Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Fusarium_20udum_20[genbank_20GCA_5F002194535.1_202017-06-15] 712 sequences; 56,380,608 total letters Query= NC_006998.1 Length=194711 Score E Sequences producing significant alignments: (Bits) Value seq223 159 4e-34 seq667 120 4e-22 >seq223 Length=6419709 Score = 159 bits (176), Expect = 4e-34 Identities = 566/876 (65%), Gaps = 18/876 (2%) Strand=Plus/Plus Query 63168 CCAGGACATTCATCCGGACACATCAACGACCACTCTCCGTCATCCTTCACTCGTTTCATA 63227 ||||| || || | || ||||||| | ||| || |||| | | || || ||||| Sbjct 1882093 CCAGGGCACTCGTTAGGGCACATCAGTGTCCAGTCACCGTTCTTTTCAACGCGCTTCATG 1882152 Query 63228 AAGAGATCAGGAATCCAAAGAGCTATAAATAGATCTCTGGTTCTATGTTCCTCGTTTCCT 63287 || ||||| || |||||||| || | || || || | || | | ||||| || || Sbjct 1882153 AAAAGATCGGGGATCCAAAGGGCAAGGAAAAGGTCACGGGCACGAACCTCCTCCTTACCG 1882212 Query 63288 GTATTCTTTTTAAGATCGAGGAACGCCATAATATCAGAATGCCACGGTTCCAAGTATATG 63347 ||||| ||||| ||||| | | | ||| || ||||| || || | ||| ||| Sbjct 1882213 TGGTTCTTACGGAGATCAAGGAATTCGAAGACATCGGAGTGCCAAGGCTCGAGGTAGATG 1882272 Query 63348 GCCATAACTCCAGGCCGTTTGTTTCCTCCCTGATCTATG------TATCTAGCGGTGTTA 63401 || | | | || || || ||||| || ||||| || | ||| ||||| Sbjct 1882273 GCAAAAGCACCGGGTCGCTTGTTGCCACCCTGGNNNNNNNNNNCATACCGAGCAGTGTTG 1882332 Query 63402 TTATAAACTCTCAACATTGGAATAATACCGTTTGATATACCATTGGTACCGGAGATATAG 63461 || | || | | ||| |||| || |||||| ||| |||| |||||||||| ||| || Sbjct 1882333 TTGAACACACGAAGCATAGGAACAACACCGTTCGATGTACCGTTGGTACCGGCGATGTAT 1882392 Query 63462 CTTCCACTGGCACGAATAT--TACTAATTGATAGACCTATTCCCCCTGCCATTTTAGAGA 63519 ||| | ||||| ||| | | ||| | |||| || || || ||||| || |||| Sbjct 1882393 GAGCCAGTAGCACGGATACGGTGCACATTCA--GACCAATACCACCAGCCATCTTGGAGA 1882450 Query 63520 TTAATGCGCATCGTTTTAACGTGTCATAGATACCCTCTATGCTATCATCGATCATGTTAA 63579 | | || || || | || || ||||| ||||| || || ||||| |||| | || Sbjct 1882451 TCATGGCACAGGTCTTGAGAGTATCGTAGATTCCCTCAATACTGTCATCCTTCATATCAA 1882510 Query 63580 GTAGAAAACAGCTAGACATTTGGTGACGACTAGTTCCCGCATTAAATAAGGTAGGAGAAG 63639 | || || |||| |||| | || || || || || || | || || |||| Sbjct 1882511 CCAAGAAGCAAGATGACAATTGGGGCTGAGGGGTGCCGGCGTTGAAGAGCGTGGGGGAAG 1882570 Query 63640 CGTGCGTAAACCATTTTTCAGAAAGTAGATTGTACGTCTCAATAGCTGAGTCTATATCC- 63698 | ||||| || | || || | |||||||| ||||| | || || ||||| Sbjct 1882571 CATGCGTGAAGAACTTGCTGGACATCAGATTGTATGTCTCCAAGACTCGCTCGATATCAT 1882630 Query 63699 CATTGATGAATTCCTACTGCGACACGCATTAACATGTGCTGAGGTCTTTCAACGATCTTG 63758 || || | || || | |||||||| | |||||||||||| | || || ||||| Sbjct 1882631 CACCCCAGA-TACCAACAGACACACGCATGATCATGTGCTGAGGGCGCTCGACAATCTTA 1882689 Query 63759 TTGTTTATTTTCAACAAGTAGGATTTTTCCAAAGTTTTAAAACCAAAATAGTTGTATGAA 63818 || || || | | ||| ||| |||||||| || || ||||| || | |||| Sbjct 1882690 CCGTCAATCTTGAGGAGGTATGATCGCTCCAAAGTCTTGAAGCCAAAGTATTGGTATTGG 1882749 Query 63819 AAGTCTCGTTCGTAAATAATAACCGAGTTGAGTTTATCCTTATATTTGTTAACTATATCC 63878 || || || || |||| ||| | |||| | | ||||||| | | || | | Sbjct 