Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Fusarium_20udum_20[genbank_20GCA_5F002194535.1_202017-06-15] 712 sequences; 56,380,608 total letters Query= NC_004156.2 Length=231621 Score E Sequences producing significant alignments: (Bits) Value seq667 226 4e-54 seq223 147 3e-30 >seq667 Length=3682606 Score = 226 bits (250), Expect = 4e-54 Identities = 568/851 (67%), Gaps = 23/851 (3%) Strand=Plus/Minus Query 125013 CATGACA--TTTGGGAAATGTACAAAAAGGCTCAGGCCTCCTTTTGGACGGTCGAAGAGG 125070 ||||||| ||||| |||||||||| |||||| |||| ||||| ||||| | || ||| Sbjct 2045855 CATGACAGATTTGGCAAATGTACAAGAAGGCTGAGGCTTCCTTCTGGACTGCTGAGGAGA 2045796 Query 125071 TCGATCTGTCCAAGGACCTGTACGATTGGGAGACTCGTTTGACTGAAACTGAGCGAGAGT 125130 | ||||| ||||| || || |||| ||| | | || |||||| ||||| | Sbjct 2045795 TTGATCTCTCCAAAGATCTCCACGACTGGAACAACCGCCTGACTGCTGATGAGCAGTTCT 2045736 Query 125131 TTATATCGCACATTTTGGCCTTCTTTGCCGGCTCCGATGGAATCGTCAACGACAATCT-G 125189 | | || ||||| | || ||||| || | ||| ||||| || |||||||| || || | Sbjct 2045735 TCGTCTCTCACATCCTTGCTTTCTTCGCTGCCTCTGATGGTATTGTCAACGAGAACCTCG 2045676 Query 125190 TTGACACGATTCTCTCAAGAGTTGACCATTCCAGAGGTGTCGT-GCTTTTACGGATTCCA 125248 | || || ||| | ||| | || || |||| |||| |||| ||||| ||||| Sbjct 2045675 TCGAG-CGTTTCAGTGGCGAGGTCCAGATCCCCGAGGC-TCGTTGCTTCTACGGCTTCCA 2045618 Query 125249 AATCATGATTGAGAACGTGCACTCGGAAATGTACTCTACACTGATTGACATGTACATTCG 125308 |||||||| |||||| | ||||| || | ||||| || || |||| ||||| Sbjct 2045617 GATCATGATGGAGAACATTCACTCCGAGACCTACTCCCTCCTAATCGACACCTACATCAA 2045558 Query 125309 CGATCC-GCAACGTAAACACATGCTCTTTAACGCAATCGACACGGTGCCGTCTATACGTA 125367 || || || | ||| | ||||| ||||| || || || | || | || || | Sbjct 2045557 GGAGCCCGCCCAGCGAACCTAC-CTCTTCAACGCCATTGAGACCATTCCCTGCATCCGAA 2045499 Query 125368 AAAAGGCTCAATGGGTGATTCGGTGGATCGATGACGACAAGTCTTCGTACGCCGACAGAC 125427 | |||||| | |||| || || |||||| | || | | || || | ||| | | | Sbjct 2045498 AGAAGGCTGACTGGGCCATCCGATGGATCCAAGATAAGGACTCCTCCTTTGCCCAACGTC 2045439 Query 125428 TGGTGGCATTCGCCGCCGTAGAGGGCATCTTCTTTTCGGGTAGTTTTGCGGCCATCTTTT 125487 | || || ||||| || || || || |||||||| ||| || || | ||||| | Sbjct 2045438 TCGTTGCCTTCGCTGCTGTTGAAGGTATCTTCTTCAGCGGTGCCTTCGCCTCTATCTTCT 2045379 Query 125488 GGCTCAAGAAGCGCGGACTCATGCCCGGACTGACGCACAGTAACGAGTTTATATCTCGAG 125547 ||||||||||||| || ||||||||||| ||||| | |||||| | || ||||| | Sbjct 2045378 GGCTCAAGAAGCGTGGTCTCATGCCCGGTCTGACCTTCTCCAACGAGCTCATCTCTCGTG 2045319 Query 125548 ACGAGGGCCTACACTGTGACTTTGCCATTCTACTGTTTCGCAACTATCTGCGTCCCGAGT 125607 ||||||| || ||| |||||||||| || || | ||| | | | | || Sbjct 2045318 ACGAGGGTCTTCACACTGACTTTGCCTGCCTCCT------CCACTCT---CACCTCAAGG 2045268 Query 125608 GCAGATCCAGCGATGAAAAGGTCATCAACATTGTAACCGATGCCGTGAGGATAGAACAAG 125667 | | ||||| | | | | || | || | || || ||||| | || || || | Sbjct 2045267 GTCGTGCCAGCAAGCAGATGATCCAGGATATCATCACTGACGCCGTCACCATTGAGCAGG 2045208 Query 125668 AGTTTCTAACCGAATCCCTACCGGTCAGCATGATTGGCATGAACTGCAAGCTAATGTGCG 125727 |||| || || || | || || | | | |||||||||| | || ||| Sbjct 2045207 AGTTCCTCACTGAGGCTCTTCCCTGTGCCCTCCTCGGCATGAACTCTGACCTCATGAAGC 2045148 Query 125728 AGTACATAGAGTTTGTGGCAGATCGTCTACTGTACGAGTTGATTGGC--CG-CAAGATTT 125784 ||||||| ||||| || || |||||||| || || ||||| || ||| | | Sbjct 2045147 AGTACATTGAGTTCGTCGCTGATCGTCTCCTTGTCG---CTCTTGGCAACGAGAAGGTCT 2045091 Query 125785 ACAACGCCAAGAATCCCTTTGATTTCATGACCAGCATATCACTAGAGGGTAAGACCAACT 125844 |||| |||| || ||||| || |||||| | ||| || || | || |||||||||| Sbjct 2045090 ACAAGGCCACCAACCCCTTCGACTTCATGGAGAACATCTCCCTGGGCGGCAAGACCAACT 2045031 Query 125845 TTTTCGAGAAG 125855 | ||||||||| Sbjct 2045030 TCTTCGAGAAG 2045020 >seq223 Length=6419709 Score = 147 bits (162), Expect = 3e-30 Identities = 308/450 (68%), Gaps = 12/450 (3%) Strand=Plus/Minus Query 96876 CAGGGCGGCAATAAACGGCCAGGCGCTATAGCCGTCTACTTGGAACCTTGGCACGCGGAC 96935 ||||| ||||| || || || || ||| | ||| ||||| | || ||||||||| | || Sbjct 1882304 CAGGGTGGCAACAAGCGACCCGGTGCTTTTGCCATCTACCTCGAGCCTTGGCACTCCGAT 1882245 Query 96936 GTTTTTGACTTTATCGAGATGCGCAAAAACTCTGGCTTTGAAGAGGCACGAGCCAGGGAC 96995 || || || || | || | || || ||| || || |||| || ||| | ||| Sbjct 1882244 GTCTTCGAATTCCTTGATCTCCGTAAGAACCACGGTAAGGAGGAGGTTCGTGCCCGTGAC 1882185 Query 96996 TTGTTTTATGCACTCTGGGTGCCAGATTTGTTCATGAAGCGCGTC---AACGACGGTGGC 97052 | || ||| || ||| | || ||| | |||||||||||||| || |||||| Sbjct 1882184 CTTTTCCTTGCCCTTTGGATCCCCGATCTTTTCATGAAGCGCGTTGAAAAGAACGGTG-- 1882127 Query 97053 TACTGGAGCCTAATGTGCCCCGACTCGTCACCCGGTCTGTCCGATTGCTGGGGCGAAGAG 97112 |||||| || |||||||| || || || || || |||| |||| || || ||| Sbjct 1882126 -ACTGGACACTGATGTGCCCTAACGAGTGCCCTGGCCTCGCCGACTGCTACGGAGAGGAG 1882068 Query 97113 TTTGAGGCCAAGTACACGGCCTACGAGCAAGAGGG-CCGATACGTGAGACGAGTCGATGC 97171 |||||||| |||| |||||| | | ||| | || |||| | || | || Sbjct 1882067 TTTGAGGCTCTGTACGAAAAGTACGAGAAGGCGGGTAAGGGTCGCAAGACCA-TCAAGGC 1882009 Query 97172 ACGAGAA-CTGTGGAAGGCCA-TCGTGACGGCTCAGGTAGAGACTGGAACTCCGTACATT 97229 | |||| |||||| | |||| || ||| ||| ||| ||||| |||| || | ||| Sbjct 1882008 TC-AGAAGCTGTGGTACGCCATTCTTGA-GGCCCAGACTGAGACCGGAAACCCATTCATG 1881951 Query 97230 CTCTACAAGGATACCGTGAATCGCAACAGCAACCAACGCCACTTGGGCACCATCAAGGGC 97289 |||||||||||| || || ||||| ||||||||| || | || |||||| || Sbjct 1881950 CTCTACAAGGATGCCTGCAACCGCAAGAGCAACCAAAAGAACCTCGGTACCATCCGAAGC 1881891 Query 97290 TCCAATCTGTGCACGGAAATTGTAGAGTAC 97319 ||||| || ||||| |||||| | |||||| Sbjct 1881890 TCCAACCTTTGCACTGAAATTATCGAGTAC 1881861 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 741052604573120