Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Fusarium_20tucumaniae_20[genbank_20GCA_5F001680725.1_202016-07-06] 54,001 sequences; 49,886,306 total letters Query= NC_028110.1 Length=171045 Score E Sequences producing significant alignments: (Bits) Value seq13449 259 5e-64 seq5048 152 6e-32 seq9934 100 3e-16 >seq13449 Length=2090 Score = 259 bits (286), Expect = 5e-64 Identities = 501/733 (68%), Gaps = 30/733 (4%) Strand=Plus/Minus Query 53233 GCGTGTCCGTGAGACGTACGACTTAATG---AGCCAAAAGTACTTTACGCACGCCACGCC 53289 |||||||| ||||| ||| || | ||| ||| || | ||| || || ||| | || Sbjct 1662 GCGTGTCCTGGAGACCTACAACCTGATGTCGAGCAAA---TTCTTCACCCATGCCTCCCC 1606 Query 53290 AACCCTGTTCAACGCTGGTACGAATCACCCTCAGATGTCGAGCTGCTTCCTGGTGGCGAT 53349 ||||| ||||| |||||||| || |||||| |||| ||||||||||| | || Sbjct 1605 CACCCTCTTCAATGCTGGTACTCCCCAGCCTCAGCTGTCCTCATGCTTCCTGGTCGACAT 1546 Query 53350 GAAGGATGACTCGATCGACGGCATCTACGAGACGCTCAAGGAGTGTGCCCACATCTCCAA 53409 ||| || ||| || || || || || || || |||||| |||||| |||||||| Sbjct 1545 GAAAGAGGACAGCATTGAGGGTATTTATGATACTCTCAAGACCTGTGCCATGATCTCCAA 1486 Query 53410 GTGGTCGGGTGGTATCGGTATCCACTGCT--CGAACGTCCGTGCGAACGGCACACCAATC 53467 | | ||||||||||||| | || | |||| ||||||| | ||| | ||| Sbjct 1485 GATGGCGGGTGGTATCGGCCTGAACGTCCACCGAA--TCCGTGCCACTGGCTCTTACATC 1428 Query 53468 AAGGGGACGAACGGCGTCGCCGATGGAATCGTGCCTATGCTCCGCGTCTTCAACAACACG 53527 || || ||||| | || | || || || ||||| || |||||||||||||| Sbjct 1427 GCTGGTACCAACGGTACCTCCAACGGTGTCACCCCCATGCTTCGTGTCTTCAACAACACT 1368 Query 53528 GCCCGGTACGTCAACCAGGGTGGTGGGAAGCGCAAGGGGTCGTTCGCCATCTACCTCGAG 53587 |||||||||||| |||||||||| ||||| || | || ||||||||||| ||| Sbjct 1367 GCCCGGTACGTCGACCAGGGTGGCAACAAGCGACCTGGTGCCTTTGCCATCTACCTTGAG 1308 Query 53588 CCGTGGCACGCCGACATTATGGAGTTTCTCGAGCTGCGTCTGAATCAGGGTGACGAAGAG 53647 || |||||||| || | | ||||| || || ||||| ||| || || | || ||| Sbjct 1307 CCCTGGCACGCAGATGTCTTTGAGTTCCTTGACCTGCGCAAGAACCACGGCAAGGAGGAG 1248 Query 53648 ATGCGCTGCCGTGACCTGTTTACAGCTCTGTGGATTCCGGACCTCTTCATGCAAAAGGTG 53707 | ||| ||| |||||||| ||||| |||||||| || ||||||||| | || Sbjct 1247 GTCCGCGCCCGCGACCTGTTCCTGGCTCTCTGGATTCCCGATCTCTTCATGAAGCGTGTC 1188 Query 53708 