1882750 AAATCGCGGTCATAAACAATGGCAGAGTCCAACTCCTCCTTATGTCGCATGAC-GCACTC 1882808 Query 63879 ATGGTGATACTT-GAAATAATCGGAGAATGTTTCCCATTTTTAGGATTAACATAGTTGAA 63937 || | | ||| || || || || || | || || || || || ||||||| | | Sbjct 1882809 ATAGGTCTCCTTGGAGATCATGGGTGACGGCCGGCCGTTCTTGGGGTTCACATAGTGGTA 1882868 Query 63938 TAAATC-CTC-CATCACTTCACTAAATAGtttttttGTTTCCTTGTGTAGATTTGATACG 63995 | || ||| || || || || | || || || | |||||| || ||||| ||| Sbjct 1882869 GAGGTCGCTCACAACAGCCGAC--CATTGCTTCTTGGTCTGCTTGTGAAGGTTTGAGACG 1882926 Query 63996 GCTATTCTGGCGGCTAGAATGGCATAATCCGGATGT 64031 || || | |||||| ||||||||||| || |||||| Sbjct 1882927 GCAATACGGGCGGCAAGAATGGCATAGTCGGGATGT 1882962 >seq667 Length=3682606 Score = 120 bits (132), Expect = 4e-22 Identities = 360/551 (65%), Gaps = 10/551 (2%) Strand=Plus/Plus Query 33318 GTGCAGACCCTCGTCTCTACTAATTAGTTCGTTGGAAAACGTGAGTCCGGGCATTAGGCC 33377 ||| ||||||||||| | | || || |||||||| || || || |||||||| || || Sbjct 2045305 GTGAAGACCCTCGTCACGAGAGATGAGCTCGTTGGAGAAGGTCAGACCGGGCATGAGACC 2045364 Query 33378 ACGCTTTTTAAGCCAAAATATGGAAGCGAATGATCCAGAAAAGAAGATTCCTTCTACTGC 33437 |||||| || ||||| || || || ||||| | || |||||||| ||||| || || Sbjct 2045365 ACGCTTCTTGAGCCAGAAGATAGAGGCGAAGGCACCGCTGAAGAAGATACCTTCAACAGC 2045424 Query 33438 AGCAAAGGCAATAAGTCTCTCTCCATAACCGG---CGCTGTCATGTATCCA-CTTTTGAG 33493 ||| ||||||| || | | || | || | | || || ||||| | || | Sbjct 2045425 AGCGAAGGCAACGAGACGTTGGGCAAAGGAGGAGTCCTTATCTTGGATCCATCGGATG-G 2045483 Query 33494 CCCAATCGGCCTTCTTTTTTACACAAGGCATCGTTTCTATGGCATTAAAGAGATAGtttt 33553 |||| || ||||||||| | || || || || || ||||| || ||||| ||| || Sbjct 2045484 CCCAGTCAGCCTTCTTTCGGATGCAGGGAATGGTCTCAATGGCGTTGAAGAGGTAGGTTC 2045543 Query 33554 tttCATTACTATCTTTAACATAAGTATCGATCAAAAGACTATACATTTCCGAATGAATGT 33613 | || || | || || ||||| | || || | || || ||||||| Sbjct 2045544 GCTGGGCGGGCTCCTTGATGTAGGTGTCGATTAGGAGGGAGTAGGTCTCGGAGTGAATGT 2045603 Query 33614 TTTCAATGGCCATCTGAAATCCGTAGAAACATCTAGCCTCGGTAATCTGTACTTCTGTAC 33673 | || || ||||| || |||||||| || | |||||||| ||||| || || || Sbjct 2045604 TCTCCATCATGATCTGGAAGCCGTAGAAGCAACGAGCCTCGGGGATCTGGACCTCGCCAC 2045663 Query 33674 AAAATCGTTCCGCCAAATTTTCATTCACTATTCCGTCACTGGCTGCAAAAAACGCCAATA 33733 || || || | | || || || || || || ||| ||| || || || || | | Sbjct 2045664 TGAAACGCTCGACGAGGTTCTCGTTGACAATACCATCAGAGGCAGCGAAGAAAGCAAGGA 2045723 Query 33734 CATGTTTTATAAAATATTTTTCGTCTGGTGTTA---GTTTATTCCAATCATTGATATCTT 33790 || | || | | || || | || | | || ||||| || | || ||||| Sbjct 2045724 TGTGAGAGACGAAGAACTGCTCATCAGCAGTCAGGCGGTTGTTCCAGTCGTGGAGATCTT 2045783 Query 33791 TAGATATATCTACTTCTTCCACTGTCCAAAATGATGCCTCTGCCTTTTTATACATGTTCC 33850 | || | ||| | || || | ||||| || || ||||| ||||| || ||||| | || Sbjct 2045784 TGGAGAGATCAATCTCCTCAGCAGTCCAGAAGGAAGCCTCAGCCTTCTTGTACATTTGCC 2045843 Query 33851 AGA--TGTCAT 33859 | | |||||| Sbjct 2045844 AAATCTGTCAT 2045854 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 622941655769920