Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Fusarium_20udum_20[genbank_20GCA_5F002194535.1_202017-06-15] 712 sequences; 56,380,608 total letters Query= NC_009127.1 Length=295146 Score E Sequences producing significant alignments: (Bits) Value seq667 392 6e-104 seq223 266 6e-66 >seq667 Length=3682606 Score = 392 bits (434), Expect = 6e-104 Identities = 602/846 (71%), Gaps = 18/846 (2%) Strand=Plus/Minus Query 42309 ATGTACAAGAAGGCGCAGTTCTCCAACTGGACCGCCGAGGAGATTGACCTGGCCAAGGAC 42368 |||||||||||||| || ||| |||||| || ||||||||||| || |||| || Sbjct 2045838 ATGTACAAGAAGGCTGAGGCTTCCTTCTGGACTGCTGAGGAGATTGATCTCTCCAAAGAT 2045779 Query 42369 ACGGCCGGCTGGGAGTCA-----CTGTCTGAGAACGAAAAGTTTTTCCTCAAAAACATAC 42423 || |||| | || ||| ||| | || |||| ||| || |||| | Sbjct 2045778 CTCCACGACTGGAA--CAACCGCCTGACTGCTGATGAGCAGTTCTTCGTCTCTCACATCC 2045721 Query 42424 TGGCCTTCTTCGCCGCCTCTGACGGCATAGTCAATGAGAACCTGGCCACCAGGTTCATGA 42483 | || |||||||| |||||||| || || ||||| |||||||| | | | |||| Sbjct 2045720 TTGCTTTCTTCGCTGCCTCTGATGGTATTGTCAACGAGAACCTCGTCGAGCGTTTCAGTG 2045661 Query 42484 AAGAGGTGCAGTACTTTGAGGCGCGCTGCTTCTACGGCTTCCAGATAGCCATAGAGAACG 42543 ||||| ||| | ||||| || |||||||||||||||||||| || |||||| Sbjct 2045660 GCGAGGTCCAGATCCCCGAGGCTCGTTGCTTCTACGGCTTCCAGATCATGATGGAGAACA 2045601 Query 42544 TGCACTCTGAGGTGTACGCCAAACTGCTCAACACGTACATCCTGGATCCCGTCGAGCGTA 42603 | ||||| ||| ||| || || || |||| |||||| ||| |||| | |||| | Sbjct 2045600 TTCACTCCGAGACCTACTCCCTCCTAATCGACACCTACATCAAGGAGCCCGCCCAGCGAA 2045541 Query 42604 ACGGGCTGTTCAAGGCCATGGAGACGATGCCCTGCATCAAGAAGAAGGCGGACTGGGCGC 42663 | || ||||| ||||| ||||| || ||||||||| |||||||| |||||||| Sbjct 2045540 CCTACCTCTTCAACGCCATTGAGACCATTCCCTGCATCCGAAAGAAGGCTGACTGGGCCA 2045481 Query 42664 TCAACTGGATCGAGAGTCCCGACGCAACGTTCGGCGAGAGGCTGGTAGCCTTTACCGCCG 42723 || |||||| | | ||| | | || | | | | || || ||||| | || | Sbjct 2045480 TCCGATGGATCCAAGATAAGGACTCCTCCTTTGCCCAACGTCTCGTTGCCTTCGCTGCTG 2045421 Query 42724 TCGAGGGCATCTTCTTCTCGGGCGCCTTCGCCTCCATCTTCTGGCTCAAGCAG-AAGGTG 42782 | || || ||||||||| || ||||||||||| ||||||||||||||| || ||| Sbjct 2045420 TTGAAGGTATCTTCTTCAGCGGTGCCTTCGCCTCTATCTTCTGGCTCAAGAAGCGTGGTC 2045361 Query 