Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Fusarium_20udum_20[genbank_20GCA_5F002194535.1_202017-06-15] 712 sequences; 56,380,608 total letters Query= NC_011183.1 Length=154641 Score E Sequences producing significant alignments: (Bits) Value seq223 156 4e-33 >seq223 Length=6419709 Score = 156 bits (172), Expect = 4e-33 Identities = 592/926 (64%), Gaps = 12/926 (1%) Strand=Plus/Minus Query 93718 TACGATTACTTTGCCTTCAAAACTCTGGAGAAGTCGTACCTCCTCAAGATGGATGGCAGG 93777 ||| | ||||||| |||||| ||| ||||| || |||||||||||||| || || | | Sbjct 1882745 TACCAATACTTTGGCTTCAAGACTTTGGAGCGATCATACCTCCTCAAGATTGACGGTAAG 1882686 Query 93778 GTTTCCGAGCGACCGCACCAGCTGCTGATGCGCGTCGCCATCGGGATTCACGGCCACGAC 93837 || |||||| || || || || | ||||| || | | || || || | || Sbjct 1882685 ATTGTCGAGCGCCCTCAGCACATGATCATGCGTGTGTCTGTTGGTATCTGGGGTGATGAT 1882626 Query 93838 ATGCCGAATGTTTTGCGGGCTTTCAGAGACATGCGGGACAAGAGGTATAC-CATGGCCAC 93896 || | || ||| | | | || ||| |||| | || |||| | | Sbjct 1882625 ATCGAGCGAGTCTTGGAGACATACAATCTGATGTCCAGCAAGTTCTTCACGCATG-CTTC 1882567 Query 93897 CCCGACCCTGTTCAACGCGGGGACCCCGGTGCCACAGATGTCTTCGTGTTTCCTGATGAC 93956 ||| || || |||||||| || ||||| ||| || |||| || || ||| || | Sbjct 1882566 CCCCACGCTCTTCAACGCCGGCACCCCTCAGCCCCAATTGTCATCTTGCTTCTTGGTTGA 1882507 Query 93957 GAACAAGGCCGACTCCATCTCCGGAATTTTCGACAGCCTCAAGGACTGTGCGACCATCTC 94016 | |||| ||| || ||||| | ||| | |||||| |||||| | ||||| Sbjct 1882506 TATGAAGGATGACAGTATTGAGGGAATCTACGATACTCTCAAGACCTGTGCCATGATCTC 1882447 Query 94017 AAAATACGCGGGGGGAATCGGGATCAGTGTCCACGACGTA--CGTGCCAGGGGTTCCTAC 94074 || || || || || || | | ||| ||| |||| ||||| | || || ||| Sbjct 1882446 CAAGATGGCTGGTGGTATTGGTCTGAATGTGCAC--CGTATCCGTGCTACTGGCTCATAC 1882389 Query 94075 ATCCGCGGTACCAATGGCACCTCCAACGGCCTCGTCCCTATGCTCCGGGTCTTCAACAAC 94134 ||| ||||||||| || || || ||||| | || |||||||| || || ||||||||| Sbjct 1882388 ATCGCCGGTACCAACGGTACATCGAACGGTGTTGTTCCTATGCTTCGTGTGTTCAACAAC 1882329 Query 94135 GCGGCGCGCTACGTGGA------CCAGGGTGGTGGGAGGAGGAAGGGTTCTTTCGCGGTC 94188 | || || || | ||||||||| | | | ||| |||| || || Sbjct 1882328 ACTGCTCGGTATGNNNNNNNNNNCCAGGGTGGCAACAAGCGACCCGGTGCTTTTGCCATC 1882269 Query 94189 TATCTCGAGCCCTGGCACGCGGACGTGCAGGCTTTCATCGACCTGCGAAAGAACCACGGC 94248 || |||||||| |||||| | || || | ||| | || || || ||||||||||| Sbjct 1882268 TACCTCGAGCCTTGGCACTCCGATGTCTTCGAATTCCTTGATCTCCGTAAGAACCACGGT 1882209 Query 94249 AACGATCTGGAGAGGGCCAGAGACCTCTTCTACGCTCTCTGGGTGCCAGACCTTTTTATG 94308 || || || | ||| | ||||| ||| || || ||| | || || ||||| ||| Sbjct 1882208 AAGGAGGAGGTTCGTGCCCGTGACCTTTTCCTTGCCCTTTGGATCCCCGATCTTTTCATG 1882149 Query 94309 AAACGCGTCGAGAAAAACTCCGCCTGGAGTCTTTTTTGTCCCAATGAATGTCCCGGACTG 94368 || ||||| || || ||| | ||||| || | || || || || || || || || Sbjct 1882148 AAGCGCGTTGAAAAGAACGGTGACTGGACACTGATGTGCCCTAACGAGTGCCCTGGCCTC 1882089 Query 94369 TCCGACGTTTGTGGATCGCGTTTTGAAGACTTGTATGCTCGTTACGAATCGCAGGGCAAG 94428 ||||| | ||| | ||||| | |||| | ||||| | ||| ||| Sbjct 1882088 GCCGACTGCTACGGAGAGGAGTTTGAGGCTCTGTACGAAAAGTACGAGAAGGCGGGTAAG 1882029 Query 94429 GCCAGGAAGGTTATGGATGCTAGGAAGCTGTGGGATCAGATCGTGGACGTACAGGTGGAG 94488 | | ||| || | ||| |||||||||| | || | || | ||| ||| Sbjct 1882028 GGTCGCAAGACCATCAAGGCTCAGAAGCTGTGGTACGCCATTCTTGAGGCCCAGACTGAG 1881969 Query 94489 ACGGGTACGCCCTACATCTTGTTCAAGGACTCTGTCAACGCCAAGTCCAACCAGCAGCAC 94548 || || | || | ||| | | |||||| | |||| |||| |||||| || || Sbjct 1881968 ACCGGAAACCCATTCATGCTCTACAAGGATGCCTGCAACCGCAAGAGCAACCAAAAGAAC 1881909 Query 94549 CTCGGGGTGATCAAGAGCTCGAATCTGTGCACCGAGATTGTCGAGTATACTTCTCCGGAC 94608 ||||| ||| ||||| || || ||||| || ||| ||||||| | | || ||| Sbjct 1881908 CTCGGTACCATCCGAAGCTCCAACCTTTGCACTGAAATTATCGAGTACTGTGCCCCTGAC 1881849 Query 94609 GAGATTGCTGTGTGTAACCTGGGCTC 94634 ||| | ||||| || ||||| | ||| Sbjct 1881848 GAGGTCGCTGTCTGCAACCTCGCCTC 1881823 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 494718796963520