Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Fusarium_20udum_20[genbank_20GCA_5F002194535.1_202017-06-15] 712 sequences; 56,380,608 total letters Query= NC_008603.1 Length=321240 Score E Sequences producing significant alignments: (Bits) Value seq667 129 1e-24 seq691 98.7 2e-15 seq556 98.7 2e-15 >seq667 Length=3682606 Score = 129 bits (142), Expect = 1e-24 Identities = 252/369 (68%), Gaps = 14/369 (4%) Strand=Plus/Plus Query 251563 TCGAAGAAATTAGACTTGCCCTCCAGAGAGATTAGCTCCATGAAGTCGAAGGGGTTTGTG 251622 |||||||| || | |||||| |||| ||||| ||||||||||||||||||||| ||| Sbjct 2045024 TCGAAGAAGTTGGTCTTGCCGCCCAGGGAGATGTTCTCCATGAAGTCGAAGGGGTTGGTG 2045083 Query 251623 GCATTGTACTGCTTGGGATGGCCAAGTGCTACGAAGATGCGGTCTGCCACAAACTCCAGA 251682 || ||||| ||| | |||||| || || | || || || || || ||||| | Sbjct 2045084 GCCTTGTAGACCTTCTCGTTGCCAAGAGCGACAAGGAGACGATCAGCGACGAACTCAATG 2045143 Query 251683 TACTGTCCCATCAGTTCAGAGTTCATGCCAATCATACGACAAGGAATTGCCTCACAGATG 251742 ||||| ||| || |||||||||||||| | | ||| |||| |||||| || | Sbjct 2045144 TACTGCTTCATGAGGTCAGAGTTCATGCCGAGGAGGGCACAGGGAAGAGCCTCAGTGAGG 2045203 Query 251743 AATTCCTTTTCGTTGGCAACTGCCTCCTCCACAATTGCCT---TCACCTG--TGCCAG-- 251795 || |||| || ||| || || || | || ||| ||| ||| ||| | Sbjct 2045204 AACTCCTGCTCAATGGTGACGGCGTCAGTGATGATATCCTGGATCATCTGCTTGCTGGCA 2045263 Query 251796 AGACAGCTTGTTCTCCAGCTTTGAGTACAGGAGCTCGCCAAACTGTTGGTGCAGACCCTC 251855 ||| |||| || | |||| ||||| | |||| | ||| |||||||| Sbjct 2045264 CGAC-CCTTG------AGGTGAGAGTGGAGGAGGCAGGCAAAGTCAGTGTGAAGACCCTC 2045316 Query 251856 GTCGCGACTGATGAACTCGTTGGACAGACCCAGGCCAGGCATCACCCCACGGTTCCTGAG 251915 ||| ||| ||||| ||||||||| | ||| || ||||| | ||||| ||| |||| Sbjct 2045317 GTCACGAGAGATGAGCTCGTTGGAGAAGGTCAGACCGGGCATGAGACCACGCTTCTTGAG 2045376 Query 251916 CCAGAAGAT 251924 ||||||||| Sbjct 2045377 CCAGAAGAT 2045385 >seq691 Length=3034478 Score = 98.7 bits (108), Expect = 2e-15 Identities = 159/226 (70%), Gaps = 2/226 (1%) Strand=Plus/Minus Query 279345 GGTGAGGATCTGTGTGACTGTGATTTCTCGCTCGCATATGGTGGGAAGATTCTGCTAAAC 279404 || |||||||| || ||||| ||||| || || || |||| |||||||| || ||| Sbjct 1625677 GGCGAGGATCTTTGCAACTGTACCTTCTCTCTTGCCTACGGTGCCAAGATTCTTCTTAAC 1625618 Query 279405 TCTACCCGCCTCAACATCAAGCGTGGCAACCGGTATGGTCTCATCGGTCCCAATGGAGCG 279464 || | ||| |||||||||| | || || ||||| ||||||||| || | Sbjct 1625617 CAGACTCATCTCCGTCTCAAGCGTGGTCAGCGTTACGGTCTTTGCGGTCCCAACGGTTCC 1625558 Query 279465 GGTAAGAGCACTCTAATGCGCGCCATTGCAAACGGTCAGCTGGAAGGATTTCCTAACGCA 279524 || ||| |||||| ||||||||||| |||| ||| | || || || ||||| ||| Sbjct 1625557 GGAAAGTCCACTCTTATGCGCGCCATCAACAACGAGCAGGTTGAGGGTTTCCCTAA-GCA 1625499 Query 279525 -TCTGAGGTAAGGACAGTGTATGTAGAGCACGACATCGACTCCTCT 279569 ||||| | ||| || | || ||||||||| | |||||| || Sbjct 1625498 GAGCGAGGTCAAGACTGTCTTCGTCGAGCACGACCTTGACTCCGCT 1625453 >seq556 Length=5145791 Score = 98.7 bits (108), Expect = 2e-15 Identities = 141/197 (72%), Gaps = 4/197 (2%) Strand=Plus/Plus Query 279695 AGTAGGTTCTCTGTCGGGTGGTTGGAAGATGAAGCTGGCCCTCACTCGCGCCATTCTACT 279754 ||| ||||| || || || |||||||||||||||||||| || | || || || || | Sbjct 2766407 AGTTGGTTCACTTTCTGGAGGTTGGAAGATGAAGCTGGCTCTGGCCCGAGCTATGCTTCA 2766466 Query 279755 GCGTGCCGATGTCCTACTGCTTGATGAGCCAACCAACCACATGGACACCACCAACGTAGC 279814 ||||||||| || || || || || || || || ||||| |||| ||||| | || Sbjct 2766467 GCGTGCCGACGTTCTCCTTCTGGACGAACCTACTAACCATCTGGATGTTGCCAACATCGC 2766526 Query 279815 CTGGCTAGTGTCCTACCTAACCAGTCTGA--AGAATGTTTCTTCCCTCATTGTCTCTCAC 279872 |||||| | | |||||| | ||||| | || | | |||||||| |||||| Sbjct 2766527 CTGGCTCGAGAACTACCT--CAAGTCTCATCCCGATATCACCAGTCTCATTGTTTCTCAC 2766584 Query 279873 GACTCTGGCTTCCTAGA 279889 ||||| || ||||| || Sbjct 2766585 GACTCCGGATTCCTGGA 2766601 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1027827423558792