42783 TCGATGCCCGGACTCACCTTCTCGAACGAACTCATCAGCAGGGACGAGGGGCTGCATAGG 42842 || |||||||| || |||||||| ||||| |||||| | |||||||| || || | Sbjct 2045360 TC-ATGCCCGGTCTGACCTTCTCCAACGAGCTCATCTCTCGTGACGAGGGTCTTCACACT 2045302 Query 42843 GACTTTGCCTGCCTCCTGTTCTCGAGCCACCTC-AGGCACAAGCCCTCGAAGGAGCGGGT 42901 ||||||||||||||||| ||| |||||| ||| | ||| | ||| || | | Sbjct 2045301 GACTTTGCCTGCCTCCTCCACTC---TCACCTCAAGGGTCGTGCCAGC-AAGCAGATGAT 2045246 Query 42902 CCGGGCCATCATCACGGAGGCCGTGGAGATCGAGAAGGAGTTCCTCACGCAGTCGCTGCC 42961 || || |||||||| || ||||| || ||| ||||||||||||| || | || || Sbjct 2045245 CCAGGATATCATCACTGACGCCGTCACCATTGAGCAGGAGTTCCTCACTGAGGCTCTTCC 2045186 Query 42962 C-GTGTCCCTGGTCGGCATGAACCACGACCTCATGTGCAAGTACATCCAGTACGTCGCCG 43020 | ||| |||| ||||||||||| ||||||||| ||||||| ||| |||||| | Sbjct 2045185 CTGTG-CCCTCCTCGGCATGAACTCTGACCTCATGAAGCAGTACATTGAGTTCGTCGCTG 2045127 Query 43021 ACCATCTCC-TGTGCCAGATGGGTCTCAGCCGCCTCTACAACACGCCGTGCCCCTTCGAC 43079 | | ||||| ||| | ||| || | ||||||| | | |||||||||| Sbjct 2045126 ATCGTCTCCTTGTCGCTCTTGGCAACGAGAAG-GTCTACAAGGCCACCAACCCCTTCGAC 2045068 Query 43080 TTTATGGAGAACATCTCGTTGGAGGGCAAGACCAACTTTTTCGAGAAGCGCGTCGCCGAC 43139 || |||||||||||||| ||| |||||||||||||| |||||||||||||| |||||| Sbjct 2045067 TTCATGGAGAACATCTCCCTGGGCGGCAAGACCAACTTCTTCGAGAAGCGCGTTGCCGAC 2045008 Query 43140 TACCAG 43145 |||||| Sbjct 2045007 TACCAG 2045002 >seq223 Length=6419709 Score = 266 bits (294), Expect = 6e-66 Identities = 874/1346 (65%), Gaps = 35/1346 (3%) Strand=Plus/Plus Query 244091 TTCACCACCTGAAACTCTCCCGACAGCACGCGGCGCTGGTAGAGGTTGCTGCTGAGCGGC 244150 || || ||||| ||||| || | || || ||||| ||||||| ||| | || ||| Sbjct 1881242 TTGACAACCTGGAACTCACCAGCGAGAACACGGCGTTGGTAGATATTGGAGGTGTAGGGC 1881301 Query 244151 TCGATGCTCTCCGTGTTGCCCAGTATCTGCGCCGTGCTCGCAGTCGGCATGGGCGACACC 244210 |||| || ||| |||||||||| ||||| | || || ||||| ||||| || | | Sbjct 1881302 TCGAAGCACTCGTTGTTGCCCAGAATCTGGGAGGTACTGGCAGTAGGCATAGGAGCAAGG 1881361 Query 244211 AGCAGACTGTTCCTCACGCCGTGCCTCTGGA-TGCGGAGTCTGAGCTCGTTCCAGTCCCA 244269 ||||||||||| | | |||||| ||| || | | || |||| |||| | Sbjct 1881362 AGCAGACTGTTACGGATGCCGTGTGTCTTGACTTC-----CT---CTCGAAG-AGTCTCC 1881412 Query 244270 CATGCCCGAGAGGTCCTCGCGTTTGAGGCCCCACATGTCAAACTGCAGCAGCCCCTTGCT 244329 || ||| ||||||| | | |||| | |||||| |||||||| || | |||| | Sbjct 1881413 CAGTCCC-AGAGGTCAGAGGGCTTGACGTTCCACATATCAAACTGGAGGATACCCTCGGA 1881471 Query 244330 GACGGGGCTGCCCTCGTAGGTCGGGTAGGGACCGTCGCGCTGGGCCAGCTT-ACAGCTCT 244388 | |||| |||| | |||| | ||||||||| || | |||||||| || | Sbjct 1881472 GGTGGGGGAACCCTTGAAGGTGGAGTAGGGACCCTCCTCTTTGGCCAGCTGCACGGAGGC 1881531 Query 244389 CGTCGAGGGCGGCGTAGTAGATGGTCTCGAAGATCATCTTGTTCATGTCGCGGGCCTTGC 244448 || ||| || || | || |||||||| |||||| |||||| | || || |||| | Sbjct 1881532 AGT-GAGAGCAGCATGATAAATGGTCTCAAAGATCTGCTTGTTGAGCTCACGAGCCTCGG 1881590 Query 244449 CGCAGGTGAAGGGGATGCCCATCATCATGAAGACGTCGGCCAGTCCCTGCACGCCGATGC 244508 | |||||| || | || | ||| | || ||||| ||||| || || | | Sbjct 1881591 GTGACTCGAAGGGCATACGCAGAGCAAGGAAAGCATCAGCCAGGCCCTGAACACCAAGAC 1881650 Query 244509 CGATGGGTCTGTGTCGCTTGTTGGAGC-GCATGGCTTCGGGCACGGGGTAAAAGTTGCCG 244567 | ||||||| ||| ||| |||| | || | || | || || ||||| ||| | Sbjct 1881651 CAATGGGTCGGTGGCGCATGTTACTGTTGCGAGCCTCCTGG-ACAGGGTAGTGGTTCACA 1881709 Query 244568 TCGATCACCTTGTTGAGGTTGCGGGTGATCATGCGGAC-GACGTCGGCCAGCAGCTGAAA 244626 ||||| | |||||| |||||||| | | || | ||| ||| | | Sbjct 1881710 TCGATGATCTTGTTCAGGTTGCGAATAA-CAACCTGACTGACCCTGTGCNNNNNNNNNNC 1881768 Query 244627 GTCGT--ACTCGTAGGGATCCTCGGCGATGGTGATCCTCACAAACTCGTTGAGGGCGACG 244684 || | | |||||| | |||| || | |||| | || ||| || Sbjct 1881769 TTCTTGAAGTCGTAGCAAGCCTCATCGTAGTTGATGA----AGGAGGGTAGAGACAGAGA 1881824 Query 244685 CTGGCCAGGTTGCAGACGGCCACCTCCTCCGAGTTGGTGTACTGGACAATCTCGGTGCAG 244744 ||| ||||||||||| || ||||| || | | ||||| || ||| || ||||| Sbjct 1881825 --GGCGAGGTTGCAGACAGCGACCTCGTCAGGGGCACAGTACTCGATAATTTCAGTGCAA 1881882 Query 244745 AGGTTACTGCACTTGATGGTGCCCAGGTGCTGGTGATTGGACTTGGCGTTGCAGGCGTCC 244804 ||||| || |||||| || |||| || || ||| |||| ||||||||| ||| Sbjct 1881883 AGGTTGGAGCTTCGGATGGTACCGAGGTTCTTTTGGTTGCTCTTGCGGTTGCAGGCATCC 1881942 Query 244805 TTGTAGAGCATGAAGGGCCCCCCGGTCTCGAGCTGGGCGACGAGGACGCTGTTCCAGAGG 244864 |||||||||||||| || |||||||| |||||| | || | | || ||| || Sbjct 1881943 TTGTAGAGCATGAATGGGTTTCCGGTCTCAGTCTGGGCCTCAAGAATGGCGTACCACAGC 