Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Fusarium_20udum_20[genbank_20GCA_5F002194535.1_202017-06-15] 712 sequences; 56,380,608 total letters Query= NC_003310.1 Length=196858 Score E Sequences producing significant alignments: (Bits) Value seq223 147 3e-30 seq667 122 1e-22 >seq223 Length=6419709 Score = 147 bits (162), Expect = 3e-30 Identities = 562/874 (64%), Gaps = 18/874 (2%) Strand=Plus/Plus Query 63221 AGGACATTCATCCGGACACATCAACGACCACTCTCCGTCATCCTTCACTCGTTTCATAAA 63280 ||| || || | || ||||||| | ||| || |||| | | || || ||||| || Sbjct 1882095 AGGGCACTCGTTAGGGCACATCAGTGTCCAGTCACCGTTCTTTTCAACGCGCTTCATGAA 1882154 Query 63281 GAGATCAGGAATCCAAAGAGCTATAAATAGATCTCTTGTTCTATGTTCCTCGTTTCCTGT 63340 ||||| || |||||||| || | || || || | | | | ||||| || || Sbjct 1882155 AAGATCGGGGATCCAAAGGGCAAGGAAAAGGTCACGGGCACGAACCTCCTCCTTACCGTG 1882214 Query 63341 ATTCTTTTTAAGATCGAGGAACGCCATAATATCAGAATGCCACGGTTCCAAGTATATGGC 63400 ||||| ||||| ||||| | | | ||| || ||||| || || | ||| ||||| Sbjct 1882215 GTTCTTACGGAGATCAAGGAATTCGAAGACATCGGAGTGCCAAGGCTCGAGGTAGATGGC 1882274 Query 63401 CATAACTCCAGGCCGTTTGTTTCCTCCCTGATCTATG------TATCTAGCGGTGTTATT 63454 | | | || || || ||||| || ||||| || | ||| ||||| || Sbjct 1882275 AAAAGCACCGGGTCGCTTGTTGCCACCCTGGNNNNNNNNNNCATACCGAGCAGTGTTGTT 1882334 Query 63455 ATAAACTCTCAACATTGGAATAATACCGTTTGATATACCATTGGTACCGGAGATATAGCC 63514 | || | | ||| |||| || |||||| ||| |||| |||||||||| ||| || Sbjct 1882335 GAACACACGAAGCATAGGAACAACACCGTTCGATGTACCGTTGGTACCGGCGATGTATGA 1882394 Query 63515 TCCACTGGCACGAATAT--TACTAATTGATAGACCTATTCCCCCTGCCATTTTAGAGATT 63572 ||| | ||||| ||| | | ||| | |||| || || || ||||| || ||||| Sbjct 1882395 GCCAGTAGCACGGATACGGTGCACATTCA--GACCAATACCACCAGCCATCTTGGAGATC 1882452 Query 63573 AATGCGCATCGTTTTAACGTGTCATAGATGCCTTCTATGCTATCATCGATCATGTTAAGT 63632 | || || || | || || ||||| || || || || ||||| |||| | || Sbjct 1882453 ATGGCACAGGTCTTGAGAGTATCGTAGATTCCCTCAATACTGTCATCCTTCATATCAACC 1882512 Query 63633 AGAAAACAGCTAGACATTTGGTGACGAGTAGTTCCCGCATTAAATAAGGTAGGAGAAGCG 63692 | || || |||| |||| | ||| || || || || || | || || ||||| Sbjct 1882513 AAGAAGCAAGATGACAATTGGGGCTGAGGGGTGCCGGCGTTGAAGAGCGTGGGGGAAGCA 1882572 Query 63693 TGCGTAAACCATTTTTCAGAAAGTAGATTGTACGTCTCAATAGCTGAGTCTATATCC-CA 63751 ||||| || | || || | |||||||| ||||| | || || ||||| || Sbjct 1882573 TGCGTGAAGAACTTGCTGGACATCAGATTGTATGTCTCCAAGACTCGCTCGATATCATCA 1882632 Query 63752 TTGATGAATTCCTACTGCGACACGCATTAACATGTGCTGAGGTCTTTCAACAATTTTGTT 63811 || | || || | |||||||| | |||||||||||| | || ||||| || Sbjct 1882633 CCCCAGA-TACCAACAGACACACGCATGATCATGTGCTGAGGGCGCTCGACAATCTTACC 1882691 Query 63812 GTTTATTTTCAACAAGTAGGATTTTTCCAAAGTTTTAAAACCAAAATAGTTGTATGAAAA 63871 || || || | | ||| ||| |||||||| || || ||||| || | |||| || Sbjct 1882692 GTCAATCTTGAGGAGGTATGATCGCTCCAAAGTCTTGAAGCCAAAGTATTGGTATTGGAA 1882751 Query 63872 GTCTCGTTCGTAAATAATAACCGAATTGAGCTTATCCTTATATTTGTTAACTATATCCAT 63931 || || || |||| ||| | || | | || ||||||| | | || | ||| Sbjct 