Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Fusarium_20udum_20[genbank_20GCA_5F002194535.1_202017-06-15] 712 sequences; 56,380,608 total letters Query= NC_003663.2 Length=224499 Score E Sequences producing significant alignments: (Bits) Value seq223 188 1e-42 seq667 107 3e-18 >seq223 Length=6419709 Score = 188 bits (208), Expect = 1e-42 Identities = 718/1109 (65%), Gaps = 34/1109 (3%) Strand=Plus/Plus Query 79666 ATTATTTCAGTGCAGAGGTTACTACACTTAATGGTTCCTAAATTTTGTTGATTACTCTTT 79725 || ||||||||||| ||||| | ||||| || | || | ||| || ||||| Sbjct 1881868 ATAATTTCAGTGCAAAGGTTGGAGCTTCGGATGGTACCGAGGTTCTTTTGGTTGCTCTTG 1881927 Query 79726 TTGTTACACGCATCCTTATAAAGAATGAACGGAGTACCAGTTTCAATCTGAGATTCTATA 79785 ||| || |||||||| || || ||||| || | || || ||| |||| | || | | Sbjct 1881928 CGGTTGCAGGCATCCTTGTAGAGCATGAATGGGTTTCCGGTCTCAGTCTGGGCCTCAAGA 1881987 Query 79786 ATCGCTTTCCAGACGACTC-GAGCCTTTATTATAGACTTGTATCTCTTTTCT--CTT-TC 79841 || || | ||| | | || ||||||| || | |||| | ||| | ||| || Sbjct 1881988 ATGGCGTACCACA-GCTTCTGAGCCTTGATGGT---CTTGCGACCCTTACCCGCCTTCTC 1882043 Query 79842 GTATTGT--GTATATAATCGTTCGAACTCGTCTCCCCAAACATCGTCTAATCCAGGACAT 79899 ||| | | ||| | | | || ||||| ||||| | ||| | | ||||| || Sbjct 1882044 GTACTTTTCGTACAGAGCC--TCAAACTCCTCTCCGTAGCAGTCGGCGAGGCCAGGGCAC 1882101 Query 79900 TCGTCAGGACACATCAACGACCACTCTCCATCATCCTTT--ACTCGTTTCATAAAGAGAT 79957 |||| ||| ||||||| | ||| || || | || ||| || || ||||| || |||| Sbjct 1882102 TCGTTAGGGCACATCAGTGTCCAGTCACCGT--TCTTTTCAACGCGCTTCATGAAAAGAT 1882159 Query 79958 CAGGAATCCAAAGAGCTATAAATAGATCTCTGGTTCTATGCTCCTCGTTTCCTGTATTCT 80017 | || |||||||| || | || || || | || | | |||||| || || |||| Sbjct 1882160 CGGGGATCCAAAGGGCAAGGAAAAGGTCACGGGCACGAACCTCCTCCTTACCGTGGTTCT 1882219 Query 80018 TTTTAAGATCGAGGAACGCCATAATATCAGAATGCCACGGTTCCAAGTATATGGCCATAA 80077 | ||||| ||||| | | | ||| || ||||| || || | ||| ||||| | | Sbjct 1882220 TACGGAGATCAAGGAATTCGAAGACATCGGAGTGCCAAGGCTCGAGGTAGATGGCAAAAG 1882279 Query 80078 CTCCCGGTCGTTTGTTTCCTCCCTGATCTATG------TATCTAGCGGTGTTATTATAAA 80131 | || ||||| ||||| || ||||| || | ||| ||||| || | | Sbjct 1882280 CACCGGGTCGCTTGTTGCCACCCTGGNNNNNNNNNNCATACCGAGCAGTGTTGTTGAACA 1882339 Query 80132 CTCTCAACATTGGAATAATACCATTGGATGTACCATTGGTCCCGGAGATATAGCTTCCAC 