Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Fusarium_20udum_20[genbank_20GCA_5F002194535.1_202017-06-15] 712 sequences; 56,380,608 total letters Query= NC_008724.1 Length=288047 Score E Sequences producing significant alignments: (Bits) Value seq667 170 4e-37 seq556 167 4e-36 seq223 143 5e-29 seq691 98.7 2e-15 >seq667 Length=3682606 Score = 170 bits (188), Expect = 4e-37 Identities = 174/227 (77%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 68235 CCTCCGCGAAGGCGCAATACCAAGTGTAGCGTGGACTCTTTTTGGATGTTATAATCGGAG 68294 || || || ||||| | |||| ||| || |||||||| || |||||||| || ||| Sbjct 3145081 CCACCACGGAGGCGGAGGACCAGGTGGAGGGTGGACTCCTTCTGGATGTTGTAGTCGCTC 3145140 Query 68295 AGTGTCCTCCCATCTTCTAACTGCTTCCCGGCGAATATGAGTCTTTGTTGGTCGGGTGGA 68354 || || | ||||| || | |||||| || || || ||||| | || |||||||| || Sbjct 3145141 AGGGTGCGGCCATCCTCGAGCTGCTTGCCAGCAAAGATGAGGCGCTGCTGGTCGGGGGGG 3145200 Query 68355 ATGCCTTCCTTGTCTTGAATCTTTGCCTTGACGGCCTCGATGGTGTCTGCTGATTCTACT 68414 ||||| |||||||| || ||||| | ||||||| ||||||||||| | || || || Sbjct 3145201 ATGCCCTCCTTGTCCTGGATCTTGGACTTGACGTTGTCGATGGTGTCGGAAGACTCCACC 3145260 Query 68415 TCCAAGGTGATGGTTTTTCCCGTGAGGGTCTTGACGAATATCTGCAT 68461 || | |||||| || || |||||||||||||||||||| |||||||| Sbjct 3145261 TCAAGGGTGATCGTCTTCCCCGTGAGGGTCTTGACGAAAATCTGCAT 3145307 >seq556 Length=5145791 Score = 167 bits (184), Expect = 4e-36 Identities = 173/227 (76%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 68235 CCTCCGCGAAGGCGCAATACCAAGTGTAGCGTGGACTCTTTTTGGATGTTATAATCGGAG 68294 || || ||||| || | |||||||| || || || || || |||||||| || || || Sbjct 1548320 CCACCACGAAGACGGAGAACCAAGTGGAGAGTAGATTCCTTCTGGATGTTGTAGTCTGAA 1548379 Query 68295 AGTGTCCTCCCATCTTCTAACTGCTTCCCGGCGAATATGAGTCTTTGTTGGTCGGGTGGA 68354 || || | ||||| |||| ||||| || ||||| ||||||| ||||| ||||| ||| Sbjct 1548380 AGAGTTCGACCATCCTCTAGTTGCTTGCCAGCGAAGATGAGTCGCTGTTGATCGGGAGGA 1548439 Query 68355 ATGCCTTCCTTGTCTTGAATCTTTGCCTTGACGGCCTCGATGGTGTCTGCTGATTCTACT 68414 || || ||||||||||| ||||| ||| || || ||||| || | ||| || ||| Sbjct 1548440 ATACCCTCCTTGTCTTGGATCTTGCTCTTCACATTATCAATGGTATCGGATGACTCGACT 1548499 Query 68415 TCCAAGGTGATGGTTTTTCCCGTGAGGGTCTTGACGAATATCTGCAT 68461 ||||| ||||| || ||||| || |||||||||||||| || ||||| Sbjct 1548500 TCCAAAGTGATAGTCTTTCCAGTAAGGGTCTTGACGAAGATTTGCAT 1548546 Score = 156 bits (172), Expect = 8e-33 Identities = 173/231 (75%), Gaps = 0/231 (0%) Strand=Plus/Plus Query 68235 CCTCCGCGAAGGCGCAATACCAAGTGTAGCGTGGACTCTTTTTGGATGTTATAATCGGAG 68294 || || |||||||| | || | || || |||||||| || || ||||| ||||| ||| Sbjct 1548830 CCACCACGAAGGCGGAGAACGAGATGCAGAGTGGACTCCTTCTGAATGTTGTAATCAGAG 1548889 Query 68295 AGTGTCCTCCCATCTTCTAACTGCTTCCCGGCGAATATGAGTCTTTGTTGGTCGGGTGGA 68354 || || | || || || | |||||| |||||||| || | | ||| ||||| || || Sbjct 1548890 AGAGTGCGGCCGTCCTCAAGCTGCTTGCCGGCGAAGATCAAGCGTTGCTGGTCAGGAGGG 1548949 Query 68355 