1882752 ATCGCGGTCATAAACAATGGCAGAGTCCAACTCCTCCTTATGTCGCATGAC-GCACTCAT 1882810 Query 63932 GGTAATACTT-GAAATAATCGGAGAATGTTTCCCATTTTTAGGATTAACATAGTTGAATA 63990 | | ||| || || || || || | || || || || || ||||||| | | | Sbjct 1882811 AGGTCTCCTTGGAGATCATGGGTGACGGCCGGCCGTTCTTGGGGTTCACATAGTGGTAGA 1882870 Query 63991 AATC-CTC-CATCACTTCACTAAATAGtttttttGTTTCCTTGTGTAGATTTGATATGGC 64048 || ||| || || || || | || || || | |||||| || ||||| | ||| Sbjct 1882871 GGTCGCTCACAACAGCCGAC--CATTGCTTCTTGGTCTGCTTGTGAAGGTTTGAGACGGC 1882928 Query 64049 TATTCTGGCGGCTAGAATGGCATAATCCGGATGT 64082 || | |||||| ||||||||||| || |||||| Sbjct 1882929 AATACGGGCGGCAAGAATGGCATAGTCGGGATGT 1882962 >seq667 Length=3682606 Score = 122 bits (134), Expect = 1e-22 Identities = 361/552 (65%), Gaps = 10/552 (2%) Strand=Plus/Plus Query 33596 GTGCAGACCCTCGTCTCTACTAATTAATTCGTTAGAAAACGTGAGTCCGGGCATTAGGCC 33655 ||| ||||||||||| | | || | ||||| || || || || |||||||| || || Sbjct 2045305 GTGAAGACCCTCGTCACGAGAGATGAGCTCGTTGGAGAAGGTCAGACCGGGCATGAGACC 2045364 Query 33656 ACGCTTTTTAAGCCAAAATATGGAAGCGAATGATCCGGAAAAGAAGATTCCTTCTACTGC 33715 |||||| || ||||| || || || ||||| | ||| |||||||| ||||| || || Sbjct 2045365 ACGCTTCTTGAGCCAGAAGATAGAGGCGAAGGCACCGCTGAAGAAGATACCTTCAACAGC 2045424 Query 33716 AGCAAAGGCAATAAGTCTCTCTCCATAACCGG---CGCTGTCATGTATCCA-CTTTTGAG 33771 ||| ||||||| || | | || | || | | || || ||||| | || | Sbjct 2045425 AGCGAAGGCAACGAGACGTTGGGCAAAGGAGGAGTCCTTATCTTGGATCCATCGGATG-G 2045483 Query 33772 CCCAATCGGCCTTCTTTTTTACACAAGGCATCGTTTCTATGGCATTAAAGAGATAGtttt 33831 |||| || ||||||||| | || || || || || ||||| || ||||| ||| || Sbjct 2045484 CCCAGTCAGCCTTCTTTCGGATGCAGGGAATGGTCTCAATGGCGTTGAAGAGGTAGGTTC 2045543 Query 33832 tttCATTACTATCTTTAACATAAGTATCGATCAAAAGACTATACATTTCCGAATGAATGT 33891 | || || | || || ||||| | || || | || || ||||||| Sbjct 2045544 GCTGGGCGGGCTCCTTGATGTAGGTGTCGATTAGGAGGGAGTAGGTCTCGGAGTGAATGT 2045603 Query 33892 TTTCAATGGCCATCTGAAATCCGTAGAAACATCTAGCCTCGGTAATCTGCACTTCTGTAC 33951 | || || ||||| || |||||||| || | |||||||| ||||| || || || Sbjct 2045604 TCTCCATCATGATCTGGAAGCCGTAGAAGCAACGAGCCTCGGGGATCTGGACCTCGCCAC 2045663 Query 33952 AAAATCGTTCTGCTAAATTTTCATTCACTATTCCATCACTGGCTGCAAAAAACGCCAATA 34011 || || || | | || || || || || |||||| ||| || || || || | | Sbjct 2045664 TGAAACGCTCGACGAGGTTCTCGTTGACAATACCATCAGAGGCAGCGAAGAAAGCAAGGA 2045723 Query 34012 CATGTTTTATAAAATATTTTTCGTCTGGTGTTA---GTTTATTCCAATCATTGATATCTT 34068 || | || | | || || | || | | || ||||| || | || ||||| Sbjct 2045724 TGTGAGAGACGAAGAACTGCTCATCAGCAGTCAGGCGGTTGTTCCAGTCGTGGAGATCTT 2045783 Query 34069 TAGATATATCCACTTCTTCCACTGTCCAAAATGATGCCTCTGCCTTTTTATACATATTCC 34128 | || | ||| | || || | ||||| || || ||||| ||||| || ||||| | || Sbjct 2045784 TGGAGAGATCAATCTCCTCAGCAGTCCAGAAGGAAGCCTCAGCCTTCTTGTACATTTGCC 2045843 Query 34129 AGA--TGTCATG 34138 | | ||||||| Sbjct 2045844 AAATCTGTCATG 2045855 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 629811994623360