GAGAAGGACGAGGAGTGGTACCTGATGTGCCCGAACGAGTGCCCCGGCCT-CCAGGGTGT 53766 |||||| ||| || ||| ||| ||||| || |||||||||||||| || | | || Sbjct 1187 GAGAAGAACGGTGACTGGACCCTCATGTGTCCCAACGAGTGCCCCGGTCTGGCCGACTG- 1129 Query 53767 CTACGGTGAGGAGT---------TTAACGAGATGTATCGGACGTACGCAGTTCAGGGCCG 53817 ||| || ||||||| || |||| | |||| || | | || | |||| || Sbjct 1128 CTATGGCGAGGAGTTCGAGGCTCTTTACGAAAAGTAT--GA-GAAGGCGGGCAAGGGTCG 1072 Query 53818 CTACAAGAAGAAGGTCAAGGCGCGTGAGGTATGGGATGCAATCCTCAAGAGCCAGGTGGA 53877 | |||| | ||||| | || | ||| |||| |||||| || ||| || Sbjct 1071 C------AAGACCATGAAGGCCCAGAAGCTCTGGTATGCCATCCTCGAGGCGCAGACCGA 1018 Query 53878 GACGGGAACGCCGTACATGTGCTACAAGGATTCGGTCAACGAGAAGAGCAACCAGAAGAA 53937 ||| || | || | |||| ||||||||| |||| ||||||||||||||||| Sbjct 1017 GACCGGCAACCCCTTCATGCTCTACAAGGACCACTGCAACCGCAAGAGCAACCAGAAGAA 958 Query 53938 CATCGGCGTCATC 53950 | | ||| |||| Sbjct 957 CCTGGGCACCATC 945 Score = 95.1 bits (104), Expect = 1e-14 Identities = 541/846 (64%), Gaps = 52/846 (6%) Strand=Plus/Minus Query 55096 TGACTTTGACAAGCTTCACGAAGTGACGCGTGTTGTGACTCGGAACCTGAACCGGGTCAT 55155 |||||| | ||| | ||||| || || | ||||| ||| ||||||||| || | || Sbjct 828 TGACTTCCAGAAGTTGCACGACGTCACACAGGTTGTCGTTCGCAACCTGAACAGGATTAT 769 Query 55156 CGACAAGAATTACTACCCG---ACTGAAGCGGCGCGCAAGTCCAACCTCCGGCACCGGCC 55212 |||| ||| ||||||| || ||||| ||||| |||| | || ||||| || Sbjct 768 CGACGTGAACCACTACCCTGTTACGGAAGCT---CGCAACAGCAACATGCGACACCGACC 712 Query 55213 CATCGCCATCGGTGTACAGGGCTTGGCCGACATCTTCATGATGCTCGGAT--TGCCCTTC 55270 ||| | | ||||| ||||| | || || ||| | ||||| | |||| ||| Sbjct 711 CATTGGTGTTGGTGTCCAGGGTCTTGCTGATGCTTTCCT--TGCTCTGCGCATGCCTTTC 654 Query 55271 GACTCGGAACCTGCTCGAGAAATTAACCAGGACATCTTC-AGTCGCATCTACTTTGCAGC 55329 || || ||||| || | ||| || | |||||| || | ||||||| ||| || Sbjct 653 GAGTCTCCCGAGGCTCGTGAGCTCAACAAGCAGATCTTCGAGAC-CATCTACCATGCTGC 595 Query 55330 GCTCGAGGAGTCGTGTCATCTGGCTATGAGCGAGGGGACCTACGAGACGTTCCGTGATTC 55389 ||| | ||| || ||||| | | ||||| ||||| || ||| | || Sbjct 594 CCTCACTGCTTCGGTGCAGCTGGCCAAGGAGGAGGGTCCCTACTCCACCTTCAAGGGCTC 535 Query 55390 GCCAGCTGACAAGGGACTTCTCCAGTTCGATCTATGG---GGCAAG---TCTGACCCCAT 55443 || || |||| ||||||||||||| | ||| | ||| ||||||| | Sbjct 534 