Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Fusarium_20udum_20[genbank_20GCA_5F002194535.1_202017-06-15] 712 sequences; 56,380,608 total letters Query= NC_007346.1 Length=407339 Score E Sequences producing significant alignments: (Bits) Value seq223 345 1e-89 >seq223 Length=6419709 Score = 345 bits (382), Expect = 1e-89 Identities = 1121/1715 (65%), Gaps = 64/1715 (4%) Strand=Plus/Minus Query 363400 AAGACGATGGAGAAATCCTACCTATCTCGT-ATCAATGGTGATATTGTTGAACGCCCGCA 363458 ||||| ||||| ||| ||||| ||| || | ||| | ||||| || ||||| || Sbjct 1882727 AAGACTTTGGAGCGATCATACCTC-CTCAAGATTGACGGTAAGATTGTCGAGCGCCCTCA 1882669 Query 363459 GCATATGTTAATGCGTGTTGCTATTGGTATCCATTGCCCGGATGTTGATGCCG--CGATT 363516 ||| ||| | |||||||| || |||||||| || || || |||| || ||| | Sbjct 1882668 GCACATGATCATGCGTGTGTCTGTTGGTATC---TG---GGGTGATGATATCGAGCGAGT 1882615 Query 363517 ----GAAACATATAAGCTTCTAAGT---GCTCGTGTATTCACGCACGCCACGCCAACAAT 363569 || ||||| || || | || || || | |||||||| || | || || | Sbjct 1882614 CTTGGAGACATACAATCTGAT--GTCCAGCAAGT-TCTTCACGCATGCTTCCCCCACGCT 1882558 Query 363570 GTACAATGCTGGAACTCGTAATCCACAGATGTCTTCTTGCTTTCTTCTAAAAATGAAGGA 363629 | ||| || || || | | | || || |||| |||||||| | | | |||||||| Sbjct 1882557 CTTCAACGCCGGCACCCCTCAGCCCCAATTGTCATCTTGCTTCTTGGTTGATATGAAGGA 1882498 Query 363630 CGATTCCATCGAGGGTATCTTTGACACACTTAAGAATTGTGCTCTTATTTCCAAGAATGC 363689 || || ||||| |||| || || || |||| ||||| | || ||||||| || Sbjct 1882497 TGACAGTATTGAGGGAATCTACGATACTCTCAAGACCTGTGCCATGATCTCCAAGATGGC 1882438 Query 363690 AGGCGGAATTGGTGTATCGATCCACAATGTTCGTGC-ACAGAACAGTTACATTCGCGGCA 363748 || || |||||| | | ||| | | ||||| || | | ||||| ||| | Sbjct 1882437 TGGTGGTATTGGTCTGAATGTGCACCGTATCCGTGCTACTGG-CTCATACATCGCCGGTA 1882379 Query 363749 CAGGGGGATAC-TCGAATGGGCTGGTTCCCATGCTTCGTGTGTTTGACAATACTGCGAGG 363807 | || ||| ||||| || | ||||| |||||||||||||| |||| ||||| || Sbjct 1882378 CCAACGG-TACATCGAACGGTGTTGTTCCTATGCTTCGTGTGTTCAACAACACTGCTCGG 1882320 Query 363808 TACGTCGA------CCAGGGTGGAGGAAAGCGCAAAGGGGCGTTTGCTATGTATCTCGAG 363861 || | ||||||||| ||||| || || ||||| || || |||||| Sbjct 1882319 TATGNNNNNNNNNNCCAGGGTGGCAACAAGCGACCCGGTGCTTTTGCCATCTACCTCGAG 1882260 Query 363862 CCTCATCATGCCGATATTTTTGAGTTTCTTGAGCTCCGGAAAAACACGGGAAAAGAGGAA 363921 ||| || ||||| | || || || ||||| ||||| || ||| || || ||||| Sbjct 1882259 CCTTGGCACTCCGATGTCTTCGAATTCCTTGATCTCCGTAAGAACCACGGTAAGGAGGAG 1882200 Query 363922 TTGCGTGCACGTGATCTGTTCTATGCACTTTGGGTTTCTGACCATTTTATGAAGCGCGTG 363981 | ||||| ||||| || ||| ||| |||||| | | || | ||| ||||||||||| Sbjct 1882199 GTTCGTGCCCGTGACCTTTTCCTTGCCCTTTGGATCCCCGATCTTTTCATGAAGCGCGTT 1882140 Query 363982 GAGGCAGGTAAGA--ATTGGTCACTCTTTTGCCCACACGAATGTCCAGGTCTTTCCGATG 364039 || | | | | | ||| |||| | ||||| |||| || || || || |||| Sbjct 1882139 GAA--AAGAACGGTGACTGGACACTGATGTGCCCTAACGAGTGCCCTGGCCTCGCCGACT 1882082 Query 364040 TATGGGGTGACGACTATGTTGCTCTATACGAAAAGTATGAATCGGAGGGAAAGGCTCGTA 364099 | || || || | || ||||| ||||||||||| || || ||| |||| ||| | Sbjct 1882081 GCTACGGAGAGGAGTTTGAGGCTCTGTACGAAAAGTACGAGAAGGCGGGTAAGGGTCGCA 1882022 Query 364100 AGACAATTCCCGCACAGAAGCTATGGTTTGCCATCATGGATTCGCAGATTGAGACAGGAA 364159 |||| || || |||||||| |||| ||||| | || | |||| |||||| |||| Sbjct 1882021 AGACCATCAAGGCTCAGAAGCTGTGGTACGCCATTCTTGAGGCCCAGACTGAGACCGGAA 1881962 Query 364160 CACCCTATATGTTGTACAAAGATTCGTGCAACCGCAAGTCCAACCAGCAGCACCTTGGTA 364219 || | ||| | ||||| ||| | |||||||||||| |||||| || |||| |||| Sbjct 1881961 ACCCATTCATGCTCTACAAGGATGCCTGCAACCGCAAGAGCAACCAAAAGAACCTCGGTA 1881902 Query 364220 CAATTCAGCAG-AGCAACCTATGTACCGAGATTATTGAATACACCGCTCCCGACGAGACT 364278 | | || | || |||||| || || || ||||| || ||| || || |||||| Sbjct 1881901 CCA-TCCGAAGCTCCAACCTTTGCACTGAAATTATCGAGTACTGTGCCCCTGACGAGGTC 1881843 Query 364279 GCCGTATGTAACCTTGCGTCGATCGCGCTTCCGGCGTTTGTAA---AAGATGGTACT--- 364332 || || || ||||| || || | | || || | || | | | |||| || Sbjct 1881842 GCTGTCTGCAACCTCGCCTCTCTGTCTCTACCCTCCTTCATCAACTACGATGAGGCTTGC 1881783 Query 364333 TTTGACCACCAGCATCTTTATGACGTAAC-----CTATCA---TGCTACTTGCAATCTCG 364384 | ||| | || | || | ||| || || | |||| || Sbjct 1881782 TACGACTTCAAGAAGNNNNNNNNNNGCACAGGGTCAGTCAGGTTGTTATTCGCAACCTGA 1881723 Query 364385 ACAAGGTTATCGACAAGAATTATTATCCAATTCCTGAAGCCGAGC-GTTCTAATATGCGT 364443 ||||| | ||||| ||| | || || ||| | || | || ||| ||||| Sbjct 1881722 ACAAGATCATCGATGTGAACCACTA-CCCTGTCCAGGAGGCTCGCAACAGTAACATGCGC 1881664 Query 364444 CATCGCCCGATTGGTCTTGGTGTACAGGGCCTCGCTGACGTTTTTATGATGCTC--AAGA 364501 || || || |||||||||||||| |||||||| ||||| | ||| | ||||| | Sbjct 1881663 