Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Fusarium_20udum_20[genbank_20GCA_5F002194535.1_202017-06-15] 712 sequences; 56,380,608 total letters Query= NC_003102.1 Length=139342 Score E Sequences producing significant alignments: (Bits) Value seq223 253 2e-62 seq667 158 1e-33 seq556 93.3 4e-14 >seq223 Length=6419709 Score = 253 bits (280), Expect = 2e-62 Identities = 635/963 (66%), Gaps = 14/963 (1%) Strand=Plus/Plus Query 23027 GAGGCAAGATTGCATACGGCCACCTCGTCTTTGGACGTGTACTCTACAATTTCGGTACAT 23086 ||||| || ||||| || || |||||||| || |||||| | |||||| || || Sbjct 1881823 GAGGCGAGGTTGCAGACAGCGACCTCGTCAGGGGCACAGTACTCGATAATTTCAGTGCAA 1881882 Query 23087 AGATTGCTACACTTTATCGTGCCCAAATTGCTCTGGTTGCTTTTTCGATTGCACGAATCC 23146 || ||| | || || || | || | |||||||| || || ||||| | |||| Sbjct 1881883 AGGTTGGAGCTTCGGATGGTACCGAGGTTCTTTTGGTTGCTCTTGCGGTTGCAGGCATCC 1881942 Query 23147 TTGTAGAGCATGTACGGCGTGCCCGTCTCGACCTGCGACTCGATGATCGCTCGCCACATA 23206 |||||||||||| | || | || ||||| ||| | ||| | || || ||||| Sbjct 1881943 TTGTAGAGCATGAATGGGTTTCCGGTCTCAGTCTGGGCCTCAAGAATGGCGTACCACAGC 1882002 Query 23207 GTCTGAGCGTGAACA--CGT-CG-CACGTACCTGCCTTCTTCCTCGTACTTTTGGTACAA 23262 ||||||| | | | | || | | |||| ||||||| ||||||||| ||||| Sbjct 1882003 TTCTGAGCCTTGATGGTCTTGCGACCCTTACCCGCCTTCT----CGTACTTTTCGTACAG 1882058 Query 23263 CGCGTCAAATTCGGCACCGTAACAGTCGGCCAGGCCGGGCGATTGCATCGGACACATGAG 23322 || ||||| || | ||||| |||||||| ||||| || | | | || ||||| || Sbjct 1882059 AGCCTCAAACTCCTCTCCGTAGCAGTCGGCGAGGCCAGGGCACTCGTTAGGGCACATCAG 1882118 Query 23323 ACTCCACATTGAGTCATTTTCAACGCGTCTCATAAAAAGATCCGGTATCCATAGAGCGTA 23382 |||| || ||||||||||| |||| |||||||| || ||||| || || Sbjct 1882119 TGTCCAGTCACCGTTCTTTTCAACGCGCTTCATGAAAAGATCGGGGATCCAAAGGGCAAG 1882178 Query 23383 GAACAGTTCGCGGGCGCGCACCTCCTCTTTGCCGGTGTTCTTTTTCAAATCCAAAAAGTC 23442 ||| || || ||||| || |||||||| || ||| |||||| | ||| | || || Sbjct 1882179 GAAAAGGTCACGGGCACGAACCTCCTCCTTACCGTGGTTCTTACGGAGATCAAGGAATTC 1882238 Query 23443 CAACACGTCCGCATGCCACGGCTCGAGGTAAACGGCAAACGCGCCCGGTCTCTTATTGCC 23502 || || || | ||||| ||||||||||| | |||||| || || |||| ||| ||||| Sbjct 1882239 GAAGACATCGGAGTGCCAAGGCTCGAGGTAGATGGCAAAAGCACCGGGTCGCTTGTTGCC 1882298 Query 23503 GCCCTG------ATCGACGTAACGGGCCGTGTTGTTGTACACTCTTAGCATCGGCACGAG 23556 ||||| | || || || ||||||||| |||| | ||||| || || | Sbjct 1882299 ACCCTGGNNNNNNNNNNCATACCGAGCAGTGTTGTTGAACACACGAAGCATAGGAACAAC 1882358 Query 23557 ACCGTTGGACGCGCCGCCTACGCCCGCCACACTCGAACCTTTTGCTCGAACGTTGTGAAC 23616 |||||| || | ||| || || | || || | || || | ||| || Sbjct 1882359 ACCGTTCGATGTACCGTTGGTACCGGCGATGTATGAGCCAGTAGCACGGATACGGTGCAC 1882418 Query 23617 GTGGAAACCTATGCCTCCGCCCGATTTCGATATCATCGCGCATTGTTTCAGAGTGTCGTA 23676 | | ||| || || || || || || ||||| || || || ||||| ||||| Sbjct 1882419 ATTCAGACCAATACCACCAGCCATCTTGGAGATCATGGCACAGGTCTTGAGAGTATCGTA 1882478 Query 23677 GATGCCCTCGATGCTGTCCTCTTTGGTCGCGACCAAGAAACACGAAGACATTTGCGCTTT 23736 ||| ||||| || ||||| || || | | |||||||| || || |||| ||| | | Sbjct 1882479 GATTCCCTCAATACTGTCATCCTTCATATCAACCAAGAAGCAAGATGACAATTGGGGCTG 1882538 Query 23737 GGGCGTAGCGGCCGAGAACAGTGTCGGGCTGGCGTGCGTAAAGTATCCATTCGACATTAG 23796 || || |||| ||| || || ||| || ||||| ||| | | ||||| || Sbjct 1882539 AGGGGTGCCGGCGTTGAAGAGCGTGGGGGAAGCATGCGTGAAGAACTTGCTGGACATCAG 1882598 Query 23797 ATTGTACGTGTCGATGGCGGCATCAATGTCCTCTCCGTGTATACCGATGGCGACGCGCAT 23856 |||||| || || | | | || || || || || ||||| | | || ||||| Sbjct 1882599 ATTGTATGTCTCCAAGACTCGCTCGATATCATCACCCCAGATACCAACAGACACACGCAT 1882658 Query 23857 CATCATGTATTGAGGTCTCTCGACCGTGACGCCGTTAATTTTGAACAGATATGAACGTTG 23916 ||||||| ||||| | |||||| | |||| ||| |||| || ||||| || | Sbjct 1882659 GATCATGTGCTGAGGGCGCTCGACAATCTTACCGTCAATCTTGAGGAGGTATGATCGCTC 1882718 Query 23917 CATCGTTTTAAATCCAAAATAGTCATAGTTAAAGTCACGATCGTGCACTATGGCCGAATT 23976 || || || || ||||| || | || | || || || || | || ||||| || | Sbjct 1882719 CAAAGTCTTGAAGCCAAAGTATTGGTATTGGAAATCGCGGTCATAAACAATGGCAGAGTC 1882778 Query 23977 CAA 23979 ||| Sbjct 1882779 CAA 1882781 >seq667 Length=3682606 Score = 158 bits (174), Expect = 1e-33 Identities = 549/840 (65%), Gaps = 29/840 (3%) Strand=Plus/Minus Query 57570 ATTTGGAACATGTACAAAAAGGCAGAAGCATCGTTTTGGACCGTCGAAGAAGTAGACCTG 57629 |||||| | |||||||| ||||| || || || || ||||| | || || | || || Sbjct 2045847 ATTTGGCAAATGTACAAGAAGGCTGAGGCTTCCTTCTGGACTGCTGAGGAGATTGATCTC 2045788 Query 57630 TCTAAGGATCTGAGCGATTGGGATTCCCTCAAAGAAT-CTGA-GAGAAATTTTA--TTAA 57685 || || ||||| ||| ||| | || | || | |||| ||| | || | | Sbjct 2045787 TCCAAAGATCTCCACGACTGGAACAACCGCCT-GACTGCTGATGAGCAGTTCTTCGTCTC 2045729 Query 