TCCCGCCTCTGAGGGTATTCTCCAGTTCGACATGTGGAATGTGAAGCCTTCTGACCTCTG 475 Query 55444 G---TTTGACAAGTT---GAAGCATGACATTCACTTGTGGGGCCTACGCAACTCCCTGCT 55497 | | || || | | |||| | || | | ||| | |||||| ||||| Sbjct 474 GGACTGGGAGAACCTCCGGGAGCAGGTCAAGGA---GCACGGCATTCGCAACAGTCTGCT 418 Query 55498 CGTGGCGCCAATGCCAACCGCGTCGACGGCTCAGATCATGGGCAACAACGAGGCGTTCGA 55557 | || || ||||| || || || | |||||| |||||||||||||| ||||| Sbjct 417 GCTTGCCCCTATGCCTACTGCCAGTACTTCGCAGATCCTGGGCAACAACGAGTGCTTCGA 358 Query 55558 GCCGTACACGACCAACATCTACCTGCGCCGGACCCTAGCAGGTGAGTTTGTCATGATCAA 55617 ||| ||||| |||||||||||| |||||| ||| || || |||| || | || Sbjct 357 GCCTTACACCTCCAACATCTACCAGCGCCGTGTCCTCGCTGGCGAGT---TCCAGGTCGT 301 Query 55618 CAAGCAC---CTCGTCAAGGACCTGCAGAAGATCAACAAGTGGAACCCGCAG--ATCAAG 55672 ||| | | || |||||||||| | || | |||| | | | || || Sbjct 300 CAACCCCTGGCTGCTCAAGGACCTTGTTGACATGGGCCTGTGG--TCGGATGCCATGAAA 243 Query 55673 A--CGGAT-ATTGTGCGGAACGGGGGGTCCGTCCAGA--ATCTGGAGATTCCTCTGCG-T 55726 | || || |||| |||| || ||| |||||| ||| | ||| | || Sbjct 242 AACCGAATCATTGCCGAGAAC---GGTTCCATCCAGAACATCCCCAACATCCCCGCCGAG 186 Query 55727 CTCAAGGAGATTTACCGGACGGTGTGGGAGATTCCACAG---AAGAGTCTGATTGACATG 55783 |||||| | ||| ||| || ||||||||| | ||| || ||| || | ||| Sbjct 185 GTCAAGGCCCTCTACAAGACCGTCTGGGAGATTTCGCAGCGCCAG-GTC--GTTCAGATG 129 Query 55784 AGTGCTGATCGTGGTGCGTACATCGACCAGTCCCAGTCTCTGAACATCTTCATGGAGAAT 55843 ||| || || ||||| | ||| || ||||||||||| || |||||| |||| || | Sbjct 128 GCTGCCGACCGAGGTGCCTTCATTGATCAGTCCCAGTCCCTCAACATCCACATGAAGGAC 69 Query 55844 CCTTCACTGGCCAAGTTGAGCTCGATGCACTTTTACGGGTGGAAGAAGGGACTCAAGACG 55903 || | ||| |||| | | | ||||||||| ||| |||||| || || |||||| Sbjct 68 CCCACCATGGGCAAGATCACCAGCATGCACTTTGCCGGCTGGAAGCTCGGCCTGAAGACG 9 Query 55904 GGTATG 55909 || ||| Sbjct 8 GGCATG 3 >seq5048 Length=3565 Score = 152 bits (168), Expect = 6e-32 Identities = 244/347 (70%), Gaps = 10/347 (3%) Strand=Plus/Plus Query 117299 AGGCGAGTGAAAATGTAACGAGAGCTTGCAGCATCCTTGCCACCAGCAAGACGCGTACCG 117358 || ||||| || | ||||||| || || |||||| ||||| || || || | |||| Sbjct 921 AGTCGAGTAAAGGTATAACGAGGACTGGCGGCATCCGAACCACCTGCGAGTCGAGAACCG 980 Query 117359 AATTGTCCACTCGGCTCCAAGAGGTTCAGGTTGTTGGCGCCCACAAAGTTTTGAGCCAAG 117418 || | |||||| ||||| | | ||| | |||||| | ||||||||||| || |||| Sbjct 981 AAGTTTCCACTTGGCTCTAGGCAGTTGATGTTGTTCGATCCCACAAAGTTCTGGGCCAGA 1040 Query 117419 TTGACAATCGTACCTTGGAGGCTCGCCTCACCATGGTGATACGCCGTCTGCTCCGCCACG 117478 || || || ||||| || ||||| ||||| || |||||||| || | ||| Sbjct 1041 CCGATGATGGTCTGCTGGAGAGATGCTTCACCGTGGTGGTATGCCGTCTGTTCAGACACA 1100 Query 117479 TAGCCCGCCAGCTGAGCCACCTTCATGTC--TGACGTCAGGTTCTTCTTGAGGCAGGCAT 117536 || || |||| | |||||||| |||| |||| |||||| |||||| ||| || | Sbjct 1101 TAACCAGCCAATTCCACCACCTTCTTGTCCTTGAC--CAGGTTTCTCTTGAAGCAAGCGT 1158 Query 117537 AAATCACCTTGCGCTGACTTGGCTTCAGACCATCCGCCACGTGAGGGATCGAACGCTTGA 117596 | | ||||||||||||| ||||| | |||||| || ||||||||| ||| | Sbjct 1159 AGAGAACCTTGCGCTGACCAGGCTTGAAGCCATCCAGGACCGAAGGGATCGATCGC---A 1215 Query 117597 TGTCCTCAGC---GCTAAAGTTGGCCAAGTCCCGGTGGATGAAATCA 117640 ||| ||||| ||| ||| | | ||||||| |||||||||| Sbjct 1216 TGTTATCAGCCATGCTGAAGAGGATGAGCTCCCGGTTGATGAAATCA 1262 Score = 129 bits (142), Expect = 6e-25 Identities = 205/294 (70%), Gaps = 0/294 (0%) Strand=Plus/Plus Query 152026 CGCGTGAAGATGTATCGGGAGCTGGCCGCATCCTTGCCACCTGCCAGCCGCGTTCCAAAC 152085 || || ||| | || || | ||||| |||||| |||||||| || || | || || Sbjct 924 CGAGTAAAGGTATAACGAGGACTGGCGGCATCCGAACCACCTGCGAGTCGAGAACCGAAG 983 Query 152086 TGTCCAGAGGGCTCGAGGAGGTTGAGGTTGTTGGCGCCCACGAAATTCTGAGCCAAATTC 152145 | |||| ||||| ||| ||||| |||||| | ||||| || ||||| |||| | Sbjct 984 TTTCCACTTGGCTCTAGGCAGTTGATGTTGTTCGATCCCACAAAGTTCTGGGCCAGACCG 1043 Query 152146 ACAATCGTGCCCTGCAGACTCGCTTCACCGTGGTGATACGCCGTCTGCTCCGCGATGTAT 152205 | || || ||| ||| |||||||||||||| || |||||||| || | | || Sbjct 1044 ATGATGGTCTGCTGGAGAGATGCTTCACCGTGGTGGTATGCCGTCTGTTCAGACACATAA 1103 Query 152206 CCCGCCAACTGCGCCACCTTCATGTCCGTCGTCAGGTTCTTCTTGAGACAGGCGTAAATC 152265 || ||||| | | |||||||| ||||| | |||||| |||||| || ||||| | Sbjct 1104 CCAGCCAATTCCACCACCTTCTTGTCCTTGACCAGGTTTCTCTTGAAGCAAGCGTAGAGA 1163 Query 152266 ACCTTGCGCTGGGATGGTTTCAAACCGTCCACCACGTGAGGAATCGAACGCTTG 152319 ||||||||||| || || || || |||| || ||| ||||| ||| || Sbjct 1164 ACCTTGCGCTGACCAGGCTTGAAGCCATCCAGGACCGAAGGGATCGATCGCATG 1217 Score = 96.9 bits (106), Expect = 4e-15 Identities = 229/341 (67%), Gaps = 