1882002 Query 244865 TCCCTAGCCTTGACCGTCCTGCGAGCCTTGCCCTCTGCCTCGTAGCGGGTGTACAGGGCC 244924 | | |||||||| ||| ||||| |||| ||| | |||||| |||||| ||| Sbjct 1882003 TTCTGAGCCTTGATGGTCTTGCGACCCTTACCCGCCTTCTCGTACTTTTCGTACAGAGCC 1882062 Query 244925 TCGAACTCGGGGCCCCAGACCTCGTCTAGGCCGGGGCACGACGCCGGGCACATGAGACTC 244984 || ||||| || || ||| | ||||| |||||| |||||||| || || Sbjct 1882063 TCAAACTCCTCTCCGTAGCAGTCGGCGAGGCCAGGGCACTCGTTAGGGCACATCAGTGTC 1882122 Query 244985 CACTCGCCGCCGTCCTTGACCCTCTGCATGAAGAGGTCGGGGATCCAGAGGGCCTGGAAG 245044 || || ||| | | || | || |||||| || ||||||||||| ||||| |||| Sbjct 1882123 CAGTCACCGTTCTTTTCAACGCGCTTCATGAAAAGATCGGGGATCCAAAGGGCAAGGAAA 1882182 Query 245045 AGGTCCCTGGTCCTCTGCTCGTCCGAGCCAGTGTTCTTCCTCAGCTCCAAAAAGTCAAAG 245104 ||||| | || | ||| ||| || |||||| | || || | || || ||| Sbjct 1882183 AGGTCACGGGCACGAACCTCCTCCTTACCGTGGTTCTTACGGAGATCAAGGAATTCGAAG 1882242 Query 245105 ACGTCGACGTGCCAGGGCTCCATGTAGACAGCGAGGGCGCCGGGCCGCTTGTTGCCTCCC 245164 || ||| |||||| ||||| | ||||| || | || ||||| ||||||||||| ||| Sbjct 1882243 ACATCGGAGTGCCAAGGCTCGAGGTAGATGGCAAAAGCACCGGGTCGCTTGTTGCCACCC 1882302 Query 245165 TGG--TCCACCATCCTCTCGAGC----GCGTTGAAGATGCGCAGGGTAGGCACTATGCCG 245218 ||| | | ||||| |||||| | || || |||| || | ||| Sbjct 1882303 TGGNNNNNNNNNNCATACCGAGCAGTGTTGTTGAACACACGAAGCATAGGAACAACACCG 1882362 Query 245219 TTAGAGTGGCCGTTGGTGCCCTTGATGTAGGCGCCCTTGCCCCTG--AGGTTGCTGATGG 245276 || || |||||||| || |||||| | ||| | | | | | | ||| || Sbjct 1882363 TTCGATGTACCGTTGGTACCGGCGATGTATGAGCCAGTAGCACGGATACGGTGCACAT-- 1882420 Query 245277 ACATGCCTAGTCCGCCGGCGTGCTTGGAGATGAGGGCGCAGCTCTTGATGGTGTCTGCTA 245336 || || | || || || ||||||||| | ||| ||| |||||| || || | Sbjct 1882421 TCAGACCAATACCACCAGCCATCTTGGAGATCATGGCACAGGTCTTGAGAGTATCGTAGA 1882480 Query 245337 TGCCCTCCATGCTGTCCGACTTCATGTTGAGCAGAAAGCAGGAGGACAGCTGGGGCTTGG 245396 | ||||| || ||||| |||||| | | || ||||| || |||| ||||||| | Sbjct 1882481 TTCCCTCAATACTGTCATCCTTCATATCAACCAAGAAGCAAGATGACAATTGGGGCTGAG 1882540 Query 245397 GGCTGCACGAGTTGAACAGAGTGGGG 245422 || ||| | |||||| || |||||| Sbjct 1882541 GGGTGCCGGCGTTGAAGAGCGTGGGG 1882566 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 944330795381120