57686 ACACGTGTTGGCGTTTTTCGCCGCATCCGATGGTATTGTTAACGAGAATTTGGTCGAAAG 57745 ||| | | || || ||||| || || ||||||||||| |||||||| | ||||| | Sbjct 2045728 TCACATCCTTGCTTTCTTCGCTGCCTCTGATGGTATTGTCAACGAGAACCTCGTCGAGCG 2045669 Query 57746 ATTTTCACAAG--AAGTGCAAGTGACGGAGGCGAGATGCTTTTACGGATTTCAAGTGGCC 57803 ||||| | | || || | | ||||| | ||||| ||||| || || | Sbjct 2045668 --TTTCAGTGGCGAGGTCCAGATCCCCGAGGCTCGTTGCTTCTACGGCTTCCAGATCATG 2045611 Query 57804 ATTGAAAACGTGCATTCAGAAATGTATTCGCTACTCATCGATACGTACGTGAAGGACAAC 57863 || || ||| | || || || | || || || || ||||| || ||| | ||||| | Sbjct 2045610 ATGGAGAACATTCACTCCGAGACCTACTCCCTCCTAATCGACACCTACATCAAGGAGCCC 2045551 Query 57864 GACGAGA-AACGTAGACTGTTCAACGCGATCGAAACAATGCCCGCGATCGCCAAGAAGGC 57922 | | || ||| || || |||||||| || || || || ||| ||| |||||||| Sbjct 2045550 GCCCAGCGAACCTAC-CTCTTCAACGCCATTGAGACCATTCCCTGCATCCGAAAGAAGGC 2045492 Query 57923 AGAGTGGTCAATCAAATGGATAAAAAGCGCCACGG---CCACGTTCGCCGAGAGGCTAAT 57979 || ||| | ||| |||||| || | | || || | || ||| | | || | Sbjct 2045491 TGACTGGGCCATCCGATGGATCCAA---GATAAGGACTCCTCCTTTGCCCAACGTCTCGT 2045435 Query 57980 CGCGTTCGCCGCCGTCGAAGGTATATTCTTTTCGGGCAGCTTTGCGGCAATATTTTGGAT 58039 || ||||| || || |||||||| ||||| || ||| || | || || ||| | Sbjct 2045434 TGCCTTCGCTGCTGTTGAAGGTATCTTCTTCAGCGGTGCCTTCGCCTCTATCTTCTGGCT 2045375 Query 58040 GAAGAAACGCGGCCTGATGCCCGGCCTGACGTTTAGCAACGAGTTGATATCGCGCGACGA 58099 ||||| || || || |||||||| ||||| || ||||||| | || || || ||||| Sbjct 2045374 CAAGAAGCGTGGTCTCATGCCCGGTCTGACCTTCTCCAACGAGCTCATCTCTCGTGACGA 2045315 Query 58100 GGGTCTCCATACTGATTTTGCGTGCCTAATGTACTCTCAC----ATTGTCAATAAACCGA 58155 |||||| || ||||| ||||| ||||| | |||||||| | ||| | | | Sbjct 2045314 GGGTCTTCACACTGACTTTGCCTGCCTCCTCCACTCTCACCTCAAGGGTCGTGCCAGC-A 2045256 Query 58156 CGCGGGATCGCATCTTGGACATTATCACCGAGGCGGTCGCGATCGAAAATGAGTTTGTCA 58215 || ||| ||| ||| || ||||| || || ||| | || || | ||||| ||| Sbjct 2045255 AGC-AGAT--GATCCAGGATATCATCACTGACGCCGTCACCATTGAGCAGGAGTTCCTCA 2045199 Query 58216 CCGAAGCCCTACCGGTGGCCATGCTCGGTATGAACAATGATTTGATGTCAAAGTACATTG 58275 | || || || || ||| | ||||| |||||| ||| | ||| ||||||||| Sbjct 2045198 CTGAGGCTCTTCCCTGTGCCCTCCTCGGCATGAACTCTGACCTCATGAAGCAGTACATTG 2045139 Query 58276 AGTTTGTTGCCGACAGACTTTTGCTCGAACT--GATTGGAGAGCGTCATTACAACACGAA 58333 |||| || || || | || | ||| || | |||| ||| ||||| | | Sbjct 2045138 AGTTCGTCGCTGATCGTCTCCTTGTCGCTCTTGGCAACGAGAAGGTC--TACAAGGCCAC 2045081 Query 58334 AAATCCGTTTGATTTTATGAATCTGATCTCGCTCGAGGGCAAGACAAACTTTTTCGAAAA 58393 || || || || || ||| | ||||| || | |||||||| ||||| ||||| || Sbjct 2045080 CAACCCCTTCGACTTCATGGAGAACATCTCCCTGGGCGGCAAGACCAACTTCTTCGAGAA 2045021 Score = 109 bits (120), Expect = 5e-19 Identities = 153/215 (71%), Gaps = 0/215 (0%) Strand=Plus/Minus Query 31190 AACATGCAAATTTTCGTAAAGACTCTGACAGGCAAAACGATCACCGTCGACGTTGAACCG 31249 || ||||| |||||||| ||||| || || || || ||||||||| | || || || | Sbjct 3145310 AAGATGCAGATTTTCGTCAAGACCCTCACGGGGAAGACGATCACCCTTGAGGTGGAGTCT 3145251 Query 31250 TCCGACAGTGTCGAAACGGTCAAACAGAGAATAGCGGACAAGGAAGGCGTGCCGCCCGAC 31309 ||||||| |||| | ||||| | || ||||||||| ||| | || |||||| Sbjct 3145250 TCCGACACCATCGACAACGTCAAGTCCAAGATCCAGGACAAGGAGGGCATCCCCCCCGAC 3145191 Query 31310 CAGCAGCGTCTAATATTCGCTGGCAAACAGTTGGAAGACTCTATGACTATGAGCGATTAT 31369 |||||||| || || || |||||||| ||| | || || || ||||||| || Sbjct 3145190 CAGCAGCGCCTCATCTTTGCTGGCAAGCAGCTCGAGGATGGCCGCACCCTGAGCGACTAC 3145131 Query 31370 AACATTCAAAAAGAATCGACTCTTCATCTGGTACT 31404 ||||| || || || || || || || ||||| || Sbjct 3145130 AACATCCAGAAGGAGTCCACCCTCCACCTGGTCCT 3145096 >seq556 Length=5145791 Score = 93.3 bits (102), Expect = 4e-14 Identities = 154/221 (70%), Gaps = 6/221 (3%) Strand=Plus/Minus Query 31193 ATGCAAATTTTCGTAAAGACTCTGACAGGCAAAACGATCACCGTCGACGTTGAACCGTCC 31252 ||||| ||||| || |||||||| || || || || |||||| | || || || |||| Sbjct 1548318 ATGCAGATTTTTGTGAAGACTCTTACTGGAAAGACCATCACCCTTGAGGTCGA---GTCC 1548262 Query 31253 ---GACAGTGTCGAAACGGTCAAACAGAGAATAGCGGACAAGGAAGGCGTGCCGCCCGAC 31309 |||| | |||| | || || | || ||||||||| || | || || || Sbjct 1548261 AGTGACACTATCGACAACGTGAAGAGCAAGATTCAGGACAAGGAGGGTATTCCCCCTGAT 1548202 Query 31310 CAGCAGCGTCTAATATTCGCTGGCAAACAGTTGGAAGACTCTATGACTATGAGCGATTAT 31369 ||||||||||| || |||||||| || ||||| ||||| | || ||||||| || Sbjct 1548201 CAGCAGCGTCTTATCTTCGCTGGTAAGCAGTTAGAAGATGGTCGCACCTTGAGCGACTAC 1548142 Query 31370 AACATTCAAAAAGAATCGACTCTTCATCTGGTACTTAGACT 31410 ||||| || || || || || || || || || || |||| Sbjct 1548141 AACATCCAGAAGGAGTCAACCCTCCACCTCGTTCTCCGACT 1548101 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 445762432679040