| | ||||||| |||||| | || || || |||||||| || || | ||||
Sbjct 546 CAGCGCCCGTGTCGATGAAGTGCTTGGAGGCGAGACCGGATCGGGGGGCAATGCGGCCGT 605
>seq19757
Length=865
Score = 86.0 bits (94), Expect = 6e-12
Identities = 122/169 (72%), Gaps = 2/169 (1%)
Strand=Plus/Plus
Query 35569 CAAGGTTCGCTCGTCGTCCAGCTGCTTACCCGCAAATATCAACCGCTGCTGGTCCGAAGG 35628
|| ||| || | || || |||||||| || ||||| || | ||||||||||| | ||
Sbjct 6 CAGGGTGCGGCCATCCTCGAGCTGCTTGCCAGCAAAGATGAGTCGCTGCTGGTCGGGGGG 65
Query 35629 AACGCTCTCCTTGTCCATGATCTTTTGCTTCAGAGTTG-CCACCGTGTCGCTCGATTCCA 35687
| || |||||||||| |||||| ||| | |||| | | |||||| || ||||
Sbjct 66 GATGCCCTCCTTGTCCTGGATCTTGGACTTGA-CGTTGTCGATGGTGTCGGAAGACTCCA 124
Query 35688 CCTCCACCGTGATCGTTTTACCCGTCAAAGTTTTCACAAATATCTGCAT 35736
|||| | ||||| || || ||||| | || || ||||| ||||||||
Sbjct 125 CCTCGAGGGTGATTGTCTTCCCCGTGAGGGTCTTGACAAAGATCTGCAT 173
>seq17448
Length=1204
Score = 82.4 bits (90), Expect = 7e-11
Identities = 86/113 (76%), Gaps = 0/113 (0%)
Strand=Plus/Plus
Query 35540 GTACTCTCCTTTTGAATGTTGTAATCGGCCAAGGTTCGCTCGTCGTCCAGCTGCTTACCC 35599
|| |||||||| || |||||||| ||| || ||| || | || || |||||||| ||
Sbjct 1092 GTGCTCTCCTTCTGGATGTTGTAGTCGCTCAGGGTGCGGCCATCCTCGAGCTGCTTGCCA 1151
Query 35600 GCAAATATCAACCGCTGCTGGTCCGAAGGAACGCTCTCCTTGTCCATGATCTT 35652
||||| || | ||||||||||| | || | || |||||||||| ||||||
Sbjct 1152 GCAAAGATGAGTCGCTGCTGGTCGGGGGGGATGCCCTCCTTGTCCTGGATCTT 1204
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 450489308685080
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |