Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Fusarium_20tucumaniae_20[genbank_20GCA_5F001680725.1_202016-07-06] 54,001 sequences; 49,886,306 total letters Query= NC_028094.1 Length=473558 Score E Sequences producing significant alignments: (Bits) Value seq11483 156 1e-32 seq12608 141 3e-28 seq19757 84.2 7e-11 >seq11483 Length=1992 Score = 156 bits (172), Expect = 1e-32 Identities = 229/323 (71%), Gaps = 1/323 (0%) Strand=Plus/Minus Query 349610 GCTGTTATTACTGTACCAGCCTATTTTAATGATGCCCAGCGTTCTGCAACAAAAGATGCT 349669 ||||| | ||||| || ||||| || || || ||||||| || || || ||||| Sbjct 1737 GCTGTCGTCACTGTCCCCGCCTACTTCAACGACTCCCAGCGCCAGGCCACCAAGGATGCC 1678 Query 349670 GGCAGCATTGCGGGGTTAAATGTTCTAAGAATGATTAATGAACCCACTGCTGCAGCAATT 349729 || |||||| || | || ||||| |||| || || |||||||| ||||| || ||| Sbjct 1677 GGTCTCATTGCTGGCCTCAACGTTCTCCGAATCATCAACGAACCCACCGCTGCCGCCATT 1618 Query 349730 GCATATGGGCTTGATAAAATGAGTGACCAAGaaaaaaaTATTCTTATTTTTGATTTAGGT 349789 || || || || || || | || ||| || || |||| || || ||| | ||| Sbjct 1617 GCCTACGGTCTCGACAAGAAGATTGAGGGCGAGCGCAACGTTCTCATCTTCGATCTTGGT 1558 Query 349790 GGTGGTACTTTTGATGTATCACTACTAACACTTGAAGAGGGAATTTTTGAAGTTAAAGCA 349849 ||||||||||| ||||| || || || || |||| ||||| || || || || || | Sbjct 1557 GGTGGTACTTTCGATGTTTCGCTCCTGACCATTGAGGAGGGTATCTTCGAGGTCAAGTCT 1498 Query 349850 ACTGCTGGTGATACACATCTTGGTGGAGAAGATTTTGATAATCGTCTCGTTTCGCATTTT 349909 || || ||||| || || || ||||| || || || || || ||||||||| || ||| Sbjct 1497 ACCGCCGGTGACACTCACCTGGGTGGTGAGGACTTCGACAACCGTCTCGTTAACCACTTT 1438 Query 349910 GTTAAAGAATTTAAGCGTCAAGC 349932 ||||| || || || || ||||| Sbjct 1437 GTTAATGAGTTCAAACG-CAAGC 1416 >seq12608 Length=1983 Score = 141 bits (156), Expect = 3e-28 Identities = 170/231 (74%), Gaps = 0/231 (0%) Strand=Plus/Minus Query 140507 CATACCACCACGTAATCTTAGAACAAGATGAAGAGTAGACTCTTTTTGAATATTATAATC 140566 ||||||||| || | | ||||| || || ||||| ||||| || || || || || || Sbjct 622 CATACCACCGCGCAGACGAAGAACCAGGTGCAGAGTCGACTCCTTCTGGATGTTGTAGTC 563 Query 140567 AGATAATGTTCGCCCATCTTCAAGTTGTTTTCCAGCAAAGATTAGACGTTGCTGATCAGG 140626 | ||||| || || || || || || || |||||||| || || || |||||||| Sbjct 562 GCTGAGAGTTCGGCCGTCCTCGAGCTGCTTGCCGGCAAAGATGAGTCGCTGTTGATCAGG 503 Query 140627 AGGAATTCCTTCTTTATCCTGAATTTTAGCTTTTACATTATCAATCGAATCAGATGGTTC 140686 |||||| ||||| || ||||| || || | ||| ||||| ||||| | || || | ||| Sbjct 502 AGGAATGCCTTCCTTGTCCTGGATCTTCGATTTCACATTGTCAATGGTGTCGGACGATTC 443 Query 140687 AACTTCAAGTGTAACTGTCTTTCCGGTTAGTGTTTTTACAAAAATCTGCAT 140737 || ||||| || | ||||||||||| || || || || || |||||||| Sbjct 442 CACCTCAAGGGTGATGGTCTTTCCGGTGAGGGTCTTGACGAAGATCTGCAT 392 Score = 129 bits (142), Expect = 2e-24 Identities = 169/234 (72%), Gaps = 0/234 (0%) Strand=Plus/Minus Query 140504 TTACATACCACCACGTAATCTTAGAACAAGATGAAGAGTAGACTCTTTTTGAATATTATA 140563 |||| ||| ||||| | | |||||||||||||| || ||||| || || || || || Sbjct 853 TTACTGACCGCCACGGAGACGGAGAACAAGATGAAGGGTCGACTCCTTCTGGATGTTGTA 794 Query 140564 ATCAGATAATGTTCGCCCATCTTCAAGTTGTTTTCCAGCAAAGATTAGACGTTGCTGATC 140623 || || | || || || ||||| || || || ||||||||||| || || ||||| || Sbjct 793 GTCGGACAGGGTACGACCGTCTTCCAGCTGCTTACCAGCAAAGATAAGTCGCTGCTGGTC 734 Query 140624 AGGAGGAATTCCTTCTTTATCCTGAATTTTAGCTTTTACATTATCAATCGAATCAGATGG 140683 ||| || || || || || |||||||| || | || || || ||||| | ||| | Sbjct 733 AGGGGGGATGCCCTCCTTGTCCTGAATCTTGGACTTCACGTTGTCAATGGTATCGCTCGA 674 Query 140684 TTCAACTTCAAGTGTAACTGTCTTTCCGGTTAGTGTTTTTACAAAAATCTGCAT 140737 || || || || || | |||||||| || || || || ||||| |||||||| Sbjct 673 CTCCACCTCCAGAGTGATGGTCTTTCCAGTGAGAGTCTTGACAAAGATCTGCAT 620 Score = 98.7 bits (108), Expect = 3e-15 Identities = 153/219 (70%), Gaps = 0/219 (0%) Strand=Plus/Minus Query 140507 CATACCACCACGTAATCTTAGAACAAGATGAAGAGTAGACTCTTTTTGAATATTATAATC 140566 |||||||||||| | | || || || || || || ||||| || ||||| || || || Sbjct 394 CATACCACCACGGAGGCGGAGGACGAGGTGGAGTGTTGACTCCTTCTGAATGTTGTAGTC 335 Query 140567 AGATAATGTTCGCCCATCTTCAAGTTGTTTTCCAGCAAAGATTAGACGTTGCTGATCAGG 140626 | | || || ||||| ||||| || || || || || || || || ||||| ||||| Sbjct 334 GGCGAGGGTGCGGCCATCCTCAAGCTGCTTGCCGGCGAAAATCAGGCGCTGCTGGTCAGG 275 Query 140627 AGGAATTCCTTCTTTATCCTGAATTTTAGCTTTTACATTATCAATCGAATCAGATGGTTC 140686 |||||| || || ||||| || || || | || || || || |||| || || | || Sbjct 274 AGGAATACCCTCCTTATCTTGGATCTTCGACTTGACGTTGTCGATCGTGTCGGAAGACTC 215 Query 140687 AACTTCAAGTGTAACTGTCTTTCCGGTTAGTGTTTTTAC 140725 || || || || | ||||| || || || || || || Sbjct 214 CACCTCGAGGGTGATAGTCTTACCAGTGAGGGTCTTGAC 176 >seq19757 Length=865 Score = 84.2 bits (92), Expect = 7e-11 Identities = 117/164 (71%), Gaps = 0/164 (0%) Strand=Plus/Plus Query 140574 GTTCGCCCATCTTCAAGTTGTTTTCCAGCAAAGATTAGACGTTGCTGATCAGGAGGAATT 140633 || || ||||| || || || || ||||||||||| || || ||||| || || || || Sbjct 10 GTGCGGCCATCCTCGAGCTGCTTGCCAGCAAAGATGAGTCGCTGCTGGTCGGGGGGGATG 69 Query 140634 CCTTCTTTATCCTGAATTTTAGCTTTTACATTATCAATCGAATCAGATGGTTCAACTTCA 140693 || || || ||||| || || | || || || || || | || || | || || || Sbjct 70 CCCTCCTTGTCCTGGATCTTGGACTTGACGTTGTCGATGGTGTCGGAAGACTCCACCTCG 129 Query 140694 AGTGTAACTGTCTTTCCGGTTAGTGTTTTTACAAAAATCTGCAT 140737 || || | |||||| || || || || || ||||| |||||||| Sbjct 130 AGGGTGATTGTCTTCCCCGTGAGGGTCTTGACAAAGATCTGCAT 173 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1514206013947803