80191 | | | ||| |||| || ||| || |||||||| ||||| |||| ||| || ||| Sbjct 1882340 CACGAAGCATAGGAACAACACCGTTCGATGTACCGTTGGTACCGGCGATGTATGAGCCAG 1882399 Query 80192 TGGCACGAATAT--TACTAATTGATAGACCTATTCCCCCTGCCATTTTAGAGATTAATGC 80249 | ||||| ||| | | ||| | |||| || || || ||||| || ||||| | || Sbjct 1882400 TAGCACGGATACGGTGCACATTCA--GACCAATACCACCAGCCATCTTGGAGATCATGGC 1882457 Query 80250 GCATCGTTTTAACGTATCATAGATGCCCTCTATGCTATCATCAATCATGTTAAGTAGAAA 80309 || || | ||||| ||||| ||||| || || ||||| |||| | || | || Sbjct 1882458 ACAGGTCTTGAGAGTATCGTAGATTCCCTCAATACTGTCATCCTTCATATCAACCAAGAA 1882517 Query 80310 ACAGCTAGACATTTGGTGACGACTAGTTCCCGCATTAAATAAGGTAGGAGAAGCGTGCGT 80369 || |||| |||| | || || || || || || | || || ||||| ||||| Sbjct 1882518 GCAAGATGACAATTGGGGCTGAGGGGTGCCGGCGTTGAAGAGCGTGGGGGAAGCATGCGT 1882577 Query 80370 AAACCATTTTTCAGACAGTAGATTGTACGTCTCAATAGCTGATTCTATATCC-CATTGAT 80428 || | || |||| |||||||| ||||| | || || ||||| || Sbjct 1882578 GAAGAACTTGCTGGACATCAGATTGTATGTCTCCAAGACTCGCTCGATATCATCACCCCA 1882637 Query 80429 GAATTCCTACCGCGACACGCATTAACATGTGCTGAGGTCTTTCAACGATCTTGTTATTTA 80488 || | || || | |||||||| | |||||||||||| | || || ||||| | | Sbjct 1882638 GA-TACCAACAGACACACGCATGATCATGTGCTGAGGGCGCTCGACAATCTTACCGTCAA 1882696 Query 80489 TTTTCAACAAGTAAGATTTTTCCAAAGTTTTAAAACCAAAATAGTTGTATGAAAAGTCTC 80548 | || | | ||| ||| |||||||| || || ||||| || | |||| || || | Sbjct 1882697 TCTTGAGGAGGTATGATCGCTCCAAAGTCTTGAAGCCAAAGTATTGGTATTGGAAATCGC 1882756 Query 80549 GTTCGTAAATAATAACCGAGTTGAGTTTATCCTTATATTTGTTAACTACATCCATGGTGA 80608 | || |||| ||| | |||| | | ||||||| | | || || ||| | Sbjct 1882757 GGTCATAAACAATGGCAGAGTCCAACTCCTCCTTATGTCGCATGAC-GCACTCATAGGTC 1882815 Query 80609 TACTT-GAAATAATCGGAGAATGTTTCCCATTTTTAGGATTAACATAGTTGAATAAATC- 80666 | ||| || || || || || | || || || || || ||||||| | | | || Sbjct 1882816 TCCTTGGAGATCATGGGTGACGGCCGGCCGTTCTTGGGGTTCACATAGTGGTAGAGGTCG 1882875 Query 80667 CTC-CATCACTTCACTAAATAGtttttttGTTTCCTTGTGTAGATTTGATACGGCTATTC 80725 ||| || || || || | || || || | |||||| || ||||| ||||| || | Sbjct 1882876 CTCACAACAGCCGAC--CATTGCTTCTTGGTCTGCTTGTGAAGGTTTGAGACGGCAATAC 1882933 Query 80726 TGGCGGCTAAAATGGCATAATCTGGATGT 80754 |||||| | ||||||||| || |||||| Sbjct 1882934 GGGCGGCAAGAATGGCATAGTCGGGATGT 1882962 >seq667 Length=3682606 Score = 107 bits (118), Expect = 3e-18 Identities = 358/552 (65%), Gaps = 10/552 (2%) Strand=Plus/Plus Query 49974 GTGCAGACCCTCGTCTCTACTAATTAGTTCGTTGGAAAACGTGAGTCCGGGCATTAGGCC 50033 ||| ||||||||||| | | || || |||||||| || || || |||||||| || || Sbjct 2045305 GTGAAGACCCTCGTCACGAGAGATGAGCTCGTTGGAGAAGGTCAGACCGGGCATGAGACC 2045364 Query 50034 ACGCTTTTTAAGCCAAAATATGGACGCAAATGACCCAGAAAAGAAGATTCCTTCTACTGC 50093 |||||| || ||||| || || || || || | || |||||||| ||||| || || Sbjct 2045365 ACGCTTCTTGAGCCAGAAGATAGAGGCGAAGGCACCGCTGAAGAAGATACCTTCAACAGC 2045424 Query 50094 GGCAAAGGCAACAAGTCTCTCTCCATAACTGG---CGCTGTCATGTATCCA-CTTTTGAG 50149 || |||||||| || | | || | || | | || || ||||| | || | Sbjct 2045425 AGCGAAGGCAACGAGACGTTGGGCAAAGGAGGAGTCCTTATCTTGGATCCATCGGATG-G 2045483 Query 50150 CCCAATCGGCCTTCTTTTTTACACAAGGCATCGTTTCTATGGCATTAAAGAGATAGtttt 50209 |||| || ||||||||| | || || || || || ||||| || ||||| ||| || Sbjct 2045484 CCCAGTCAGCCTTCTTTCGGATGCAGGGAATGGTCTCAATGGCGTTGAAGAGGTAGGTTC 2045543 Query 50210 tttCATTACTATCTTTAACATAAGTATCGATCAAAAGACTATACATTTCCGAATGAATGT 50269 | || || | || || ||||| | || || | || || ||||||| Sbjct 2045544 GCTGGGCGGGCTCCTTGATGTAGGTGTCGATTAGGAGGGAGTAGGTCTCGGAGTGAATGT 2045603 Query 50270 TTTCAATGGCCATCTGAAATCCGTAGAAACATCTAGCCTCGGTAATCTGCACTTCTGTAC 50329 | || || ||||| || |||||||| || | |||||||| ||||| || || || Sbjct 2045604 TCTCCATCATGATCTGGAAGCCGTAGAAGCAACGAGCCTCGGGGATCTGGACCTCGCCAC 2045663 Query 50330 AAAATCGTTCAGCTAAATTTTCATTCACTATTCCGTCACTGGCTGCAAAAAACGCCAATA 50389 || || || | | || || || || || || ||| ||| || || || || | | Sbjct 2045664 TGAAACGCTCGACGAGGTTCTCGTTGACAATACCATCAGAGGCAGCGAAGAAAGCAAGGA 2045723 Query 50390 CATGTTTTATAAAATGTTTTTCGTTGGGTGTTA---GTTTATTCCAATCATTGATATCTT 50446 || | || | || | | || | | || ||||| || | || ||||| Sbjct 2045724 TGTGAGAGACGAAGAACTGCTCATCAGCAGTCAGGCGGTTGTTCCAGTCGTGGAGATCTT 2045783 Query 50447 TAGATATATCTACTTCTTCCACTGTCCAAAATGATGCCTCTGCCTTTTTATACATATTCC 50506 | || | ||| | || || | ||||| || || ||||| ||||| || ||||| | || Sbjct 2045784 TGGAGAGATCAATCTCCTCAGCAGTCCAGAAGGAAGCCTCAGCCTTCTTGTACATTTGCC 2045843 Query 50507 AGA--TGTCATG 50516 | | ||||||| Sbjct 2045844 AAATCTGTCATG 2045855 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 718262407407680