4/341 (1%) Strand=Plus/Plus Query 118003 GTTCAGCACGAGCCCCTTGATATGGGAACCGTCCAGATCCGCATCGGTCATGATCATCAG 118062 ||| | || ||| ||||||||||| ||| || ||||| ||| |||||||||||||| Sbjct 1673 GTTGATCAGGAGACCCTTGATATGACTACCATCGTGATCCTGATCAGTCATGATCATCAG 1732 Query 118063 GCGGCCGTACCGTAAATCTCTCAGGGAGT-TATAAACCTTACCATGTTGGAGCCCGAGGA 118121 ||||||| || || |||| | | | | || |||| || | || || |||| Sbjct 1733 ATGGCCGTATCG-AAGACTCTTGGTGTCTGTGTACACCTGCTTGTGCTTCAGACCCAGGA 1791 Query 118122 TCTTTTTAAGGTTGGAAAATTCCTCATTTTCCGTCACCTGTTTTATGGTGGCGTCCCGAA 118181 || || | ||| | ||||| || | || | ||| | | | |||| || || | Sbjct 1792 ACTGCTTGATGTTCTGGATTTCCTGGTTCTTGGTGATCTGGTCGACGCTGGCATCGCGGA 1851 Query 118182 CGTTGCGCGGCTTACCCCGCAGTGGAAACACGCCAAACTTGTCACGGCCCA-CAACGCTC 118240 ||||| || |||||| || ||||| || || |||| | ||| || | | | |||| Sbjct 1852 CGTTGAGCATCTTACCACGGAGTGGGAAGACACCAATGTGGTCGGGGTCAAGGATGGCTC 1911 Query 118241 AAGCCGGCAATAGCAAGGGCCTTCGCCGAGTCACCCTCGGTAATAATAAGAGTGCACTCG 118300 || | || ||| || |||| || |||||||| || || | || ||||||||||| Sbjct 1912 -GTCCAGAAACAGCCAGACCCTTGGCGGAGTCACCTTCAGTCAGGATCAGAGTGCACTCA 1970 Query 118301 GTGCTGCGATGAGTACCGGCCCAATTAGCATCATCCAGCTT 118341 || || ||||||| ||| | || || || ||||||| Sbjct 1971 TGGCCTCGGCGAGTACCTGCCAAGTTGGCCTCGACCAGCTT 2011 >seq9934 Length=2663 Score = 100 bits (110), Expect = 3e-16 Identities = 535/836 (64%), Gaps = 58/836 (7%) Strand=Plus/Plus Query 74463 TAATCACCGACCCGCTTTTCAAAAAAGTTGGTCTTCCCTTCCAACGAGATGTTCTCCATC 74522 || |||||||| ||||| || || ||||||||||| || | | |||||||||||||| Sbjct 89 TAGTCACCGACACGCTTCTCGAAGAAGTTGGTCTTGCCACCGAGGGAGATGTTCTCCATG 148 Query 74523 CAGTCGAAAGGGTTCTTTGCACCGTAAATAGGCTTCTCCC--CAAACTGTGCC-ATGAGG 74579 ||||||| ||||| | || ||| | |||||| | | | | | | |||| Sbjct 149 AAGTCGAAGGGGTTGGTGGCCTTGTAGAC---CTTCTCGTTGCCGAGGGCGACGAGGAGG 205 Query 74580 CGATCCGCCACAAATTGAATGTACTGCGTCATTTCTCCCGCATCCATGCCGATGAGTTTG 74639 || || || || || | ||||||||| |||| | || | |||||||| || | Sbjct 206 CGGTCGGCGACGAACTCGATGTACTGCTTCATGAGGTCGGCGTTCATGCCGAGCAGGGCG 265 Query 74640 CACGGCAGTGCCTCGGTGATAAACTCACTCTCCACCTCGCAAGCCCATTGGACA--ATCT 74697 || || || |||||||| | ||||| ||| | | | | ||| || | || | Sbjct 266 