ATGCCTTCCTTGTCTTGAATCTTTGCCTTGACGGCCTCGATGGTGTCTGCTGATTCTACT 68414 || || ||||| || |||||||| | ||||||| ||||| ||||| | || || || Sbjct 1548950 ATACCCTCCTTATCCTGAATCTTGGACTTGACGTTGTCGATAGTGTCGGAAGACTCAACC 1549009 Query 68415 TCCAAGGTGATGGTTTTTCCCGTGAGGGTCTTGACGAATATCTGCATTATG 68465 || | ||||||||| || || || ||||||||||| || |||||||| ||| Sbjct 1549010 TCGAGGGTGATGGTCTTGCCGGTCAGGGTCTTGACAAAGATCTGCATGATG 1549060 Score = 140 bits (154), Expect = 6e-28 Identities = 167/227 (74%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 68235 CCTCCGCGAAGGCGCAATACCAAGTGTAGCGTGGACTCTTTTTGGATGTTATAATCGGAG 68294 || |||||||| || | || | ||| || || ||||| || |||||||| || ||| Sbjct 1548092 CCACCGCGAAGTCGGAGAACGAGGTGGAGGGTTGACTCCTTCTGGATGTTGTAGTCGCTC 1548151 Query 68295 AGTGTCCTCCCATCTTCTAACTGCTTCCCGGCGAATATGAGTCTTTGTTGGTCGGGTGGA 68354 | || | ||||||||||||||||| || ||||| || || | || || || || ||| Sbjct 1548152 AAGGTGCGACCATCTTCTAACTGCTTACCAGCGAAGATAAGACGCTGCTGATCAGGGGGA 1548211 Query 68355 ATGCCTTCCTTGTCTTGAATCTTTGCCTTGACGGCCTCGATGGTGTCTGCTGATTCTACT 68414 || || |||||||| |||||||| ||| ||| ||||| ||||| || || || Sbjct 1548212 ATACCCTCCTTGTCCTGAATCTTGCTCTTCACGTTGTCGATAGTGTCACTGGACTCGACC 1548271 Query 68415 TCCAAGGTGATGGTTTTTCCCGTGAGGGTCTTGACGAATATCTGCAT 68461 || | ||||||||| ||||| || || ||||| || || |||||||| Sbjct 1548272 TCAAGGGTGATGGTCTTTCCAGTAAGAGTCTTCACAAAAATCTGCAT 1548318 Score = 114 bits (126), Expect = 2e-20 Identities = 158/221 (71%), Gaps = 0/221 (0%) Strand=Plus/Plus Query 68235 CCTCCGCGAAGGCGCAATACCAAGTGTAGCGTGGACTCTTTTTGGATGTTATAATCGGAG 68294 || || || ||||| | || | || || ||||| || || || ||||| || |||| Sbjct 1548548 CCACCACGGAGGCGGAGGACGAGATGAAGGGTGGATTCCTTCTGAATGTTGTAGTCGGCA 1548607 Query 68295 AGTGTCCTCCCATCTTCTAACTGCTTCCCGGCGAATATGAGTCTTTGTTGGTCGGGTGGA 68354 || || | || ||||| | ||||| || || || || || | || ||||| || || Sbjct 1548608 AGGGTTCGGCCGTCTTCGAGTTGCTTTCCAGCAAAGATCAGGCGCTGCTGGTCAGGAGGG 1548667 Query 68355 ATGCCTTCCTTGTCTTGAATCTTTGCCTTGACGGCCTCGATGGTGTCTGCTGATTCTACT 68414 || || |||||||| || ||||| | ||| || |||||||| || | ||| || || Sbjct 1548668 ATACCCTCCTTGTCCTGGATCTTCGACTTAACATTGTCGATGGTATCGGATGACTCGACC 1548727 Query 68415 TCCAAGGTGATGGTTTTTCCCGTGAGGGTCTTGACGAATAT 68455 || | |||||| || || || |||||||||||||||| ||| Sbjct 1548728 TCAAGGGTGATTGTCTTGCCAGTGAGGGTCTTGACGACTAT 1548768 >seq223 Length=6419709 Score = 143 bits (158), Expect = 5e-29 Identities = 139/179 (78%), Gaps = 0/179 (0%) Strand=Plus/Plus Query 68274 TTTTGGATGTTATAATCGGAGAGTGTCCTCCCATCTTCTAACTGCTTCCCGGCGAATATG 68333 || |||||||| || |||||||| || | ||||| || | |||||| || ||||| || Sbjct 4545367 TTCTGGATGTTGTAGTCGGAGAGAGTTCGGCCATCCTCGAGCTGCTTACCAGCGAAGATC 4545426 Query 68334 AGTCTTTGTTGGTCGGGTGGAATGCCTTCCTTGTCTTGAATCTTTGCCTTGACGGCCTCG 68393 |||| |||||||| || || ||||| |||||||| || ||||| | |||||| ||| Sbjct 4545427 AGTCGCTGTTGGTCAGGGGGGATGCCCTCCTTGTCCTGGATCTTGGACTTGACATTGTCG 4545486 Query 68394 