Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Fusarium_20udum_20[genbank_20GCA_5F002194535.1_202017-06-15] 712 sequences; 56,380,608 total letters Query= NC_001611.1 Length=185578 Score E Sequences producing significant alignments: (Bits) Value seq223 167 3e-36 >seq223 Length=6419709 Score = 167 bits (184), Expect = 3e-36 Identities = 703/1102 (64%), Gaps = 20/1102 (2%) Strand=Plus/Plus Query 53756 ATTATCTCAGTGCAAAGATTACTACACTTGATGGTTCCTAAATTTTGTTGATTACTCTTT 53815 || || ||||||||||| || | |||||| || | || | ||| || ||||| Sbjct 1881868 ATAATTTCAGTGCAAAGGTTGGAGCTTCGGATGGTACCGAGGTTCTTTTGGTTGCTCTTG 1881927 Query 53816 TTGTTACACGCATCCTTATAAAGAATGAATGGCGTACCAGTTTCAATCTGGGATTCTATA 53875 ||| || |||||||| || || |||||||| | || || ||| |||||| || | | Sbjct 1881928 CGGTTGCAGGCATCCTTGTAGAGCATGAATGGGTTTCCGGTCTCAGTCTGGGCCTCAAGA 1881987 Query 53876 ATCGCTTTCCAGACGACACGAGCCTTTATTATAGATTTGTATCTCTTTTCT--CTT-TCG 53932 || || | ||| | ||||||| || | ||| | ||| | ||| ||| Sbjct 1881988 ATGGCGTACCACAGCTTCTGAGCCTTGATGGTC---TTGCGACCCTTACCCGCCTTCTCG 1882044 Query 53933 TATAGTGTATACAATCGTTCAAACTCGTCTCCCCAAACATTGTCCAATCCAGGACATTCA 53992 || | |||| |||||||| ||||| | | | | | ||||| || || Sbjct 1882045 TACTTTTCGTACAGAGCCTCAAACTCCTCTCCGTAGCAGTCGGCGAGGCCAGGGCACTCG 1882104 Query 53993 TCCGGACACATCAACGACCACTCTCCGTCATCCTTCACTCGTTTCATAAAGAGATCAGGA 54052 | || ||||||| | ||| || |||| | | || || ||||| || ||||| || Sbjct 1882105 TTAGGGCACATCAGTGTCCAGTCACCGTTCTTTTCAACGCGCTTCATGAAAAGATCGGGG 1882164 Query 54053 ATCCAAAGAGCTATAAATAGATCTCTGGTTCTATGTTCCTCGTTTCCTGTATTCTTTTTA 54112 |||||||| || | || || || | || | | ||||| || || ||||| Sbjct 1882165 ATCCAAAGGGCAAGGAAAAGGTCACGGGCACGAACCTCCTCCTTACCGTGGTTCTTACGG 1882224 Query 54113 AGATCGAGGAACGCCATAATATCAGAATGCCACGGTTCCAAGTATATGGTCATAACTCCA 54172 ||||| ||||| | | | ||| || ||||| || || | ||| |||| | | | || Sbjct 1882225 AGATCAAGGAATTCGAAGACATCGGAGTGCCAAGGCTCGAGGTAGATGGCAAAAGCACCG 1882284 Query 54173 GGCCGTTTGTTTCCTCCCTGATCTATG------TATCTAGCGGTGTTATTATAAACTCTC 54226 || || ||||| || ||||| || | ||| ||||| || | || | Sbjct 1882285 GGTCGCTTGTTGCCACCCTGGNNNNNNNNNNCATACCGAGCAGTGTTGTTGAACACACGA 1882344 Query 54227 AACATTGGAATAATACCATTGGATGCACCATTGGTCCCGGAGATATAGCTTCCACTGGCA 54286 | ||| |||| || ||| || |||| ||| ||||| |||| ||| || ||| | ||| Sbjct 