Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Fusarium_20udum_20[genbank_20GCA_5F002194535.1_202017-06-15] 712 sequences; 56,380,608 total letters Query= NC_001973.1 Length=161046 Score E Sequences producing significant alignments: (Bits) Value seq667 268 1e-66 seq556 129 6e-25 seq223 123 3e-23 >seq667 Length=3682606 Score = 268 bits (296), Expect = 1e-66 Identities = 549/808 (68%), Gaps = 15/808 (2%) Strand=Plus/Minus Query 116636 ATGTGGCGCATGTACAAAAAGGCCGAGGCGTCGTTCTGGACCGTCGAGGAGGTGGACCTG 116695 || |||| |||||||| ||||| ||||| || |||||||| | |||||| | || || Sbjct 2045847 ATTTGGCAAATGTACAAGAAGGCTGAGGCTTCCTTCTGGACTGCTGAGGAGATTGATCTC 2045788 Query 116696 TCCAAGGA-CACGAGCGACTGGGAG---CGCTTGAACGACAACGAGCGCCATTTCATCAA 116751 ||||| || | | | ||||||| | ||| ||| | | |||| ||| || Sbjct 2045787 TCCAAAGATCTCCA-CGACTGGAACAACCGCCTGACTGCTGATGAGCAGTTCTTCGTCTC 2045729 Query 116752 GCACGTGCTGGCCTTTTTCGCCGCCAGCGACGGCATCGTCAACGAGAATCTGGTCGAGCG 116811 ||| | || || || ||||| ||| || || || ||||||||||| || |||||||| Sbjct 2045728 TCACATCCTTGCTTTCTTCGCTGCCTCTGATGGTATTGTCAACGAGAACCTCGTCGAGCG 2045669 Query 116812 TTTCGCTCAGGAGGTGCAGGTGGCCGAGGCGCGGTGCTTCTACGGCTTTCAGATCGCCAT 116871 |||| | ||||| ||| | ||||||| || |||||||||||||| |||||| || Sbjct 2045668 TTTCAGTGGCGAGGTCCAGATCCCCGAGGCTCGTTGCTTCTACGGCTTCCAGATCATGAT 2045609 Query 116872 GGAGAACGTGCACTCGGAAATGTATTCGACCCTCATCGACACGTACGT----GCGCTCTT 116927 ||||||| | ||||| || | || || ||| |||||||| ||| | | || | Sbjct 2045608 GGAGAACATTCACTCCGAGACCTACTCCCTCCTAATCGACACCTACATCAAGGAGCCCGC 2045549 Query 116928 CGGAGGAGAAGCTCCGTTTGTTGAACGCCATCGAGACGATGCCGTGCGTCAAAGAGAAGG 116987 | | ||| || | | | | |||||||| ||||| || || ||| || | |||||| Sbjct 2045548 CCA--GCGAACCTACCTCT--TCAACGCCATTGAGACCATTCCCTGCATCCGAAAGAAGG 2045493 Query 116988 CCGAGTGGGCGCTGCGCTGGATCGCCGGCAGAGAGGCCGCCTTCGGCGAGCGCCTGGTGG 117047 | || ||||| | || |||||| | | || || |||| | | | || || || | Sbjct 2045492 CTGACTGGGCCATCCGATGGATCCAAGATAAGGACTCCTCCTTTGCCCAACGTCTCGTTG 2045433 Query 117048 CCTTCGCGGCCGTCGAGGGCGTCTTCTTTTCGGGCAGTTTCGCCGCCATATTTTGGCTCA 117107 ||||||| || || || || ||||||| || |||||| | || || ||||||| Sbjct 2045432 CCTTCGCTGCTGTTGAAGGTATCTTCTTCAGCGGTGCCTTCGCCTCTATCTTCTGGCTCA 2045373 Query 117108 AGAAACGCGGCCTCATGCCCGGCCTGACTTTCAGCAACGAGCTCATCTCCAGGGACGAGG 117167 |||| || || ||||||||||| ||||| ||| ||||||||||||||| | ||||||| Sbjct 2045372 AGAAGCGTGGTCTCATGCCCGGTCTGACCTTCTCCAACGAGCTCATCTCTCGTGACGAGG 2045313 Query 117168 GTCTGCATTGCGACTTTGCCTGTTTGCTGTTCAAGCATTTGGTGCAGCGACCGAGCGCGG 117227 |||| || ||||||||||| | || | || | | || | ||| | Sbjct 2045312 GTCTTCACACTGACTTTGCCTGCCTCCTCCACTCTCACCTCAAGGGTCGTGCCAGCAAGC 2045253 Query 117228 CGCGCGTCAGGGAGATCGTCACCGACGCGGTCGCCATCGAGCAGCGCTTCCTCACCGAAG 117287 | || ||| ||| |||| ||||| ||| |||| |||||| |||||||| || | Sbjct 2045252 AGATGATCCAGGATATCATCACTGACGCCGTCACCATTGAGCAGGAGTTCCTCACTGAGG 2045193 Query 117288 CGC-TGCCGGTGCGTCTGCTGGGACTCAATTGCGAAACGATGTCGCAATACATCGAGTTC 117346 | | | || |||| || || || | || | || ||| ||| ||||| |||||| Sbjct 2045192 CTCTTCCCTGTGC-CCTCCTCGGCATGAACTCTGACCTCATGAAGCAGTACATTGAGTTC 2045134 Query 117347 GTCGCCGACAGGCTGCTGCTCGAGCTGGTCGGCGCCAAGCACTACAACACGCCCAACCCG 117406 ||||| || | || || ||| || | | || ||| |||||| | ||||||| Sbjct 2045133 GTCGCTGATCGTCTCCTTGTCGCTCTTGGCAACGAGAAGGTCTACAAGGCCACCAACCCC 2045074 Query 117407 CTGGACTTTATGAACCTCATCTCCTTGG 117434 | ||||| ||| | ||||||| ||| Sbjct 2045073 TTCGACTTCATGGAGAACATCTCCCTGG 2045046 Score = 147 bits (162), Expect = 2e-30 Identities = 162/213 (76%), Gaps = 2/213 (1%) Strand=Plus/Minus Query 40687 AAAATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAAGCC 40746 || ||||| || ||||| || || |||||||| || || |||||| | || || || | Sbjct 3145310 AAGATGCAGATTTTCGTCAAGACCCTCACGGGGAAGACGATCACCCTTGAGGTGGAGTCT 3145251 Query 40747 ACCGACAGCGTGCA-AACGCTCAAGGAAAAAATTCTCGACAAAGAGGGCATCCCCGCGGA 40805 |||||| | | | |||| ||||| || || | ||||| |||||||||||| | || Sbjct 3145250 TCCGACACCATCGACAACG-TCAAGTCCAAGATCCAGGACAAGGAGGGCATCCCCCCCGA 3145192 Query 40806 CCAGCAACGACTCATCTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTA 40865 |||||| || ||||||| || ||||| ||||| || || | |||||||| | |||||| Sbjct 3145191 CCAGCAGCGCCTCATCTTTGCTGGCAAGCAGCTCGAGGATGGCCGCACCCTGAGCGACTA 3145132 Query 40866 CAACATCCAGAAGGAGGCCACGCTGCATCTAGT 40898 |||||||||||||||| |||| || || || || Sbjct 3145131 CAACATCCAGAAGGAGTCCACCCTCCACCTGGT 3145099 >seq556 Length=5145791 Score = 129 bits (142), Expect = 6e-25 Identities = 156/210 (74%), Gaps = 2/210 (1%) Strand=Plus/Minus Query 40690 ATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAAGCCACC 40749 ||||| || || || || || || || ||||| ||||||||| |||| || || | || Sbjct 1549056 ATGCAGATCTTTGTCAAGACCCTGACCGGCAAGACCATCACCCTCGAGGTTGAGTCTTCC 1548997 Query 40750 GACAGCGTGCA-AACGCTCAAGGAAAAAATTCTCGACAAAGAGGGCATCCCCGCGGACCA 40808 |||| | | |||| ||||| || |||| || || ||||| ||||| | ||||| Sbjct 1548996 GACACTATCGACAACG-TCAAGTCCAAGATTCAGGATAAGGAGGGTATCCCTCCTGACCA 1548938 Query 40809 GCAACGACTCATCTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAA 40868 |||||| | |||| ||| ||||| ||||| || |||| ||||| ||| || ||||| Sbjct 1548937 GCAACGCTTGATCTTCGCCGGCAAGCAGCTTGAGGACGGCCGCACTCTCTCTGATTACAA 1548878 Query 40869 CATCCAGAAGGAGGCCACGCTGCATCTAGT 40898 ||| ||||||||| |||| |||||||| || Sbjct 1548877 CATTCAGAAGGAGTCCACTCTGCATCTCGT 1548848 Score = 105 bits (116), Expect = 7e-18 Identities = 151/210 (72%), Gaps = 2/210 (1%) Strand=Plus/Minus Query 40690 ATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAAGCCACC 40749 ||||| || || || || || || || || || ||||||||| | || ||||| ||| Sbjct 1548318 ATGCAGATTTTTGTGAAGACTCTTACTGGAAAGACCATCACCCTTGAGGTCGAGTCCAGT 1548259 Query 40750 GACAGCGTGCA-AACGCTCAAGGAAAAAATTCTCGACAAAGAGGGCATCCCCGCGGACCA 40808 |||| | | |||| | ||| || |||| ||||| ||||| || ||| | || || Sbjct 1548258 GACACTATCGACAACG-TGAAGAGCAAGATTCAGGACAAGGAGGGTATTCCCCCTGATCA 1548200 Query 40809 GCAACGACTCATCTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAA 40868 ||| || || |||| ||| || || ||| | || || | |||||| | | ||||||||| Sbjct 1548199 GCAGCGTCTTATCTTCGCTGGTAAGCAGTTAGAAGATGGTCGCACCTTGAGCGACTACAA 1548140 Query 40869 CATCCAGAAGGAGGCCACGCTGCATCTAGT 40898 ||||||||||||| | || || || || || Sbjct 1548139 CATCCAGAAGGAGTCAACCCTCCACCTCGT 1548110 Score = 102 bits (112), Expect = 8e-17 Identities = 149/211 (71%), Gaps = 0/211 (0%) Strand=Plus/Minus Query 40688 AAATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAAGCCA 40747 |||| | ||| |||| || || ||||| ||||| || |||||| | || ||||| | Sbjct 1548776 AAATCCTTATAGTCGTCAAGACCCTCACTGGCAAGACAATCACCCTTGAGGTCGAGTCAT 1548717 Query 40748 CCGACAGCGTGCAAACGCTCAAGGAAAAAATTCTCGACAAAGAGGGCATCCCCGCGGACC 40807 |||| | | | | | | ||| || || | ||||| ||||| ||||| | |||| Sbjct 1548716 CCGATACCATCGACAATGTTAAGTCGAAGATCCAGGACAAGGAGGGTATCCCTCCTGACC 1548657 Query 40808 AGCAACGACTCATCTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACA 40867 |||| || || |||| || || || || || || |||| || ||||| |||||||| Sbjct 1548656 AGCAGCGCCTGATCTTTGCTGGAAAGCAACTCGAAGACGGCCGAACCCTTGCCGACTACA 1548597 Query 40868 ACATCCAGAAGGAGGCCACGCTGCATCTAGT 40898 |||| |||||||| |||| || ||||| || Sbjct 1548596 ACATTCAGAAGGAATCCACCCTTCATCTCGT 1548566 Score = 84.2 bits (92), Expect = 2e-11 Identities = 133/191 (70%), Gaps = 0/191 (0%) Strand=Plus/Minus Query 40690 ATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAAGCCACC 40749 |||||||| ||||| || || || || || || || ||||| | || ||||| | || Sbjct 1548546 ATGCAAATCTTCGTCAAGACCCTTACTGGAAAGACTATCACTTTGGAAGTCGAGTCATCC 1548487 Query 40750 GACAGCGTGCAAACGCTCAAGGAAAAAATTCTCGACAAAGAGGGCATCCCCGCGGACCAG 40809 || | | | | | | ||| || || | ||||| ||||| || || | || || Sbjct 1548486 GATACCATTGATAATGTGAAGAGCAAGATCCAAGACAAGGAGGGTATTCCTCCCGATCAA 1548427 Query 40810 CAACGACTCATCTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAAC 40869 || |||||||||| ||| ||||| || || || || | || || || ||||||||| Sbjct 1548426 CAGCGACTCATCTTCGCTGGCAAGCAACTAGAGGATGGTCGAACTCTTTCAGACTACAAC 1548367 Query 40870 ATCCAGAAGGA 40880 ||||||||||| Sbjct 1548366 ATCCAGAAGGA 1548356 >seq223 Length=6419709 Score = 123 bits (136), Expect = 3e-23 Identities = 136/181 (75%), Gaps = 0/181 (0%) Strand=Plus/Minus Query 40699 TTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAAGCCACCGACAGCGTG 40758 ||||| || || || |||||||| ||||||||| |||| ||||| || | |||| | | Sbjct 4545545 TTCGTGAAGACCCTGACGGGCAAGACCATCACCCTCGAGGTCGAGTCCTCGGACACCATC 4545486 Query 40759 CAAACGCTCAAGGAAAAAATTCTCGACAAAGAGGGCATCCCCGCGGACCAGCAACGACTC 40818 | | ||||| || || | ||||| |||||||||||| | ||||| || ||||| Sbjct 4545485 GACAATGTCAAGTCCAAGATCCAGGACAAGGAGGGCATCCCCCCTGACCAACAGCGACTG 4545426 Query 40819 ATCTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAACATCCAGAAG 40878 |||| ||| || || ||||| || || | || || ||| ||||||||||||||||||| Sbjct 4545425 ATCTTCGCTGGTAAGCAGCTCGAGGATGGCCGAACTCTCTCCGACTACAACATCCAGAAG 4545366 Query 40879 G 40879 | Sbjct 4545365 G 4545365 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 515214614549120