CACCGACCCATTGGTCTTGGTGTTCAGGGCCTGGCTGATGCTTTCCT--TGCTCTGCGTA 1881606 Query 364502 TGGCATTTGATTCGCCTGACGCTCGTGTTCTAAATAAGGAGATCTTTGAAACAATGTATT 364561 || | || || || || || ||||||| || || ||| |||||||||| || || ||| Sbjct 1881605 TGCCCTTCGAGTCACCCGAGGCTCGTGAGCTCAACAAGCAGATCTTTGAGACCATTTATC 1881546 Query 364562 TTGCCGCAATGACTG-CTTCGTGTGATTTGGCAAAAACCAAGGGAAAGTACTCTACTTAT 364620 ||| || | |||| || |||| | |||| ||| |||| ||||| || | Sbjct 1881545 ATGCTGCTCTCACTGCCTCCGTG-CAGCTGGCCAAAGAGGAGGGTCCCTACTCCACCTTC 1881487 Query 364621 GAGGGGTCCCCTCTTTCGCAGGGAAAATTCCAGTTTGATCTATGGAATGTCACGCCATCT 364680 |||| ||||| || |||| | ||||||||||| | ||||| |||| ||| ||| Sbjct 1881486 AAGGGTTCCCCCACCTCCGAGGGTATCCTCCAGTTTGATATGTGGAACGTCAAGCCCTCT 1881427 Query 364681 GTCCGATGGAACTGGGATACGCTACGTTCCAACGTTAAGAAGCATGGTACTCGCAAC--T 364738 | || ||| ||||||| || || || | || |||| || || | || ||| | Sbjct 1881426 GACCTCTGGGACTGGGAGACTCTTCGAGAGGAAGTCAAGACACACGGCATCCGTAACAGT 1881367 Query 364739 C-CCTCGTTACAGCGCCCATGCCCACGGCTTCTACTGCACAGATCCTCGGAAACAACGAG 364797 | ||| || || || ||||| || || ||| | ||||| || || ||||||||| Sbjct 1881366 CTGCTCCTT---GCTCCTATGCCTACTGCCAGTACCTCCCAGATTCTGGGCAACAACGAG 1881310 Query 364798 TGCTTCGAACCGTTTACAAGCAATCTTTATTCACGCCGGGTTCTTTCCGGAGAATTTCCG 364857 |||||||| || | || |||| | || |||||| ||||| | || || || | | Sbjct 1881309 TGCTTCGAGCCCTACACCTCCAATATCTACCAACGCCGTGTTCTCGCTGGTGAGTTCCAG 1881250 Query 364858 GTAGTTAATAAGTACCTAGTCAAGGATCTTTCCGACCGCGGGCTGTGGGGTGACAGCATG 364917 || || ||| | || ||||||| ||| |||| || |||||| || ||| Sbjct 1881249 GTTGTCAATCCCTGGCTGCTCAAGGACCTTGTCGACATGGGTCTGTGGTCCGATGCTATG 1881190 Query 364918 AAGAACTATATCATCGCCGCTAATGGTTCTGTGCAGAACATTCCAGGATTTCCAGAAGAT 364977 |||||| ||||| || | |||||||| | ||||||||||| | || | ||| Sbjct 1881189 AAGAACCGCATCATTGCTGAGAATGGTTCCATTCAGAACATTCCCAACATCCCTGCCGAT 1881130 Query 364978 CTGAAGCCTATTTACAAAACCGTATGGGAAATTTCCATGCGAACTCTCATTGATATGGCG 365037 | ||| || | || || || || ||||| ||||| ||| || || | ||||| Sbjct 1881129 GTCAAGGCTCTGTATAAGACTGTTTGGGAGATTTCTCAGCGCCAGGTCGTTCAGATGGCT 1881070 Query 365038 GCCGATCGCGGTGCTTTTATCTGTCAGAGCCAGTC 365072 || ||||| || || || || |||| |||||| Sbjct 1881069 GCTGATCGAGGCGCCTTCATTGATCAGTCCCAGTC 1881035 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1303341710156784