Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Fusarium_20udum_20[genbank_20GCA_5F002194535.1_202017-06-15] 712 sequences; 56,380,608 total letters Query= NC_005309.1 Length=359853 Score E Sequences producing significant alignments: (Bits) Value seq556 134 3e-26 >seq556 Length=5145791 Score = 134 bits (148), Expect = 3e-26 Identities = 158/214 (74%), Gaps = 0/214 (0%) Strand=Plus/Plus Query 104348 AGTACTAGATGTAATGTAGATTCTTTCTGAATATTATAGTCAGATAGAGTTCTACCGTCT 104407 || || ||||| | || ||||| |||||||| || ||||| | || |||| |||||| Sbjct 1548563 AGGACGAGATGAAGGGTGGATTCCTTCTGAATGTTGTAGTCGGCAAGGGTTCGGCCGTCT 1548622 Query 104408 TCTAGTTGTTTTCCAGCAAAAATTAGCCTCTGTTGATCAGGAGGTATTCCTTCTTTATCC 104467 || ||||| ||||||||||| || || | ||| || |||||||| || || || || ||| Sbjct 1548623 TCGAGTTGCTTTCCAGCAAAGATCAGGCGCTGCTGGTCAGGAGGGATACCCTCCTTGTCC 1548682 Query 104468 TGAATCTTTGCTTTTACATTTTCTACGGTATCGCTAGGTTCTACCTCTAGTGTAATAGTC 104527 || ||||| | || ||||| || | ||||||| | || ||||| || || || ||| Sbjct 1548683 TGGATCTTCGACTTAACATTGTCGATGGTATCGGATGACTCGACCTCAAGGGTGATTGTC 1548742 Query 104528 TTACCAGTAAGTGTTTTTACAAATATCTGCATTT 104561 || ||||| || || || || | ||| | |||| Sbjct 1548743 TTGCCAGTGAGGGTCTTGACGACTATAAGGATTT 1548776 Score = 113 bits (124), Expect = 1e-19 Identities = 152/212 (72%), Gaps = 0/212 (0%) Strand=Plus/Plus Query 104348 AGTACTAGATGTAATGTAGATTCTTTCTGAATATTATAGTCAGATAGAGTTCTACCGTCT 104407 || || ||||| | || || || |||||||| || || ||||| ||||| | ||||| Sbjct 1548845 AGAACGAGATGCAGAGTGGACTCCTTCTGAATGTTGTAATCAGAGAGAGTGCGGCCGTCC 1548904 Query 104408 TCTAGTTGTTTTCCAGCAAAAATTAGCCTCTGTTGATCAGGAGGTATTCCTTCTTTATCC 104467 || || || || || || || || | | || || |||||||| || || || |||||| Sbjct 1548905 TCAAGCTGCTTGCCGGCGAAGATCAAGCGTTGCTGGTCAGGAGGGATACCCTCCTTATCC 1548964 Query 104468 TGAATCTTTGCTTTTACATTTTCTACGGTATCGCTAGGTTCTACCTCTAGTGTAATAGTC 104527 |||||||| | || || || || | || ||| || || ||||| || || || ||| Sbjct 1548965 TGAATCTTGGACTTGACGTTGTCGATAGTGTCGGAAGACTCAACCTCGAGGGTGATGGTC 1549024 Query 104528 TTACCAGTAAGTGTTTTTACAAATATCTGCAT 104559 || || || || || || ||||| |||||||| Sbjct 1549025 TTGCCGGTCAGGGTCTTGACAAAGATCTGCAT 1549056 Score = 107 bits (118), Expect = 4e-18 Identities = 144/198 (73%), Gaps = 2/198 (1%) Strand=Plus/Plus Query 104363 GTAGATTCTTTCTGAATATTATAGTCAGATAGAGTTCTACCGTCTTCTAGTTGTTTTCCA 104422 || || || ||||| || || ||||| | || | ||| ||||||| || || ||| Sbjct 1548122 GTTGACTCCTTCTGGATGTTGTAGTCGCTCAAGGTGCGACCATCTTCTAACTGCTTACCA 1548181 Query 104423 GCAAAAATTAGCCTCTGTTGATCAGGAGGTATTCCTTCTTTATCCTGAATCTTTGCT-TT 104481 || || || || | ||| |||||||| || || || || || ||||||||| ||||| || Sbjct 1548182 GCGAAGATAAGACGCTGCTGATCAGGGGGAATACCCTCCTTGTCCTGAATC-TTGCTCTT 1548240 Query 104482 TACATTTTCTACGGTATCGCTAGGTTCTACCTCTAGTGTAATAGTCTTACCAGTAAGTGT 104541 || || || | || || || | || ||||| || || || ||||| |||||||| || Sbjct 1548241 CACGTTGTCGATAGTGTCACTGGACTCGACCTCAAGGGTGATGGTCTTTCCAGTAAGAGT 1548300 Query 104542 TTTTACAAATATCTGCAT 104559 || ||||| |||||||| Sbjct 1548301 CTTCACAAAAATCTGCAT 1548318 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1151387896368096