1882345 AGCATAGGAACAACACCGTTCGATGTACCGTTGGTACCGGCGATGTATGAGCCAGTAGCA 1882404 Query 54287 CGAATAT--TACTAATTGATAGACCTATCCCCCCTGCCATTTTAGAGATTAATGCGCATC 54344 || ||| | | ||| | |||| || || || ||||| || ||||| | || || Sbjct 1882405 CGGATACGGTGCACATTCA--GACCAATACCACCAGCCATCTTGGAGATCATGGCACAGG 1882462 Query 54345 GTTTTAACGTATCATAGATGCCCTCTATACTATCATCCATCATGTTAAGTAGAAAACAGC 54404 || | ||||| ||||| ||||| ||||| |||||| |||| | || | || || Sbjct 1882463 TCTTGAGAGTATCGTAGATTCCCTCAATACTGTCATCCTTCATATCAACCAAGAAGCAAG 1882522 Query 54405 TAGACATTTGGTGACGACTAGTTCCCGCATTAAATAAGGTAGGAGAAGCGTGCGTAAACC 54464 |||| |||| | || || || || || || | || || ||||| ||||| || Sbjct 1882523 ATGACAATTGGGGCTGAGGGGTGCCGGCGTTGAAGAGCGTGGGGGAAGCATGCGTGAAGA 1882582 Query 54465 ATTTTTCAGAAAGTAGATTGTACGTCTCGATAGCTGAGTCTATATCC-CATTGATGAATT 54523 | || || | |||||||| ||||| | || || ||||| || || | Sbjct 1882583 ACTTGCTGGACATCAGATTGTATGTCTCCAAGACTCGCTCGATATCATCACCCCAGA-TA 1882641 Query 54524 CCTACTGCGACACGCATTAACATGTGCTGAGGTCTTTCAACGATCTTGTTGTTTATTTTC 54583 || || | |||||||| | |||||||||||| | || || ||||| || || || Sbjct 1882642 CCAACAGACACACGCATGATCATGTGCTGAGGGCGCTCGACAATCTTACCGTCAATCTTG 1882701 Query 54584 AGCAAGTAGGATTTTTCCAAAGTTTTAAAACCAAAATAGTTGTATGAAAAGTCTCGTTCG 54643 || | ||| ||| |||||||| || || ||||| || | |||| || || || || Sbjct 1882702 AGGAGGTATGATCGCTCCAAAGTCTTGAAGCCAAAGTATTGGTATTGGAAATCGCGGTCA 1882761 Query 54644 TAAATAATAACTGAGTTGAGTTTATCCTTATATTTGTTAACTACATCCATGGTAATACTT 54703 |||| ||| | |||| | | ||||||| | | || || ||| | | ||| Sbjct 1882762 TAAACAATGGCAGAGTCCAACTCCTCCTTATGTCGCATGAC-GCACTCATAGGTCTCCTT 1882820 Query 54704 -GAAATAATCGGAGAATGTTTCCCATTTTTAGGATTGACATAGTTAAATAAATCCTTCAT 54762 || || || || || | || || || || || ||||||| | | || ||| Sbjct 1882821 GGAGATCATGGGTGACGGCCGGCCGTTCTTGGGGTTCACATAGTGGTAGAGGTCGCTCAC 1882880 Query 54763 CACTTCACTAAATAGtttttttGTTTCTTTGTGTAGATTTGATACGGCTATTCTAGCGGC 54822 || | || | || || || | ||||| || ||||| ||||| || | ||||| Sbjct 1882881 AACAGCCGACCATTGCTTCTTGGTCTGCTTGTGAAGGTTTGAGACGGCAATACGGGCGGC 1882940 Query 54823 TAGAATGGCATAATCCGGATGT 54844 ||||||||||| || |||||| Sbjct 1882941 AAGAATGGCATAGTCGGGATGT 1882962 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 593716315877760