CAGGGGAGGGCCTCGGTCAGGAACTCCTGCTCAA--TGGTGACGGCATCGGTGATGATGT 323 Query 74698 TGTGAATGTCTT------TGGAAGGGCACTTTTCCCTCAGGTGAGAGTAAAGC-GTCACG 74750 || ||| | | ||| | ||| ||| ||||| |||| || | || | Sbjct 324 CCTGGATGACCTGCTTGCTGGCACGGCCCTTG------AGGTGGGAGTGGAGGAGGCATG 377 Query 74751 GCAAACTCCTGATGCGAG--CCTTCATCTCTGCTTATCAATTCATTCGAAAACGAAAGGC 74808 |||| || | || || || || || | || | || || ||||| | |||| Sbjct 378 -CAAAGTC--GGTGTGAAGACCCTCGTCACGAGAGATGAGCTCGTTGGAAAAGGTCAGGC 434 Query 74809 CAGGCATAAGTCCACGCTTCTTCAACCAAAAGATGGCACAGAAGGAACCACTGAAGAAGA 74868 ||||||| || ||||||||||| | ||| ||||||| |||| ||| |||||||||| Sbjct 435 CAGGCATGAGGCCACGCTTCTTGAGCCAGAAGATGGAGGCAAAGGCACCGCTGAAGAAGA 494 Query 74869 TGCCTTCGACACACGCAAAGGCGACAAGGCGTTGCGCGAACG----GTGCATCGGAAGTC 74924 | || ||||| ||||| ||||| || || || || || | || | | ||| Sbjct 495 TACCCTCGACGGCAGCAAAAGCGACGAGACGCTGAGCAAAGGACGAGTTCTT-----GTC 549 Query 74925 ----ATCCAAGTCTGA--GCCCATTCAGCTTTTCGTTTGACCGCA-GGGACAGTATCGAT 74977 ||||| || || ||||| || || ||| | | ||| |||| || || || Sbjct 550 CTGGATCCA--TCGGATGGCCCAGTCGGC-CTTCTTGCGGATGCAGGGGATGGTCTCAAT 606 Query 74978 CGCTTGGAAGAGGCTTGCCTTC--TCTTCGGGATCCTTGACGAGCTTGTCAATCATAAGT 75035 || | ||||||| | ||| | | || ||||||| | ||||||| | || Sbjct 607 GGCGTTGAAGAGG--TAGGTTCGTTGAGCAGGCTCCTTGATGTAGGTGTCAATGAGGAGC 664 Query 75036 GAGTACGTCTCCGAATGAATCGACTCGTTGAACGACTGGTACGCGTAGAAAGACCGCGCC 75095 ||||| ||||| || || || ||| | | |||| | ||||||| | || ||| Sbjct 665 GAGTAGGTCTCGGAGTGGATGTTCTCCATCATGATCTGGAAGCCGTAGAAGCATCGGGCC 724 Query 75096 TCTGCAATCTGTACAT--CCTTTGAAAAATTCATGTCGATATTCTCCATGACGATGCCGT 75153 || | ||||| || | || |||| || | | | ||||| |||||||||||| Sbjct 725 TCGGGGATCTGGACCTCGCCGCTGAATCGCTC--GACAAGGTTCTCGTTGACGATGCCGT 782 Query 75154 CCGAGGCGGCGAAAAAAGCCAGTACCATTTTGATAAAGTGGCGCTCATCGTCAGT---GA 75210 | || || ||||| || || || | || ||| |||| ||| |||| | Sbjct 783 CAGATGCAGCGAAGAAGGCGAGGATGTGGGAGACGAAGAACTGCTCGTCGGCAGTCAGGC 842 Query 75211 GTTTGTCCCAATCCTTCAGGTCCCCCGCCAAATCAATCTCCTCGACCGTCCAGAAA 75266 | |||| ||| || | || ||| | ||||||||||||||| | ||||||||| Sbjct 843 GGTTGTTCCAGTCGTGGAGATCCTTGGATAAATCAATCTCCTCGGCAGTCCAGAAA 898 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 546846622359800