Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Fusarium_20udum_20[genbank_20GCA_5F002194535.1_202017-06-15] 712 sequences; 56,380,608 total letters Query= NC_008291.1 Length=198050 Score E Sequences producing significant alignments: (Bits) Value seq223 159 4e-34 >seq223 Length=6419709 Score = 159 bits (176), Expect = 4e-34 Identities = 707/1105 (64%), Gaps = 26/1105 (2%) Strand=Plus/Plus Query 62798 ATTATCTCAGTGCAAAGATTACTACACTTGATGGTTCCTAAATTTTGTTGATTACTCTTT 62857 || || ||||||||||| || | |||||| || | || | ||| || ||||| Sbjct 1881868 ATAATTTCAGTGCAAAGGTTGGAGCTTCGGATGGTACCGAGGTTCTTTTGGTTGCTCTTG 1881927 Query 62858 TTGTTACACGCATCCTTATAAAGAATGAATGGAGTACCAGTTTCAATCTGAGATTCTATA 62917 ||| || |||||||| || || |||||||| | || || ||| |||| | || | | Sbjct 1881928 CGGTTGCAGGCATCCTTGTAGAGCATGAATGGGTTTCCGGTCTCAGTCTGGGCCTCAAGA 1881987 Query 62918 ATCGCTTTCCAGACGACTC-GAGCCTTTATTATAGATTTGTATCTCTTTTCT--CTT-TC 62973 || || | ||| | | || ||||||| || | ||| | ||| | ||| || Sbjct 1881988 ATGGCGTACCACA-GCTTCTGAGCCTTGATGGTC---TTGCGACCCTTACCCGCCTTCTC 1882043 Query 62974 GTATAGTGTATACAATCGTTCGAACTCGTCTCCCCAAACATTGTCCAGTCCAGGACATTC 63033 ||| | |||| || ||||| ||||| | | | | || ||||| || || Sbjct 1882044 GTACTTTTCGTACAGAGCCTCAAACTCCTCTCCGTAGCAGTCGGCGAGGCCAGGGCACTC 1882103 Query 63034 ATCCGGACACATCAACGACCACTCTCCGTCATCCTTCACTCGTTTCATAAAGAGATCAGG 63093 | || ||||||| | ||| || |||| | | || || ||||| || ||||| || Sbjct 1882104 GTTAGGGCACATCAGTGTCCAGTCACCGTTCTTTTCAACGCGCTTCATGAAAAGATCGGG 1882163 Query 63094 AATCCAAAGAGCTATAAATAGATCTCTGGTTCTATGTTCCTCGTTTCCTGTATTCTTTTT 63153 |||||||| || | || || || | || | | ||||| || || ||||| Sbjct 1882164 GATCCAAAGGGCAAGGAAAAGGTCACGGGCACGAACCTCCTCCTTACCGTGGTTCTTACG 1882223 Query 63154 AAGATCGAGGAACGCCATAATATCAGAATGCCACGGTTCCAAGTATATGGCCATAACTCC 63213 ||||| ||||| | | | ||| || ||||| || || | ||| ||||| | | | || Sbjct 1882224 GAGATCAAGGAATTCGAAGACATCGGAGTGCCAAGGCTCGAGGTAGATGGCAAAAGCACC 1882283 Query 63214 AGGCCGTTTGTTTCCTCCCTGATCTATG------TATCTAGCGGTGTTATTATAAACTCT 63267 || || ||||| || ||||| || | ||| ||||| || | || | Sbjct 1882284 GGGTCGCTTGTTGCCACCCTGGNNNNNNNNNNCATACCGAGCAGTGTTGTTGAACACACG 1882343 Query 63268 CAACATTGGAATAATACCATTGGATGTACCATTGGTCCCTGAGATATAGCTTCCACTGGC 63327 | ||| |||| || ||| || |||||||| ||||| || | ||| || ||| | || Sbjct 