ATGGTGTCTGCTGATTCTACTTCCAAGGTGATGGTTTTTCCCGTGAGGGTCTTGACGAA 68452 |||||||| | || || || || | ||||||||| || ||||| |||||||| ||||| Sbjct 4545487 ATGGTGTCCGAGGACTCGACCTCGAGGGTGATGGTCTTGCCCGTCAGGGTCTTCACGAA 4545545 >seq691 Length=3034478 Score = 98.7 bits (108), Expect = 2e-15 Identities = 437/677 (65%), Gaps = 39/677 (6%) Strand=Plus/Plus Query 224981 CGCCACTGGATGTACTGGTTGGGGGTCATGTCCAGGTGGTTCTCAATATGGTGGAAAGCA 225040 ||||| |||||||||| | || ||| |||| || ||||| || || || ||||||| Sbjct 1624668 CGCCATTGGATGTACTCGGAAGGAGTCTTGTCAAGATGGTTATCGATGTGAGCGAAAGCA 1624727 Query 225041 TGCTGGGCTACGTACGCCATGCGCATGTTGGGATGCTTCCACACAGAGCCCCGAGT-CGG 225099 ||||| | ||| || || || ||||| |||| | | ||| |||| || Sbjct 1624728 TGCTGCTTGATGTAGGCGATACGGATGTTCTCGTGCTGGTAGATCTCACCCTGAGTGGGG 1624787 Query 225100 TTGTGCCTCGCCGGTGAGGACCTTGATGAGCGTAGTCTTGCCCGCACCATTGGGGCCAAT 225159 || | ||| || ||||| || || || || |||| |||||| ||||| ||||| || || Sbjct 1624788 ATGAG-CTCACCAGTGAGCACGTTAATCAGAGTAGACTTGCCAGCACCGTTGGGACCGAT 1624846 Query 225160 CACGCCAATCCGGGATGACATTGCAACCTGCGAGTTCACGT--TG---CTGAAGATCTCA 225214 ||| |||| ||||| || | ||| || | || || |||| | | | Sbjct 1624847 GACGGCAATACGGGAGCCCAAAGAGCACTGGAAGGAGATGTCCTGGATCTGAGGCTTGGA 1624906 Query 225215 GG-GCCAGTTTGGTAAGCAAAGGCCA------CGCCACGCAGCTTCATGATGGCACGGTC 225267 || |||| |||| |||| || | |||| || ||||| | | Sbjct 1624907 GGTACCAG---GGTACTGGAAGGACATGTTGGTGGCACGGAG------AATGGCCTTGGC 1624957 Query 225268 CTTGGAAGTAATACCCTCCAGGAACCCGGGCTCGGGGAACTCCCACTTGGTCACCGCGTC 225327 ||||| | | |||||| ||||| |||||||| ||||| ||| || | | || Sbjct 1624958 CTTGGTCTTGACACCCTCGAGGAAACCGGGCTCAGGGAAAGTGAACTCCATCTCGGACTC 1625017 Query 225328 CTTCAGGTCGTAGTAAGA---TGCAGCCTCGGGTCGCTTTGCCACGAAAGCAGACAGGTT 225384 || ||||||||||| |||| |||| || || ||||| |||| |||||| Sbjct 1625018 ACCAAGCTCGTAGTAAGACTTGGCAG--AGGGGTTGC-GGGCGACGAAGGCAGCCAGGTT 1625074 Query 225385 TCCGAGGTGCTTCGTGAGCTTGAGGTTCTTCTCGTAATGAACAAT-TGCCGAGCACACTG 225443 || || | ||||||||| | |||||| || || || ||| | ||| || Sbjct 1625075 ACCCTTGTAGCGCTTGAGCTTGAAG---CGCTCGTAGTGGACGATGTGCTG-GCAGACGT 1625130 Query 225444 CGTCAAGGAAGCCAGAGTCGTGGGACACAATGATGGACG-ACACGTTCGTCAGGCCCTTG 225502 ||| ||||| ||||||||||| || || |||||||| | || | | | | || Sbjct 1625131 TGTCGAGGAAACCAGAGTCGTGAGAGACGATGATGGAAGTGCAAG---GAGA-GTTGATG 1625186 Query 225503 AGGTGCGTGATGAGCCATGCCACGTTGCTGACGTCCATGTGGTTTGTAGGTTCGTCCAGA 225562 |||| | |||||| ||||| | || |||| ||||| ||||| ||||| ||| Sbjct 1625187 AGGTACTCCTCGAGCCACTTAACGTTCTTCACATCCAAATGGTTGGTAGGCTCGTCAAGA 1625246 Query 225563 AGCAGGATGTCAGCATCAATGAGGATGGCGCGCGTGAGAGACAGCTTCATTTTCCAGCCC 225622 ||||| || || | | | || || ||| || |||| |||||||| ||||| || Sbjct 1625247 AGCAGAATATCGGGAGCCTCGAAGACGGCACGGCACAGAGCGAGCTTCATCTTCCAACCA 1625306 Query 225623 CCGGACAGGGAGCCGAT 225639 || || |||| || ||| Sbjct 1625307 CCAGAAAGGGCGCTGAT 1625323 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 921614197560640