Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Fusarium_20tucumaniae_20[genbank_20GCA_5F001680725.1_202016-07-06] 54,001 sequences; 49,886,306 total letters Query= NC_030842.1 Length=115510 Score E Sequences producing significant alignments: (Bits) Value seq14164 118 8e-22 seq6254 82.4 6e-11 >seq14164 Length=1493 Score = 118 bits (130), Expect = 8e-22 Identities = 202/289 (70%), Gaps = 7/289 (2%) Strand=Plus/Plus Query 27025 TGAGGGTCGTAACCCTCCAGGGAGAAATCCTCTGCCTTAAAGTCGTCCAGGCTCTCCACC 27084 |||||||| || |||| | |||||||| ||||| | |||| | ||| ||| || Sbjct 1038 TGAGGGTCATAGCCCTTGATAACAAAATCCTCCGCCTTCCACCCGTCGATGCT-TCCGCC 1096 Query 27085 CTCCTGT----TTATCCTCAGTGTGGGAAAGGGTCTGGGCTCCCTCTCGAGCTGAGTCTT 27140 || || | | ||| ||| |||||| | |||||| | ||| ||||| || || Sbjct 1097 CTTCTCTCGAGTAATCTCCAGCTCTGGAAAGTCACGGGGCTCGCGCTCAAGCTGCGTGTT 1156 Query 27141 CAGCGGTTCCACGTGATCCAGGTAGACGTGAGCGTCTCCCAGGGTGTGGACAAACTCTCC 27200 || | |||||||| || ||||||||||| || || |||| | ||| | | || | Sbjct 1157 GAGAGCATCCACGTGGTCGAGGTAGACGTGCGCATCGCCCATGACGTG-AGTGAGGCTGC 1215 Query 27201 C-GGTTCTAGCCCGGTGACGTGAGCCATCATGTACGTGAGGAGAGAGTAGCTGGCGATGT 27259 | || | | || |||||| |||||||||| || || || | ||||||||| |||| Sbjct 1216 CAGGCACCAATTCGCAGACGTGCGCCATCATGTGTGTCAGCAGTGCGTAGCTGGCAATGT 1275 Query 27260 TAAAGGGTACCCCGAGCCCCATGTCCCCCGACCTCTGGTAGAGCTGACA 27308 | || || || ||||| |||||||| | || | |||||||||||| || Sbjct 1276 TGAACGGGACGCCGAGACCCATGTCGCAGGATCGCTGGTAGAGCTGGCA 1324 >seq6254 Length=3599 Score = 82.4 bits (90), Expect = 6e-11 Identities = 130/180 (72%), Gaps = 6/180 (3%) Strand=Plus/Plus Query 48510 CGTCAAGGTGAGGCTGAGGACCCCCAGGCACCCAGAGATGGGTGACAAGTTTGCGTC-CT 48568 ||||||||| | ||||||| ||| | || |||| || ||||||||||| || | Sbjct 3131 CGTCAAGGTCCGTGTGAGGACGACCAAGATTCCCCAGATTGGCGACAAGTTTGCCTCTCG 3190 Query 48569 TCACGGCGCAAAAGGGGACATGTGGAGCCGTCCTGACC--CAGGAGGACATGCCCTTCGA 48626 |||||| || ||||| || ||| | | | | ||| |||||||| ||||||||| Sbjct 3191 TCACGGA-CAGAAGGGTACCATTGGTGT-GACGT-ACCGTCAGGAGGATATGCCCTTCAG 3247 Query 48627 CAAGGACGGGGTGGTGCCCGACCTCATCATCAACCCCCACGCCTTTCCCTCCAGGATGAC 48686 || ||| || ||| || ||| | ||||| |||||||||||| |||| || | ||||| Sbjct 3248 CAGGGAGGGTGTGACACCGGACATTATCATTAACCCCCACGCCATTCCGTCGCGAATGAC 3307 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 369264013570631