1882344 AAGCATAGGAACAACACCGTTCGATGTACCGTTGGTACCGGCGATGTATGAGCCAGTAGC 1882403 Query 63328 ACGAATAT--TACTAATTGATAGACCTATTCCCCCTGCCATTTTAGAGATTAATGCGCAT 63385 ||| ||| | | ||| | |||| || || || ||||| || ||||| | || || Sbjct 1882404 ACGGATACGGTGCACATTCA--GACCAATACCACCAGCCATCTTGGAGATCATGGCACAG 1882461 Query 63386 CGTTTTAACGTATCATAGATGCCCTCTATACTATCATCCATCATGTTAAGTAGAAAACAG 63445 || | ||||| ||||| ||||| ||||| |||||| |||| | || | || || Sbjct 1882462 GTCTTGAGAGTATCGTAGATTCCCTCAATACTGTCATCCTTCATATCAACCAAGAAGCAA 1882521 Query 63446 CTAGACATTTGGTGACGACTAGTTCCCGCATTAAATAAGGTAGGAGAAGCGTGAGTAAAC 63505 |||| |||| | || || || || || || | || || ||||| || || || Sbjct 1882522 GATGACAATTGGGGCTGAGGGGTGCCGGCGTTGAAGAGCGTGGGGGAAGCATGCGTGAAG 1882581 Query 63506 CATTTTTCAGAAAGTAGATTGTACGTCTCAATAGCTGAGTCTATATCC-CATTGATGAAT 63564 | || || | |||||||| ||||| | || || ||||| || || | Sbjct 1882582 AACTTGCTGGACATCAGATTGTATGTCTCCAAGACTCGCTCGATATCATCACCCCAGA-T 1882640 Query 63565 TCCTACTGCGACACGCATTAACATGTGCTGAGGTCTTTCAACGATCTTGTTGTTTATTTT 63624 || || | |||||||| | |||||||||||| | || || ||||| || || || Sbjct 1882641 ACCAACAGACACACGCATGATCATGTGCTGAGGGCGCTCGACAATCTTACCGTCAATCTT 1882700 Query 63625 CAACAAGTAGGATTTTTCCAAAGTTTTAAAACCAAAATAGTTGTATGAAAAGTCTCGTTC 63684 | | ||| ||| |||||||| || || ||||| || | |||| || || || || Sbjct 1882701 GAGGAGGTATGATCGCTCCAAAGTCTTGAAGCCAAAGTATTGGTATTGGAAATCGCGGTC 1882760 Query 63685 GTAAATAATAACCGAGTTGAGTTTATCCTTATATTTGTTAACTACATCCATGGTAATACT 63744 |||| ||| | |||| | | ||||||| | | || || ||| | | || Sbjct 1882761 ATAAACAATGGCAGAGTCCAACTCCTCCTTATGTCGCATGAC-GCACTCATAGGTCTCCT 1882819 Query 63745 T-GAAATAATAGGAAAATGTTTCCCATTTTTAGGATTGACATAGTTGAATAAATC-CTC- 63801 | || || || || | | || || || || || ||||||| | | | || ||| Sbjct 1882820 TGGAGATCATGGGTGACGGCCGGCCGTTCTTGGGGTTCACATAGTGGTAGAGGTCGCTCA 1882879 Query 63802 CATCACTTCACTAAATAGtttttttGTTTCTTTGTGTAGATTTGATACGGCTATTCTAGC 63861 || || || || | || || || | ||||| || ||||| ||||| || | || Sbjct 1882880 CAACAGCCGAC--CATTGCTTCTTGGTCTGCTTGTGAAGGTTTGAGACGGCAATACGGGC 1882937 Query 63862 GGCTAGAATGGCATAATCCGGATGT 63886 ||| ||||||||||| || |||||| Sbjct 1882938 GGCAAGAATGGCATAGTCGGGATGT 1882962 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 633626360675200